ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart43c05 |
|---|---|
| Clone Library Name | barley_pub |
>GPAT6_ARATH (O80437) Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)| (AtGPAT6) Length = 501 Score = 91.7 bits (226), Expect = 6e-19 Identities = 42/60 (70%), Positives = 47/60 (78%) Frame = -2 Query: 418 FLNMLPKELTCGGGKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRVPSKNK 239 FL +P ELTC GGKSPIEVANYIQ+ L LGFECT TRK+KY +LAGTDGRVP K + Sbjct: 440 FLKQIPAELTCKGGKSPIEVANYIQRVLGGTLGFECTNFTRKDKYAMLAGTDGRVPVKKE 499
>GPAT4_ARATH (Q9LMM0) Glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.15)| (AtGPAT4) Length = 503 Score = 80.1 bits (196), Expect = 2e-15 Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 1/63 (1%) Frame = -2 Query: 418 FLNMLPKELTC-GGGKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRVPSKN 242 FL+ LP+E+T GGGK+P EVANY+QK + LGFECT +TRK+KY +L G DG+V S N Sbjct: 438 FLDRLPEEMTVNGGGKTPFEVANYVQKVIGGVLGFECTELTRKDKYLLLGGNDGKVESIN 497 Query: 241 KDK 233 K K Sbjct: 498 KTK 500
>GPAT8_ARATH (Q5XF03) Probable glycerol-3-phosphate acyltransferase 8 (EC| 2.3.1.15) Length = 500 Score = 79.7 bits (195), Expect = 3e-15 Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 1/64 (1%) Frame = -2 Query: 418 FLNMLPKELTC-GGGKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRVPSKN 242 FL+ LP+E+T GGGK+PIEVANY+QK + LGFECT +TRK+KY +L G DG+V S N Sbjct: 437 FLDRLPEEMTVNGGGKTPIEVANYVQKVIGAVLGFECTELTRKDKYLLLGGNDGKVESIN 496 Query: 241 KDKE 230 K+ Sbjct: 497 NTKK 500
>GPAT5_ARATH (Q9CAY3) Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15)| (AtGPAT5) Length = 502 Score = 78.2 bits (191), Expect = 7e-15 Identities = 35/55 (63%), Positives = 41/55 (74%) Frame = -2 Query: 418 FLNMLPKELTCGGGKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRV 254 FLN LP E TC GKSP +VANY+Q+ L+ LGFECT TRK+KY +LAG DG V Sbjct: 427 FLNQLPMEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTV 481
>GPAT7_ARATH (Q9LHS7) Putative glycerol-3-phosphate acyltransferase 7 (EC| 2.3.1.15) (AtGPAT7) Length = 500 Score = 75.5 bits (184), Expect = 5e-14 Identities = 34/55 (61%), Positives = 40/55 (72%) Frame = -2 Query: 418 FLNMLPKELTCGGGKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRV 254 FLN L E TC GKSP +VANY+Q+ L+ LGFECT TRK+KY +LAG DG V Sbjct: 425 FLNQLEVEATCSSGKSPYDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTV 479
>GPAT1_ARATH (Q9SHJ5) Glycerol-3-phosphate acyltransferase 1 (EC 2.3.1.15)| (AtGPAT1) Length = 585 Score = 71.6 bits (174), Expect = 7e-13 Identities = 33/54 (61%), Positives = 41/54 (75%) Frame = -2 Query: 415 LNMLPKELTCGGGKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRV 254 L LPKE+TC GGKS EVAN+IQ L+ LGFECT +TR++KY +LAG +G V Sbjct: 531 LKKLPKEMTCAGGKSSFEVANFIQGELARVLGFECTNLTRRDKYLVLAGNEGIV 584
>GPAT2_ARATH (Q9FZ22) Probable glycerol-3-phosphate acyltransferase 2 (EC| 2.3.1.15) (AtGPAT2) Length = 530 Score = 53.9 bits (128), Expect = 1e-07 Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Frame = -2 Query: 391 TCGG----GKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRVPSK 245 TC G GK EVAN++Q + + LGFECT +TR++KY ILAG +G V K Sbjct: 478 TCRGVPDNGKVNFEVANHVQHEIGNALGFECTNLTRRDKYLILAGNNGVVKKK 530
>GPAT3_ARATH (Q9SYJ2) Probable glycerol-3-phosphate acyltransferase 3 (EC| 2.3.1.15) (AtGPAT3) Length = 520 Score = 48.5 bits (114), Expect = 6e-06 Identities = 23/42 (54%), Positives = 29/42 (69%) Frame = -2 Query: 379 GKSPIEVANYIQKTLSDQLGFECTTITRKEKYGILAGTDGRV 254 GK EVAN +Q + L FECT++TRK+KY ILAG +G V Sbjct: 476 GKLKFEVANNVQSDIGKALDFECTSLTRKDKYLILAGNNGVV 517
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 40.0 bits (92), Expect = 0.002 Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 16/92 (17%) Frame = -1 Query: 419 LPQHAAQGA----HLRRGQVA-HRGRQLHPEDAQRP---ARLRVHHHHPQGEVRHT---- 276 +PQ GA HL R +V HRGR H D + P +RLR H HP+G RH Sbjct: 91 VPQRDQDGAPRRRHLLRRRVGGHRGRNRHAGDRRAPGVDSRLRQQHQHPRG--RHASDRV 148 Query: 275 --GRHRRTRPVQEQGQ--GEELGDRLPRAGHS 192 G H R + ++EQ + G + PR G S Sbjct: 149 QDGAHPRRQRLREQPRHAGRPRRRQPPRRGRS 180
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 32.7 bits (73), Expect = 0.36 Identities = 17/62 (27%), Positives = 27/62 (43%) Frame = -1 Query: 410 HAAQGAHLRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPVQEQGQG 231 H + HL +++ + P+ PA +HHHH +H G+HR+ P G Sbjct: 211 HNHRHQHLGSSELSENQQPGAPDAPTHPAPPGLHHHH-----KHKGQHRQGHPENRDMPG 265 Query: 230 EE 225 E Sbjct: 266 SE 267
>HSP42_YEAST (Q12329) Heat shock protein 42 (42 kDa heat shock protein)| Length = 375 Score = 32.3 bits (72), Expect = 0.47 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -1 Query: 377 QVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPVQEQGQG 231 Q RG+Q +P QRP R H+ G+V G H R P+ + G Sbjct: 20 QTGQRGQQGYPRQPQRPQRYHPHY----GQVHVGGHHPRHHPLYSRYNG 64
>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)| Length = 513 Score = 32.3 bits (72), Expect = 0.47 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Frame = -1 Query: 413 QHAAQGAHLRRGQVAHRGRQLHPEDAQRPA------RLRVHHHHPQGEVRHTGRHRRTRP 252 QHA AH V H Q H + A +PA +L+ H + + R R+ Sbjct: 426 QHAKPAAHTAAKPVQHNAAQQHAKPAAKPAKLTNAQKLQQEHQRQEALAKQQARIRQQNL 485 Query: 251 VQEQGQGEELGDR 213 V++ Q ++ R Sbjct: 486 VKQAAQKKQTSQR 498 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Frame = -1 Query: 413 QHAAQGAHLRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHR----RTRPVQ 246 QHA AH V H +Q H + A A V H+ Q + + RPVQ Sbjct: 361 QHAKPAAHTAAKPVQHNAQQQHAKPAAHTAAKPVQHNAAQQHAKPAAHAKPAVNAARPVQ 420
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 32.0 bits (71), Expect = 0.61 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%) Frame = -1 Query: 413 QHAAQGAHLRRGQVAHRGRQL-HPEDAQRPARLRVHHH---HPQGEVRH-TGRHRRTRP- 252 QH Q H R Q AH +Q+ + Q+P L+ H H G+ H +H++ +P Sbjct: 1876 QHTQQAQHARNAQQAHHTQQVQQAQHVQQPQGLQGQRHGQVHGNGQQLHQQHQHQQQQPQ 1935 Query: 251 ----VQEQGQGEELGDRLPRA 201 Q+Q Q +LP+A Sbjct: 1936 QAQQTQQQRQQVHPAPQLPQA 1956
>LPQT_MYCBO (Q7U0V0) Putative lipoprotein lpqT precursor| Length = 252 Score = 31.6 bits (70), Expect = 0.80 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Frame = -1 Query: 416 PQHAAQGAHLRRGQVAHR-GRQLHPEDAQRPARLRVHHHHPQGE------VRHTGRHRRT 258 P QG++ G+ H R + P A + A HHH G+ RH G HRR Sbjct: 160 PSSMIQGSYDLHGRRLHTWNRIVFPTGAGQAALPGAAHHHESGQRGRQARFRHRGDHRRI 219 Query: 257 R---PVQEQGQGEELGDRLPRAGHSWC 186 R V + G +L ++L R C Sbjct: 220 RRRGKVIVRTVGAQLSEQLTRIEFPQC 246
>YNG5_SCHPO (O13621) Hypothetical protein C691.05c in chromosome II| Length = 668 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 6/42 (14%) Frame = -3 Query: 186 LIMVAIVYSL---LRMINCLLFVRSSL---TVSRKLKVPCRV 79 L+M + +Y L ++NC+L++RSS+ T K VPCRV Sbjct: 506 LVMFSPIYPLAPIFSLVNCVLYIRSSVYRFTKMVKKPVPCRV 547
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = -1 Query: 389 LRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRH 279 L + Q H H Q A + HHHH GEV H Sbjct: 56 LAQKQHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNH 92
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = -1 Query: 389 LRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRH 279 L + Q H H Q A + HHHH GEV H Sbjct: 56 LAQKQHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNH 92
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.8 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = -1 Query: 392 HLRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPV-QEQGQGEELGD 216 HL +++ + P PA +HHHH +H G+HR+ P ++ E+L D Sbjct: 217 HLGSSELSENQQPGAPNAPTHPAPPGLHHHH-----KHKGQHRQGHPENRDMPASEDLQD 271 Query: 215 RLPRAGHSWC*SWLL 171 + C + LL Sbjct: 272 LQKKLCRKRCINQLL 286
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = -1 Query: 368 HRGRQLHPEDAQRPARLRVHHHHPQGEVRH 279 H H A A + HHHH GEV H Sbjct: 67 HHHHHHHQHQAPHQAPHQAHHHHHHGEVNH 96
>DDL_VIBCH (Q9KM17) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 334 Score = 29.6 bits (65), Expect = 3.0 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%) Frame = -2 Query: 394 LTCGGGKSPIEV----ANYIQKTLSDQLGFECTTITRKE-----KYGILAGTDGRVPSKN 242 L CGGG S E+ ANYIQ+ L F + K+ + G L D + N Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 241 KDKEKN*GIDYLAPATVG 188 DK ID++ P G Sbjct: 68 SDKASY-PIDFVVPCIHG 84
>CF2_DROME (P20385) Chorion transcription factor Cf2, isoforms I/II| Length = 510 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = -1 Query: 374 VAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPVQEQGQGE 228 +A R +L PE+ +L+ HHH Q + + ++ + + EQ Q E Sbjct: 213 MAPRDMRLTPEEQHHQQQLQAEHHHQQQHQQQQQQQQQQQELLEQQQRE 261
>CF23_DROME (Q01522) Chorion transcription factor Cf2, isoform III| Length = 514 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = -1 Query: 374 VAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPVQEQGQGE 228 +A R +L PE+ +L+ HHH Q + + ++ + + EQ Q E Sbjct: 213 MAPRDMRLTPEEQHHQQQLQAEHHHQQQHQQQQQQQQQQQELLEQQQRE 261
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -1 Query: 413 QHAAQGAHLRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRH 279 Q AAQ H ++ Q Q H + Q+ +HHHH QG H Sbjct: 1034 QAAAQQQHQQQQQ-----HQQHQQHQQQQLHSPLHHHHHQGHQSH 1073
>RNPA_THEAQ (Q7X5L4) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 162 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -1 Query: 347 PEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPVQEQGQGEELGDRLPRAG 198 PE+A + RL H P+ + R + ++ P+ QG+ LG P+AG Sbjct: 10 PEEAGQDPRLPGPHEDPRRQERAEAQAKKG-PLAPDAQGKRLGQGPPKAG 58
>AMOT_HUMAN (Q4VCS5) Angiomotin| Length = 1084 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Frame = -1 Query: 419 LPQHAAQGAHLRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPVQEQ 240 +P AHL R Q Q H D R ++ + Q + +H H + Q+Q Sbjct: 339 VPNQGDHSAHLPRPQQHFLPNQAHQGDHYRLSQPGLSQQQQQQQQQHHHHHHHQQQQQQQ 398 Query: 239 GQGE--ELGDRLPRA 201 Q + E +PRA Sbjct: 399 PQQQPGEAYSAMPRA 413
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Frame = -1 Query: 386 RRGQVAHRGRQLHPEDAQRPARLRVHHHHPQGEVRHTGRHRRTRPVQEQGQGEELG--DR 213 R G+ HR +PE+++ R + + E+R+ R+ ++ G G Sbjct: 510 REGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSRGRVPE 569 Query: 212 LPRAG 198 LP G Sbjct: 570 LPEKG 574
>KTNA1_MOUSE (Q9WV86) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) (Lipotransin) Length = 491 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -1 Query: 338 AQRPARL-RVHHHHPQGEVRHTGRHRRTRPVQEQGQGEELGDRLPRA 201 + RP+ + R H PQ G+ R+R +EQ +G E ++LP A Sbjct: 127 SNRPSTVVRAHRPSPQNLHNDRGKAVRSREKKEQSKGREEKNKLPAA 173
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -1 Query: 293 GEVR-HTGRHRRTRPVQEQGQGEELGDRLPR 204 G+VR TGR RT P +++ + + L RLPR Sbjct: 185 GQVRGRTGRRTRTLPHEQRKRSQSLDSRLPR 215
>YR27_CAEEL (Q09343) Hypothetical protein W02B3.7| Length = 162 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -2 Query: 373 SPIEVANYIQKTLSDQLGFECTTITRK 293 S V NY T +D L FE TT T+K Sbjct: 94 SRFHVVNYKNSTKTDHLDFEVTTFTKK 120
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 11/54 (20%) Frame = -1 Query: 359 RQLHPEDAQRPARL-----------RVHHHHPQGEVRHTGRHRRTRPVQEQGQG 231 R+ P DA RPAR R H H P RHRR + + QG G Sbjct: 895 RRPRPRDATRPARAADGEGDDGERKRRHRHGPPAHDDRERRHRRRK--ENQGSG 946
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/24 (41%), Positives = 11/24 (45%) Frame = -1 Query: 350 HPEDAQRPARLRVHHHHPQGEVRH 279 HPE+ P HHHHP H Sbjct: 81 HPEEHHEPHHEEHHHHHPHPHHHH 104 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = -1 Query: 350 HPEDAQRPARLRVHHHHPQGEVRHTGRH 267 HPE+ P HHHHP E H H Sbjct: 65 HPEEHHEPHHEEHHHHHP--EEHHEPHH 90
>APOL5_HUMAN (Q9BWW9) Apolipoprotein-L5 (Apolipoprotein L-V) (ApoL-V)| Length = 433 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 419 LPQHAAQGAHLRRGQVAHRGRQLHPEDAQRPARLRVHHHHPQ 294 LPQ A+Q RG+ R + PE ++ P V H P+ Sbjct: 350 LPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPR 391
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 11/52 (21%) Frame = -1 Query: 359 RQLHPEDAQRPARL-----------RVHHHHPQGEVRHTGRHRRTRPVQEQG 237 R+ P DA RPAR R H H P RHRR + Q G Sbjct: 943 RRPRPRDATRPARAADGEGDDGERKRRHRHGPPAHDDRERRHRRRKESQGSG 994 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,037,631 Number of Sequences: 219361 Number of extensions: 983456 Number of successful extensions: 3017 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2961 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
