Clone Name | rbart43c06 |
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Clone Library Name | barley_pub |
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase Length = 1175 Score = 406 bits (205), Expect = e-110 Identities = 214/217 (98%) Strand = Plus / Minus Query: 1 gagcgaatatgattattattatgggatacttagttggatcatgcgtgagcaatcagaaga 60 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 1175 gagcgaatatgattattattatagcatacttagttggatcatgcgtgagcaatcagaaga 1116 Query: 61 ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactagtaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactagtaca 1056 Query: 121 tctcatcgaccgcaccgcgaccggtggtacaacaacaactactggagtagcggtccttta 180 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1055 tctcatcgaccgcaccgcgaccggtggtacaacaacaactactgtagtagcggtccttta 996 Query: 181 catcagtagtagtaagtaaagtatatcacgctcagac 217 ||||||||||||||||||||||||||||||||||||| Sbjct: 995 catcagtagtagtaagtaaagtatatcacgctcagac 959
>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds Length = 1088 Score = 85.7 bits (43), Expect = 5e-14 Identities = 64/71 (90%) Strand = Plus / Minus Query: 91 gtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcgaccggtggtac 150 ||||||||||||||||||||||||| || ||||| |||||||||||||||| | || || Sbjct: 1039 gtagggatacaaattcctcgtactactaggtctcagcgaccgcaccgcgaccagcggcac 980 Query: 151 aacaacaacta 161 ||||||||||| Sbjct: 979 aacaacaacta 969
>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence Length = 158535 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 gagcaatcagaagaataataa 67 ||||||||||||||||||||| Sbjct: 24758 gagcaatcagaagaataataa 24738
>gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, complete sequence Length = 174399 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 gagcaatcagaagaataataa 67 ||||||||||||||||||||| Sbjct: 43813 gagcaatcagaagaataataa 43833
>gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosome 5, complete sequence Length = 194560 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cacgcatgagcatacagaca 89 |||||||||||||||||||| Sbjct: 9765 cacgcatgagcatacagaca 9784
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 atcatgcgtgagcaatcaga 57 |||||||||||||||||||| Sbjct: 1688270 atcatgcgtgagcaatcaga 1688251
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 tacagacacgtagggataca 101 |||||||||||||||||||| Sbjct: 498467 tacagacacgtagggataca 498448
>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence Length = 222180 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cacgcatgagcatacagaca 89 |||||||||||||||||||| Sbjct: 82293 cacgcatgagcatacagaca 82274 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,281,624 Number of Sequences: 3902068 Number of extensions: 3281624 Number of successful extensions: 141101 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141061 Number of HSP's gapped (non-prelim): 40 length of query: 217 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 195 effective length of database: 17,147,199,772 effective search space: 3343703955540 effective search space used: 3343703955540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)