ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107385.1| Zea mays PCO102436 mRNA sequence 168 1e-38
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
3dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
4dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
5dbj|AK120801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
6dbj|AK100995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
7ref|NM_190041.1| Oryza sativa (japonica cultivar-group), predic... 153 6e-34
8gb|BC058386.1| Mus musculus neuralized-like homolog (Drosophila)... 46 0.10
9gb|AC132288.5| Mus musculus BAC clone RP24-315D13 from chromosom... 46 0.10
10ref|XM_894271.2| PREDICTED: Mus musculus similar to Histone H1.5... 46 0.10
11gb|BC099702.1| Mus musculus neuralized-like homolog (Drosophila)... 46 0.10
12gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 m... 46 0.10
13dbj|AK046382.1| Mus musculus adult male corpora quadrigemina cDN... 46 0.10
14ref|NM_021360.3| Mus musculus neuralized-like homolog (Drosophil... 46 0.10
15emb|Z99109.2|BSUB0006 Bacillus subtilis complete genome (section... 44 0.40
16emb|Y09476.1|BSY09476 Bacillus subtilis 54kb genomic DNA fragment 44 0.40
17gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 44 0.40
18gb|AC171909.2| Capitella capitata clone JGIBGZA-9H1, complete se... 44 0.40
19emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4... 44 0.40
20emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chro... 44 0.40
21ref|NM_193619.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
22emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.6
23gb|AC027281.10| Homo sapiens chromosome 16 clone RP11-424M24, co... 42 1.6
24dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
25gb|AC007208.13| Drosophila melanogaster clone BACR05D08, complet... 40 6.2
26ref|XM_473888.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
27ref|NM_193827.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
28gb|AY526362.1| Arachis hypogaea clone PM606 microsatellite sequence 40 6.2
29emb|Z99283.1|CEY70C5C Caenorhabditis elegans YAC Y70C5C, complet... 40 6.2
30gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence 40 6.2
31ref|XM_776602.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.2
32gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, com... 40 6.2
33emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.2
34emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 6.2
35emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 6.2
36emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 40 6.2
37emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
38dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
39emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on ch... 40 6.2
40gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, co... 40 6.2
41gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.2
42gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 1... 40 6.2
43dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44gb|AC108059.6| Homo sapiens BAC clone RP11-398G9 from 2, complet... 40 6.2
45dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.2
46dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, ... 40 6.2
47dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
48dbj|AK100805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
49emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 6.2
50gb|AC134787.6| Mus musculus chromosome 1, clone RP24-477E13, com... 40 6.2
51gb|AE003670.5| Drosophila melanogaster chromosome 2L, section 79... 40 6.2
52emb|AJ271919.1|MMU271919 Mus musculus partial neurl gene, exon 1... 40 6.2
53gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.2
54gb|AC134542.3| Mus musculus BAC clone RP24-441E15 from 6, comple... 40 6.2
55gb|AC138397.4| Mus musculus BAC clone RP23-65O11 from 8, complet... 40 6.2
56gb|AC133202.3| Mus musculus BAC clone RP23-83P19 from 8, complet... 40 6.2
57emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11... 40 6.2
58gb|AC136316.13| Mus musculus chromosome 1, clone RP24-331K22, co... 40 6.2
59emb|AL671888.8| Mouse DNA sequence from clone RP23-247O14 on chr... 40 6.2 
>gb|AY107385.1| Zea mays PCO102436 mRNA sequence
          Length = 429

 Score =  168 bits (85), Expect = 1e-38
 Identities = 186/218 (85%), Gaps = 5/218 (2%)
 Strand = Plus / Plus

                                                                       
Query: 176 ctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtacccacc 235
           |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    |
Sbjct: 189 ctagaaatcgaagccgccgccgtcgtcgaacccggcgtcgtagccggcgtcgtac---gc 245

                                                                       
Query: 236 ggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagccc 295
            | |||||| ||||||||||||||||| ||||| || ||||  |||||||||||||||||
Sbjct: 246 cgacgagtccgagatcatgtcgccgatcaggaggcccccgacggcgcctccgagcagccc 305

                                                                       
Query: 296 cgcgccgaggcccatccccatgccgctcttcttcggc--ggcttcacggcctgctgctgg 353
            || ||||| |||||||| | |  | ||||||||  |   || |||||||||||||||||
Sbjct: 306 ggccccgagccccatcccgaagttgttcttcttcttctgcgcctcacggcctgctgctgg 365

                                                 
Query: 354 tacccgtacccggccggctgctgcggcgggtacccgta 391
           |||||||||||||| | |||| |||||||||| |||||
Sbjct: 366 tacccgtacccggcggcctgcggcggcgggtagccgta 403
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 4e-35
 Identities = 225/272 (82%), Gaps = 15/272 (5%)
 Strand = Plus / Plus

                                                                            
Query: 174      atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233
                ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | 
Sbjct: 40965945 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 40966004

                                                                            
Query: 234      ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293
                   | || |||||||||   ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 40966005 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 40966061

                                                                            
Query: 294      cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353
                || || ||||| |||||||| | |  | ||||||||| ||||||||||||||||||||||
Sbjct: 40966062 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 40966121

                                                                            
Query: 354      ta---cccgtacccggccggctgctgcggcgggtacccgta---gccgccgtaccctcct 407
                ||    |||||||| ||      |||||||||||| |||||   ||||||||| ||  ||
Sbjct: 40966122 tagccgccgtacccagc------ctgcggcgggtagccgtagccgccgccgtagccggct 40966175

                                                
Query: 408      tgcggcggcgggggcgggtagccgtacccggc 439
                |||||||||||||| ||||||||||| |||||
Sbjct: 40966176 tgcggcggcgggggtgggtagccgtagccggc 40966207



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 408      tgcggcggcgggggcgggtag 428
                |||||||||||||||||||||
Sbjct: 22176182 tgcggcggcgggggcgggtag 22176202



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 196      cgtcgtcgaacccggcgtcgtagccggc 223
                |||||| |||||||||||||||| ||||
Sbjct: 15143407 cgtcgttgaacccggcgtcgtaggcggc 15143380
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>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0492G09
          Length = 142239

 Score =  157 bits (79), Expect = 4e-35
 Identities = 225/272 (82%), Gaps = 15/272 (5%)
 Strand = Plus / Plus

                                                                        
Query: 174  atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233
            ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | 
Sbjct: 2875 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 2934

                                                                        
Query: 234  ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293
               | || |||||||||   ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 2935 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 2991

                                                                        
Query: 294  cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353
            || || ||||| |||||||| | |  | ||||||||| ||||||||||||||||||||||
Sbjct: 2992 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 3051

                                                                        
Query: 354  ta---cccgtacccggccggctgctgcggcgggtacccgta---gccgccgtaccctcct 407
            ||    |||||||| ||      |||||||||||| |||||   ||||||||| ||  ||
Sbjct: 3052 tagccgccgtacccagc------ctgcggcgggtagccgtagccgccgccgtagccggct 3105

                                            
Query: 408  tgcggcggcgggggcgggtagccgtacccggc 439
            |||||||||||||| ||||||||||| |||||
Sbjct: 3106 tgcggcggcgggggtgggtagccgtagccggc 3137
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>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423A12
          Length = 178649

 Score =  157 bits (79), Expect = 4e-35
 Identities = 225/272 (82%), Gaps = 15/272 (5%)
 Strand = Plus / Plus

                                                                         
Query: 174   atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233
             ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | 
Sbjct: 94370 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 94429

                                                                         
Query: 234   ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293
                | || |||||||||   ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 94430 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 94486

                                                                         
Query: 294   cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353
             || || ||||| |||||||| | |  | ||||||||| ||||||||||||||||||||||
Sbjct: 94487 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 94546

                                                                         
Query: 354   ta---cccgtacccggccggctgctgcggcgggtacccgta---gccgccgtaccctcct 407
             ||    |||||||| ||      |||||||||||| |||||   ||||||||| ||  ||
Sbjct: 94547 tagccgccgtacccagc------ctgcggcgggtagccgtagccgccgccgtagccggct 94600

                                             
Query: 408   tgcggcggcgggggcgggtagccgtacccggc 439
             |||||||||||||| ||||||||||| |||||
Sbjct: 94601 tgcggcggcgggggtgggtagccgtagccggc 94632
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>dbj|AK120801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M12, full
            insert sequence
          Length = 1353

 Score =  157 bits (79), Expect = 4e-35
 Identities = 225/272 (82%), Gaps = 15/272 (5%)
 Strand = Plus / Minus

                                                                        
Query: 174  atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233
            ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | 
Sbjct: 1191 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 1132

                                                                        
Query: 234  ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293
               | || |||||||||   ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1131 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 1075

                                                                        
Query: 294  cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353
            || || ||||| |||||||| | |  | ||||||||| ||||||||||||||||||||||
Sbjct: 1074 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 1015

                                                                        
Query: 354  ta---cccgtacccggccggctgctgcggcgggtacccgta---gccgccgtaccctcct 407
            ||    |||||||| ||      |||||||||||| |||||   ||||||||| ||  ||
Sbjct: 1014 tagccgccgtacccagc------ctgcggcgggtagccgtagccgccgccgtagccggct 961

                                            
Query: 408  tgcggcggcgggggcgggtagccgtacccggc 439
            |||||||||||||| ||||||||||| |||||
Sbjct: 960  tgcggcggcgggggtgggtagccgtagccggc 929
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>dbj|AK100995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146J24, full
            insert sequence
          Length = 1371

 Score =  157 bits (79), Expect = 4e-35
 Identities = 225/272 (82%), Gaps = 15/272 (5%)
 Strand = Plus / Minus

                                                                        
Query: 174  atctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtaccca 233
            ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||| | 
Sbjct: 1195 atctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc 1136

                                                                        
Query: 234  ccggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagc 293
               | || |||||||||   ||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 1135 ---gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagc 1079

                                                                        
Query: 294  cccgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctgg 353
            || || ||||| |||||||| | |  | ||||||||| ||||||||||||||||||||||
Sbjct: 1078 ccggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctgg 1019

                                                                        
Query: 354  ta---cccgtacccggccggctgctgcggcgggtacccgta---gccgccgtaccctcct 407
            ||    |||||||| ||      |||||||||||| |||||   ||||||||| ||  ||
Sbjct: 1018 tagccgccgtacccagc------ctgcggcgggtagccgtagccgccgccgtagccggct 965

                                            
Query: 408  tgcggcggcgggggcgggtagccgtacccggc 439
            |||||||||||||| ||||||||||| |||||
Sbjct: 964  tgcggcggcgggggtgggtagccgtagccggc 933
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>ref|NM_190041.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score =  153 bits (77), Expect = 6e-34
 Identities = 223/270 (82%), Gaps = 15/270 (5%)
 Strand = Plus / Minus

                                                                        
Query: 176  ctagaaatcgaagccgcctccgtcgtcgaacccggcgtcgtagccggcatcgtacccacc 235
            ||||||||||||||| || |||||||||||||| |||||||||||||| || ||| |   
Sbjct: 1077 ctagaaatcgaagccaccgccgtcgtcgaaccctgcgtcgtagccggcgtcatacgcc-- 1020

                                                                        
Query: 236  ggccgagtcggagatcatgtcgccgatgaggagcccgccgagcgcgcctccgagcagccc 295
             | || |||||||||   ||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 1019 -gacgcgtcggagatggcgtctccgatgaggaggccgccgagcgcgccgccgagcagccc 961

                                                                        
Query: 296  cgcgccgaggcccatccccatgccgctcttcttcggcggcttcacggcctgctgctggta 355
             || ||||| |||||||| | |  | ||||||||| ||||||||||||||||||||||||
Sbjct: 960  ggctccgagtcccatcccgaagttgttcttcttcgccggcttcacggcctgctgctggta 901

                                                                        
Query: 356  ---cccgtacccggccggctgctgcggcgggtacccgta---gccgccgtaccctccttg 409
                |||||||| ||      |||||||||||| |||||   ||||||||| ||  ||||
Sbjct: 900  gccgccgtacccagc------ctgcggcgggtagccgtagccgccgccgtagccggcttg 847

                                          
Query: 410  cggcggcgggggcgggtagccgtacccggc 439
            |||||||||||| ||||||||||| |||||
Sbjct: 846  cggcggcgggggtgggtagccgtagccggc 817
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>gb|BC058386.1| Mus musculus neuralized-like homolog (Drosophila), mRNA (cDNA clone
           MGC:66919 IMAGE:6831952), complete cds
          Length = 3995

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304
           ||||||||||| || |||||||||||||| |||||||||
Sbjct: 56  gagcccgccga-cgagcctccgagcagccgcgcgccgag 93
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>gb|AC132288.5| Mus musculus BAC clone RP24-315D13 from chromosome 19, complete sequence
          Length = 177655

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                     
Query: 266    gagcccgccgagcgcgcctccgagcagccccgcgccgag 304
              ||||||||||| || |||||||||||||| |||||||||
Sbjct: 131216 gagcccgccga-cgagcctccgagcagccgcgcgccgag 131179
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>ref|XM_894271.2| PREDICTED: Mus musculus similar to Histone H1.5 (H1 VAR.5) (H1b)
           (LOC629389), mRNA
          Length = 975

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                  
Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304
           ||||||||||| || |||||||||||||| |||||||||
Sbjct: 182 gagcccgccga-cgagcctccgagcagccgcgcgccgag 145
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>gb|BC099702.1| Mus musculus neuralized-like homolog (Drosophila), mRNA (cDNA clone
           MGC:106438 IMAGE:6825751), complete cds
          Length = 4217

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304
           ||||||||||| || |||||||||||||| |||||||||
Sbjct: 231 gagcccgccga-cgagcctccgagcagccgcgcgccgag 268
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>gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 map 18, complete sequence
          Length = 186929

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                     
Query: 266    gagcccgccgagcgcgcctccgagcagccccgcgccgag 304
              ||||||||||| || |||||||||||||| |||||||||
Sbjct: 106978 gagcccgccga-cgagcctccgagcagccgcgcgccgag 106941
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>dbj|AK046382.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230378F24
           product:neuralized homolog (Drosophila), full insert
           sequence
          Length = 4034

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304
           ||||||||||| || |||||||||||||| |||||||||
Sbjct: 30  gagcccgccga-cgagcctccgagcagccgcgcgccgag 67
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>ref|NM_021360.3| Mus musculus neuralized-like homolog (Drosophila) (Neurl), mRNA
          Length = 4217

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 266 gagcccgccgagcgcgcctccgagcagccccgcgccgag 304
           ||||||||||| || |||||||||||||| |||||||||
Sbjct: 231 gagcccgccga-cgagcctccgagcagccgcgcgccgag 268
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>emb|Z99109.2|BSUB0006 Bacillus subtilis complete genome (section 6 of 21): from 1011039 to
              1209781
          Length = 198743

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 331    gcggcttcacggcctgctgctg 352
              ||||||||||||||||||||||
Sbjct: 137208 gcggcttcacggcctgctgctg 137229
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>emb|Y09476.1|BSY09476 Bacillus subtilis 54kb genomic DNA fragment
          Length = 53533

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 331  gcggcttcacggcctgctgctg 352
            ||||||||||||||||||||||
Sbjct: 6139 gcggcttcacggcctgctgctg 6160
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>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence
          Length = 128810

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 82     gaaaaatctcaagacaaaataa 103
              ||||||||||||||||||||||
Sbjct: 118779 gaaaaatctcaagacaaaataa 118758
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>gb|AC171909.2| Capitella capitata clone JGIBGZA-9H1, complete sequence
          Length = 33412

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 94    gacaaaataactgaagaaatat 115
             ||||||||||||||||||||||
Sbjct: 22738 gacaaaataactgaagaaatat 22717
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>emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE
          Length = 136545

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 82    gaaaaatctcaagacaaaataa 103
             ||||||||||||||||||||||
Sbjct: 53591 gaaaaatctcaagacaaaataa 53570
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>emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chromosome 9, complete
              sequence
          Length = 258170

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 329    cggcggcttcacggcctgctgc 350
              ||||||||||||||||||||||
Sbjct: 198283 cggcggcttcacggcctgctgc 198262
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>ref|NM_193619.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3615

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 408 tgcggcggcgggggcgggtag 428
           |||||||||||||||||||||
Sbjct: 167 tgcggcggcgggggcgggtag 147
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>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24
          Length = 295650

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   accggccgagtcggagatcat 253
             |||||||||||||||||||||
Sbjct: 91442 accggccgagtcggagatcat 91462
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>gb|AC027281.10| Homo sapiens chromosome 16 clone RP11-424M24, complete sequence
          Length = 221210

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    acaaaataactgaagaaatat 115
             |||||||||||||||||||||
Sbjct: 52203 acaaaataactgaagaaatat 52183
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>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1112D09
          Length = 125920

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 408   tgcggcggcgggggcgggtag 428
             |||||||||||||||||||||
Sbjct: 71668 tgcggcggcgggggcgggtag 71688
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>gb|AC007208.13| Drosophila melanogaster clone BACR05D08, complete sequence
          Length = 172190

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    cagaaaaatctcaagacaaaataa 103
             |||||||||||||||| |||||||
Sbjct: 78290 cagaaaaatctcaagagaaaataa 78313
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>ref|XM_473888.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3330

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 380 cgggtacccgtagccgccgt 399
           ||||||||||||||||||||
Sbjct: 60  cgggtacccgtagccgccgt 41
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>ref|NM_193827.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223
           |||||| |||||||||||||||| ||||
Sbjct: 880 cgtcgttgaacccggcgtcgtaggcggc 853
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>gb|AY526362.1| Arachis hypogaea clone PM606 microsatellite sequence
          Length = 500

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 ccctccttgcggcggcgggggcgg 424
           |||||||||||||||||| |||||
Sbjct: 203 ccctccttgcggcggcggcggcgg 226
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>emb|Z99283.1|CEY70C5C Caenorhabditis elegans YAC Y70C5C, complete sequence
          Length = 20639

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aaaataactgaagaaatatc 116
             ||||||||||||||||||||
Sbjct: 18155 aaaataactgaagaaatatc 18136
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>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence
          Length = 120464

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   agccgtacccggccggctgc 446
             ||||||||||||||||||||
Sbjct: 66369 agccgtacccggccggctgc 66388
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>ref|XM_776602.1| PREDICTED: Strongylocentrotus purpuratus similar to ankyrin 3,
           epithelial isoform a (LOC576280), mRNA
          Length = 5670

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 324 ttcttcggcggcttcacggcctgctgct 351
           ||||||||||||||| ||||| ||||||
Sbjct: 89  ttcttcggcggcttctcggccggctgct 62
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>gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, complete sequence
          Length = 220133

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    tgagcagaaaaatctcaaga 95
             ||||||||||||||||||||
Sbjct: 95369 tgagcagaaaaatctcaaga 95388
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 285   ccgagcagccccgcgccgaggccc 308
             |||||||| |||||||||||||||
Sbjct: 70697 ccgagcaggcccgcgccgaggccc 70674
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 285    ccgagcagccccgcgccgaggccc 308
              |||||||| |||||||||||||||
Sbjct: 143717 ccgagcaggcccgcgccgaggccc 143694
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 285    ccgagcagccccgcgccgaggccc 308
              |||||||| |||||||||||||||
Sbjct: 227260 ccgagcaggcccgcgccgaggccc 227283
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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    cagccccgcgccgaggccca 309
              ||||||||||||||||||||
Sbjct: 168104 cagccccgcgccgaggccca 168085
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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
              complete sequence
          Length = 133279

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    cgggtacccgtagccgccgt 399
              ||||||||||||||||||||
Sbjct: 100028 cgggtacccgtagccgccgt 100009
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>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0560B06
          Length = 161720

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 196    cgtcgtcgaacccggcgtcgtagccggc 223
              |||||| |||||||||||||||| ||||
Sbjct: 159459 cgtcgttgaacccggcgtcgtaggcggc 159432
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>emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on chromosome X, complete
              sequence
          Length = 162215

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     atgttaaaaccttctattta 31
              ||||||||||||||||||||
Sbjct: 133684 atgttaaaaccttctattta 133703



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     atgttaaaaccttctattta 31
              ||||||||||||||||||||
Sbjct: 127122 atgttaaaaccttctattta 127141
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>gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, complete sequence
          Length = 129564

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    ttaaaaccttctatttacattacc 38
             |||||||||| |||||||||||||
Sbjct: 31855 ttaaaaccttatatttacattacc 31832
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 197     gtcgtcgaacccggcgtcgt 216
               ||||||||||||||||||||
Sbjct: 2030543 gtcgtcgaacccggcgtcgt 2030524
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>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete
             Sequence, complete sequence
          Length = 105198

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 196   cgtcgtcgaacccggcgtcgtagccggc 223
             |||||| |||||||||||||||| ||||
Sbjct: 97072 cgtcgttgaacccggcgtcgtaggcggc 97045
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 380      cgggtacccgtagccgccgt 399
                ||||||||||||||||||||
Sbjct: 31278426 cgggtacccgtagccgccgt 31278407
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>gb|AC108059.6| Homo sapiens BAC clone RP11-398G9 from 2, complete sequence
          Length = 124950

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   gcggcggcgggggcgggtag 428
             ||||||||||||||||||||
Sbjct: 23001 gcggcggcgggggcgggtag 22982
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     cgagcagccccgcgccgagg 305
               ||||||||||||||||||||
Sbjct: 8253593 cgagcagccccgcgccgagg 8253612



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 271     cgccgagcgcgcctccgagc 290
               ||||||||||||||||||||
Sbjct: 7847114 cgccgagcgcgcctccgagc 7847133
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>dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, complete genome
          Length = 208315

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ccgcccacagatgcgccggc 70
             ||||||||||||||||||||
Sbjct: 14854 ccgcccacagatgcgccggc 14873
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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0043B10
          Length = 167399

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 196    cgtcgtcgaacccggcgtcgtagccggc 223
              |||||| |||||||||||||||| ||||
Sbjct: 115373 cgtcgttgaacccggcgtcgtaggcggc 115346
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>dbj|AK100805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121K24, full
           insert sequence
          Length = 1165

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 196 cgtcgtcgaacccggcgtcgtagccggc 223
           |||||| |||||||||||||||| ||||
Sbjct: 988 cgtcgttgaacccggcgtcgtaggcggc 961
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    acccggccggctgctgcggc 380
              ||||||||||||||||||||
Sbjct: 515111 acccggccggctgctgcggc 515092
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>gb|AC134787.6| Mus musculus chromosome 1, clone RP24-477E13, complete sequence
          Length = 150960

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aaaaatctcaagacaaaata 102
              ||||||||||||||||||||
Sbjct: 141498 aaaaatctcaagacaaaata 141517
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>gb|AE003670.5| Drosophila melanogaster chromosome 2L, section 79 of 83 of the complete
              sequence
          Length = 258711

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     cagaaaaatctcaagacaaaataa 103
              |||||||||||||||| |||||||
Sbjct: 107365 cagaaaaatctcaagagaaaataa 107388
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>emb|AJ271919.1|MMU271919 Mus musculus partial neurl gene, exon 1 and joined CDS
          Length = 929

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 281 gcctccgagcagccccgcgccgag 304
           |||||||||||||| |||||||||
Sbjct: 388 gcctccgagcagccgcgcgccgag 411
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 286     cgagcagccccgcgccgagg 305
               ||||||||||||||||||||
Sbjct: 1643395 cgagcagccccgcgccgagg 1643376
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>gb|AC134542.3| Mus musculus BAC clone RP24-441E15 from 6, complete sequence
          Length = 175750

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    agaaaaatctcaagacaaaa 100
             ||||||||||||||||||||
Sbjct: 40707 agaaaaatctcaagacaaaa 40726
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>gb|AC138397.4| Mus musculus BAC clone RP23-65O11 from 8, complete sequence
          Length = 246976

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    agacaaaataactgaagaaa 112
             ||||||||||||||||||||
Sbjct: 14971 agacaaaataactgaagaaa 14990
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>gb|AC133202.3| Mus musculus BAC clone RP23-83P19 from 8, complete sequence
          Length = 150932

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    agacaaaataactgaagaaa 112
             ||||||||||||||||||||
Sbjct: 44771 agacaaaataactgaagaaa 44752
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>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
          Length = 136557

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    gaaaaatctcaagacaaaat 101
             ||||||||||||||||||||
Sbjct: 69864 gaaaaatctcaagacaaaat 69883
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>gb|AC136316.13| Mus musculus chromosome 1, clone RP24-331K22, complete sequence
          Length = 197109

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     aaaaatctcaagacaaaata 102
              ||||||||||||||||||||
Sbjct: 143305 aaaaatctcaagacaaaata 143286
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>emb|AL671888.8| Mouse DNA sequence from clone RP23-247O14 on chromosome X, complete
             sequence
          Length = 52491

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    gagcagaaaaatctcaagacaaaa 100
             ||||||||||||||||||| ||||
Sbjct: 15145 gagcagaaaaatctcaagaaaaaa 15122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,760,615
Number of Sequences: 3902068
Number of extensions: 3760615
Number of successful extensions: 89263
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88298
Number of HSP's gapped (non-prelim): 947
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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