>TRIM8_MOUSE (Q99PJ2) Tripartite motif protein 8 (RING finger protein 27)|
           (Glioblastoma-expressed RING finger protein)
          Length = 551

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 68  KSCFLFTYMPSSSLVFCPPLRLSFSDTPGRDKGLPKARMEKNSGCLH--SPPSSLQMV 235
           + C    +   S LV CP    +++  PG +K L    + +    LH   PP++L  V
Sbjct: 36  RGCIGEAWAKDSGLVRCPECNQAYNQKPGLEKNLKLTNIVEKFNALHVEKPPTALHCV 93

>TRIM8_HUMAN (Q9BZR9) Tripartite motif protein 8 (RING finger protein 27)|
           (Glioblastoma-expressed RING finger protein)
          Length = 551

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 68  KSCFLFTYMPSSSLVFCPPLRLSFSDTPGRDKGLPKARMEKNSGCLH--SPPSSLQMV 235
           + C    +   S LV CP    +++  PG +K L    + +    LH   PP++L  V
Sbjct: 36  RGCIGEAWAKDSGLVRCPECNQAYNQKPGLEKNLKLTNIVEKFNALHVEKPPAALHCV 93

>QUTA_EMENI (P10563) Quinic acid utilization activator|
          Length = 825

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 155 CLECRKKKDAMEGKRPSCSTACR*KGSMTCVKRMRPSQ 42
           C  CR KKD  +G +P CST      S  C  R  P +
Sbjct: 49  CDSCRSKKDKCDGAQPICSTCA--SLSRPCTYRANPKK 84

>MELPH_HUMAN (Q9BV36) Melanophilin (Exophilin-3) (Synaptotagmin-like protein 2a)|
           (Slp homolog lacking C2 domains a)
          Length = 600

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
 Frame = -3

Query: 313 KKGWVGICP*KQLHRLLAVQSAKWTKNHLKA*WRRMEAATVL--LHTRL----GEALIS 155
           ++GW  IC    L R++ + S +W   H+KA ++R  +A V+  LH RL    G  LIS
Sbjct: 99  EQGW--ICDPCHLARVVKIGSLEWYYEHVKARFKRFGSAKVIRSLHGRLQGGAGPELIS 155

>ATS12_MOUSE (Q811B3) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 12) (ADAM-TS
            12) (ADAM-TS12)
          Length = 1600

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 163  GPPQGAY-GEEQWLPPFSS-IKPSNGSWSTWQIAQREGGEAAFKDRFLP 303
            GPP  +Y GEE   PPFS+ ++ S  +WS      R+ G  A K R +P
Sbjct: 1205 GPPPTSYMGEEPSWPPFSTKMEGSLPAWSFKNETPRDDGMIAEKSRKIP 1253

>YN25_SCHPO (O59741) Putative transcriptional regulatory protein C530.05|
          Length = 743

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 164 PYLCLECRKKKDAMEGKRPSCSTACR*KGSMTCVKRMRPSQ 42
           P  C  CRK+K   +GK+P+CS        + CV   RP +
Sbjct: 8   PRACDMCRKRKIRCDGKQPACSNCV--SHGIPCVFTARPKR 46

>HRB_MOOTA (Q9FDN6) High molecular weight rubredoxin (Nitric oxide reductase|
           NADH:FprA oxidoreductase)
          Length = 229

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 278 ASPPSRCAICQVDQEPFEGLMEENGGSHCSSPYAPWGGPYLCLECRKKKDAME 120
           ASP  +C IC    +P +G  +   G    +P+A     + C  C   KDA E
Sbjct: 177 ASPKYQCTICNYVYDPVQG--DPEHGIAPGTPFADLPEDWTCPICGAGKDAFE 227

>OM1A_CHLTR (P23732) Major outer membrane protein, serovar A precursor (MOMP)|
          Length = 396

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 477 SSFDVATVIPKEKSEQAQVSSFS*KVTQFSWKVWRQVRLYWFCGGA 340
           S FD A ++P     QA V  ++   T F+W V  +  L W CG A
Sbjct: 168 SGFDTANIVPNTALNQAVVELYT--DTTFAWSVGARAAL-WECGCA 210

>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan|
           core protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 27/70 (38%), Positives = 32/70 (45%)
 Frame = +2

Query: 35  FYTEKDASF*HKSCFLFTYMPSSSLVFCPPLRLSFSDTPGRDKGLPKARMEKNSGCLHSP 214
           FY E  AS     CF  T +  SSL F   +RLSF D P   KG+    M    G    P
Sbjct: 510 FYLEDSASCLPCFCFGVTNVCQSSLRFRDQIRLSF-DQPNDFKGV-NVTMPSQPGV--PP 565

Query: 215 PSSLQMVLGP 244
            SS Q+ + P
Sbjct: 566 LSSTQLQIDP 575

>CEND1_HUMAN (Q8WZ64) Centaurin-delta 1 (Cnt-d1) (Arf-GAP, Rho-GAP, ankyrin repeat|
            and pleckstrin homology domain-containing protein 2)
            (PARX protein)
          Length = 1704

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 328  ALQCWKKGWVGICP*KQLHRLLAVQSAKWTKNHLKA*WRRMEAATVLLHTRLGEALISAW 149
            AL  W+KGW  +     LH  L +Q  +  + HL    RR++  T+    + GE L    
Sbjct: 1028 ALDQWRKGWFAMDK-SSLHFCLQMQEVQGDRMHL----RRLQELTISTMVQNGEKLDVLL 1082

Query: 148  SVGKRKT 128
             V K +T
Sbjct: 1083 LVEKGRT 1089

>NIRA_EMENI (P28348) Nitrogen assimilation transcription factor nirA|
          Length = 892

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 155 CLECRKKKDAMEGKRPSCSTACR*KGSMTCV 63
           C+ CR++K   +G  PSC+ AC      TCV
Sbjct: 42  CIACRRRKSKCDGNLPSCA-ACSSVYHTTCV 71

>YL278_YEAST (Q05854) Putative transcriptional regulatory protein YLR278C|
          Length = 1341

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 155 CLECRKKKDAMEGKRPSCSTACR*KGSMTCVK 60
           CL CR++K   + K PSC TAC  K  + CV+
Sbjct: 41  CLLCRRRKQRCDHKLPSC-TACL-KAGIKCVQ 70

>RL2_CAMJE (Q9PLX4) 50S ribosomal protein L2|
          Length = 276

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 25/78 (32%), Positives = 33/78 (42%)
 Frame = -2

Query: 365 ASIGSVEELFEEGSAMLEERLGRNLSLKAASPPSRCAICQVDQEPFEGLMEENGGSHCSS 186
           ASIG V    EE + +   + GRN            A+  VD     G  ++N G H   
Sbjct: 191 ASIGEVGN--EEWANVTIGKAGRNRHRGIRPQTRGSAMNPVDHPHGGGEGKKNSGRH--- 245

Query: 185 PYAPWGGPYLCLECRKKK 132
           P  PWG P    + R+KK
Sbjct: 246 PVTPWGKPTKGAKTRRKK 263

>UL56_HHV1E (P36297) Protein UL56|
          Length = 233

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
 Frame = -2

Query: 365 ASIGSVEELFEEGSAMLEERLGRN---LSLKAASPPSR---------CAICQVDQEPFEG 222
           A + S    F +     +   GRN   LSL   +PP           C  CQ  Q P E 
Sbjct: 10  AGLWSAGHAFADPPPPYDSLSGRNEGRLSLLIWTPPRTHLHRTLLGPCRPCQFRQPPPER 69

Query: 221 LMEENGGSHCSSPYAPWGGP 162
               +G +H   P  P G P
Sbjct: 70  ARRRSGAAHALPPSEPLGAP 89

>TRI36_HUMAN (Q9NQ86) Tripartite motif protein 36 (Zinc-binding protein Rbcc728)|
           (RING finger protein 98)
          Length = 728

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -2

Query: 371 KSASIGSVEELFEEGSAMLEERLGRNLSLKAASPPSRCAICQVDQEPFEGLMEENG 204
           K  +I   E+LFE    +LEER    L    +S   R    Q   E ++GL+E NG
Sbjct: 296 KEEAITHFEKLFE----VLEERKSSVLKAIDSSKKLRLDKFQTQMEEYQGLLENNG 347

>CAT8_YEAST (P39113) Regulatory protein CAT8|
          Length = 1433

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 155 CLECRKKKDAMEGKRPSCS 99
           C  CR KK   +GKRP CS
Sbjct: 70  CDRCRSKKTRCDGKRPQCS 88

>POLS_CHIKN (Q5WQY5) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1248

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 138 FPTLQAEIRASPRRVWRRTVAASILLHQAFKWFLVHLADC 257
           +  LQA +  SPRR  RR++  +  +++A + +L H  DC
Sbjct: 309 YQLLQASLTCSPRRQ-RRSIKDNFNVYKATRPYLAHCPDC 347

>YM12_PARTE (P15613) Hypothetical 31.1 kDa protein (ORF12)|
          Length = 265

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 209 SPPSSLQMVLGPLGRLHSEKAVKLLLRTDSYPTFLPTLQSLLQIAPPQNQ*RRTCLQTFQ 388
           SP +    ++ P+G         L+ +++SY   LPT ++L + AP Q+   R C+  F 
Sbjct: 192 SPEAQNLKLIDPVG--------SLIEQSNSYADRLPTRRTLRKPAPTQSSMSRLCILLFS 243

Query: 389 L 391
           L
Sbjct: 244 L 244

>LYAM2_CANFA (P33730) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 611

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 407 RRSHSSVGKFGGKSASIGSVEELFE-EGSAMLE 312
           R +HSS G+F  KS+   S EE FE  GSA LE
Sbjct: 443 RCAHSSTGEFTYKSSCAFSCEEGFELHGSAQLE 475

>PUSH_ARATH (O22928) Putative tRNA pseudouridine synthase (EC 5.4.99.-)|
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 510

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = -3

Query: 454 YPQREIRTSSSLFFFVEGHTVQLESLEASPP-----LLVLWRSYLKKALQCWKKGWVG 296
           YP R IR + +L  F      Q  S   SPP     L   W SY KK +   + G+VG
Sbjct: 17  YPTRLIRVTPALLRFSSSAAFQPSSTSLSPPSSDNFLADKWESYRKKKVVI-RIGYVG 73

>YLP3_PSEPU (P31049) Hypothetical 44.7 kDa methyltransferase in lpd-3 5'region|
           (EC 2.1.1.-) (ORF3)
          Length = 394

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 430 SSSLFFFVEGHTVQLESLEASPP--LLVLWRSYLKKALQCWKKGWVGICP*KQLHRLLAV 257
           + +L  + E    QL    A  P   L +WR YL      ++KGW+       LH++LAV
Sbjct: 322 AKTLHHWSENLENQLHKAAALVPEKTLRIWRLYLAGCAYAFEKGWI------NLHQILAV 375

Query: 256 QSAKWTKNHLKA*WRR 209
           +   +   H    W R
Sbjct: 376 K--PYADGHHDLPWTR 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,764,126
Number of Sequences: 219361
Number of extensions: 1769998
Number of successful extensions: 5036
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5031
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)