>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 261

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -1

Query: 445 EDVGVKLDRPDGDEVIPGAEEVAAAE 368
           ED+G KLDRP  DE + G +EVAAAE
Sbjct: 237 EDIGTKLDRPAEDEAMAG-QEVAAAE 261

>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13|
           (Nucleotide-binding oligomerization domain protein 14)
          Length = 1043

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 148 HIWQE*TKYLVSTQNLHPESNTNKTR*LNA--G*ECRQKYSRNQPSKLTTKFTTPRWHIY 321
           H W      LV+ +NLH    +N     ++  G     K  R +  KLT K  TP W + 
Sbjct: 713 HAWNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPRCKVQKLTCKSVTPEWVLQ 772

Query: 322 HLLDKKQQNS 351
            L+   Q NS
Sbjct: 773 DLIIALQGNS 782

>RS3A_HELAN (P49198) 40S ribosomal protein S3a|
          Length = 259

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = -1

Query: 445 EDVGVKLDRPDGDEVIPGAEEVAAA 371
           EDVGVKLDRP  +E  P A EV  A
Sbjct: 236 EDVGVKLDRP-AEEAAPEATEVIGA 259

>YR297_MIMIV (Q5UPY3) Hypothetical protein R297|
          Length = 168

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 253 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 360
           ++Y+ NQP++L T+   P ++  +  + +  N +FY
Sbjct: 80  KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,696,531
Number of Sequences: 219361
Number of extensions: 1098402
Number of successful extensions: 2257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2257
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)