ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transfe... 406 e-110
2dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase,... 86 5e-14
3gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, com... 42 0.70
4gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, comp... 42 0.70
5gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosom... 40 2.8
6dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 2.8
7gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold 40 2.8
8gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome... 40 2.8

>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
          Length = 1175

 Score =  406 bits (205), Expect = e-110
 Identities = 214/217 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    gagcgaatatgattattattatgggatacttagttggatcatgcgtgagcaatcagaaga 60
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1175 gagcgaatatgattattattatagcatacttagttggatcatgcgtgagcaatcagaaga 1116

                                                                        
Query: 61   ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactagtaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactagtaca 1056

                                                                        
Query: 121  tctcatcgaccgcaccgcgaccggtggtacaacaacaactactggagtagcggtccttta 180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1055 tctcatcgaccgcaccgcgaccggtggtacaacaacaactactgtagtagcggtccttta 996

                                                 
Query: 181  catcagtagtagtaagtaaagtatatcacgctcagac 217
            |||||||||||||||||||||||||||||||||||||
Sbjct: 995  catcagtagtagtaagtaaagtatatcacgctcagac 959



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>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds
          Length = 1088

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 91   gtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcgaccggtggtac 150
            ||||||||||||||||||||||||| ||  ||||| |||||||||||||||| | || ||
Sbjct: 1039 gtagggatacaaattcctcgtactactaggtctcagcgaccgcaccgcgaccagcggcac 980

                       
Query: 151  aacaacaacta 161
            |||||||||||
Sbjct: 979  aacaacaacta 969



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>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence
          Length = 158535

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    gagcaatcagaagaataataa 67
             |||||||||||||||||||||
Sbjct: 24758 gagcaatcagaagaataataa 24738



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>gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, complete sequence
          Length = 174399

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    gagcaatcagaagaataataa 67
             |||||||||||||||||||||
Sbjct: 43813 gagcaatcagaagaataataa 43833



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>gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosome 5, complete
            sequence
          Length = 194560

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   cacgcatgagcatacagaca 89
            ||||||||||||||||||||
Sbjct: 9765 cacgcatgagcatacagaca 9784



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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 38      atcatgcgtgagcaatcaga 57
               ||||||||||||||||||||
Sbjct: 1688270 atcatgcgtgagcaatcaga 1688251



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>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     tacagacacgtagggataca 101
              ||||||||||||||||||||
Sbjct: 498467 tacagacacgtagggataca 498448



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>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence
          Length = 222180

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    cacgcatgagcatacagaca 89
             ||||||||||||||||||||
Sbjct: 82293 cacgcatgagcatacagaca 82274


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,281,624
Number of Sequences: 3902068
Number of extensions: 3281624
Number of successful extensions: 141101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141061
Number of HSP's gapped (non-prelim): 40
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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