Clone Name	rbart43c03
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, par...	123	5e-25
2	gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRN...	76	1e-10
3	gb|BT016390.1| Zea mays clone Contig223 mRNA sequence	54	4e-04
4	gb|AY109383.1| Zea mays CL7224_1 mRNA sequence	54	4e-04
5	emb|Z25769.1|BRSPSG B.rapa mRNA for S phase specific gene	50	0.006
6	gb|L23553.1|BRRSPSK Brassica rapa S-phase-specific (BIS289) mRNA...	50	0.006
7	gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal prot...	48	0.025
8	gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence	46	0.097
9	gb|AY753062.1| Penaeus monodon clone t2603 microsatellite sequence	44	0.38
10	gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex B...	44	0.38
11	gb|AC120305.6| Homo sapiens 3 BAC RP11-570H17 (Roswell Park Canc...	44	0.38
12	ref|NM_119633.2| Arabidopsis thaliana structural constituent of ...	42	1.5
13	gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6...	42	1.5
14	gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete se...	42	1.5
15	gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete se...	42	1.5
16	gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome	42	1.5
17	emb|Z93378.1|CEF19H8 Caenorhabditis elegans Cosmid F19H8, comple...	42	1.5
18	gb|BT022161.1| Drosophila melanogaster IP01358 full insert cDNA	42	1.5
19	emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, ...	42	1.5
20	emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, ...	42	1.5
21	emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BA...	42	1.5
22	ref|NM_206456.1| Drosophila melanogaster rotund CG32466-RB, tran...	42	1.5
23	ref|NM_141458.2| Drosophila melanogaster rotund CG32466-RA, tran...	42	1.5
24	gb|AC112910.3| Homo sapiens 3 BAC RP11-273F12 (Roswell Park Canc...	42	1.5
25	gb|AF395905.1|AF395905 Drosophila melanogaster rotund mRNA, comp...	42	1.5
26	gb|AF395904.1|AF395904 Drosophila melanogaster roughened eye mRN...	42	1.5
27	gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ri...	42	1.5
28	gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	42	1.5
29	gb|AC160763.3| Mus musculus BAC clone RP23-238A4 from chromosome...	42	1.5
30	gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, r...	42	1.5
31	emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Co...	42	1.5
32	emb|BX828268.1|CNS0A2YE Arabidopsis thaliana Full-length cDNA Co...	42	1.5
33	gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosom...	42	1.5
34	gb|AC008173.2| Homo sapiens BAC clone RP11-374F15 from 2, comple...	42	1.5
35	emb|BX248129.5| Zebrafish DNA sequence from clone CH211-196M16 i...	42	1.5
36	emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-spe...	42	1.5
37	ref|NM_209036.1| Eremothecium gossypii ACR281Cp (ACR281C), mRNA	42	1.5
38	gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12...	42	1.5
39	gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome...	40	6.0
40	gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosom...	40	6.0
41	gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CI...	40	6.0
42	emb|AL357793.6| Human DNA sequence from clone RP11-98G13 on chro...	40	6.0
43	emb|AL356389.20| Human DNA sequence from clone RP11-352P4 on chr...	40	6.0
44	emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chro...	40	6.0
45	emb|AL008712.1|HS84F12 Human DNA sequence from clone RP1-84F12 o...	40	6.0
46	emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, ...	40	6.0
47	emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, B...	40	6.0
48	gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence	40	6.0
49	gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence	40	6.0
50	gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complet...	40	6.0
51	dbj|AK009380.1| Mus musculus adult male tongue cDNA, RIKEN full-...	40	6.0
52	gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome...	40	6.0
53	gb|AC000085.5| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In...	40	6.0
54	gb|AC000073.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3...	40	6.0
55	gb|AC109347.3| Homo sapiens BAC clone RP11-73K9 from 4, complete...	40	6.0
56	gb|AC105756.5| Homo sapiens BAC clone RP11-78A21 from 4, complet...	40	6.0
57	gb|AC140899.3| Homo sapiens chromosome 16 clone RP11-792K9, comp...	40	6.0
58	ref|XM_231763.3| PREDICTED: Rattus norvegicus nuclear factor, er...	40	6.0
59	emb|AL954674.6| Zebrafish DNA sequence from clone CH211-282K23, ...	40	6.0
60	gb|AC000055.1|HSAC000055 Human PAC clone DJ073F11 from Xq23, com...	40	6.0
61	gb|AF213884.1|AF213884S1 Homo sapiens nuclear factor of kappa li...	40	6.0
62	emb|BX248136.12| Zebrafish DNA sequence from clone DKEY-81B15 in...	40	6.0
63	emb|AL049777.5|CNS00002 Human chromosome 14 DNA sequence BAC R-9...	40	6.0
64	gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA...	40	6.0
65	dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds	40	6.0

---

>gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds
          Length = 342

 Score =  123 bits (62), Expect = 5e-25
 Identities = 79/84 (94%), Gaps = 3/84 (3%)
 Strand = Plus / Minus

                                                                       
Query: 365 ctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccat---caggcct 421
           |||||||||||||||||||||||||||||||||||||||||| || ||||   |||||||
Sbjct: 342 ctactcagcagcagcaacctcctccgcaccaggaatgacctcgtccccatcagcaggcct 283

                                   
Query: 422 gtcaagcttcacaccaacatcctc 445
           ||||||||||||||||||||||||
Sbjct: 282 gtcaagcttcacaccaacatcctc 259

---

>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds
          Length = 382

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 364 tctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccatcag 417
           ||||||| ||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 257 tctactcggcagcagcaacctcctcagcaccggggatgacctcatctccatcag 204



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 269 atcagccatcaaaactgactaca-aagttcacgaca 303
           ||||||||||||||||||||||| ||||||||||||
Sbjct: 365 atcagccatcaaaactgactacagaagttcacgaca 330

---

>gb|BT016390.1| Zea mays clone Contig223 mRNA sequence
          Length = 1104

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 415 caggcctgtcaagcttcacaccaacatcctc 445
           ||||||| |||||||||||||||||||||||
Sbjct: 812 caggcctctcaagcttcacaccaacatcctc 782

---

>gb|AY109383.1| Zea mays CL7224_1 mRNA sequence
          Length = 1236

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 415 caggcctgtcaagcttcacaccaacatcctc 445
           ||||||| |||||||||||||||||||||||
Sbjct: 383 caggcctctcaagcttcacaccaacatcctc 413

---

>emb|Z25769.1|BRSPSG B.rapa mRNA for S phase specific gene
          Length = 1050

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 417 ggcctgtcaagcttcacaccaacatcctc 445
           |||||||||| ||||||||||||||||||
Sbjct: 848 ggcctgtcaaccttcacaccaacatcctc 820

---

>gb|L23553.1|BRRSPSK Brassica rapa S-phase-specific (BIS289) mRNA, complete cds
          Length = 1050

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 417 ggcctgtcaagcttcacaccaacatcctc 445
           |||||||||| ||||||||||||||||||
Sbjct: 848 ggcctgtcaaccttcacaccaacatcctc 820

---

>gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal protein S3 mRNA,
           partial cds
          Length = 462

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 415 caggcctgtcaagcttcacaccaa 438
           ||||||||||||||||||||||||
Sbjct: 169 caggcctgtcaagcttcacaccaa 146

---

>gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence
          Length = 1229

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 415 caggcctgtcaagcttcacaccaacatcctc 445
           ||||||| ||||||||||||||||| |||||
Sbjct: 281 caggcctctcaagcttcacaccaacgtcctc 311

---

>gb|AY753062.1| Penaeus monodon clone t2603 microsatellite sequence
          Length = 656

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 9   aaatttccaattttattttcat 30
           ||||||||||||||||||||||
Sbjct: 587 aaatttccaattttattttcat 608

---

>gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex BAC MMU404O15, complete
             sequence
          Length = 157177

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 4     ggagtaaatttccaattttatt 25
             ||||||||||||||||||||||
Sbjct: 50526 ggagtaaatttccaattttatt 50505

---

>gb|AC120305.6| Homo sapiens 3 BAC RP11-570H17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 95234

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    aattttattttcataatagatt 38
             ||||||||||||||||||||||
Sbjct: 73847 aattttattttcataatagatt 73868

---

>ref|NM_119633.2| Arabidopsis thaliana structural constituent of ribosome AT4G34670
           mRNA, complete cds
          Length = 1093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 417 ggcctgtcaagcttcacaccaacatcctc 445
           |||||||| | ||||||||||||||||||
Sbjct: 818 ggcctgtctaccttcacaccaacatcctc 790

---

>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the
           complete sequence
          Length = 253001

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 11  atttccaattttattttcata 31
           |||||||||||||||||||||
Sbjct: 764 atttccaattttattttcata 744

---

>gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete sequence
          Length = 184109

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    tccaattttattttcataata 34
             |||||||||||||||||||||
Sbjct: 93659 tccaattttattttcataata 93679

---

>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence
          Length = 181178

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     tccaattttattttcataata 34
              |||||||||||||||||||||
Sbjct: 101014 tccaattttattttcataata 100994

---

>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     tccaattttattttcataata 34
              |||||||||||||||||||||
Sbjct: 131704 tccaattttattttcataata 131684

---

>emb|Z93378.1|CEF19H8 Caenorhabditis elegans Cosmid F19H8, complete sequence
          Length = 31423

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     aaatttccaattttattttcataat 33
             |||||||||||||| ||||||||||
Sbjct: 17701 aaatttccaattttcttttcataat 17725

---

>gb|BT022161.1| Drosophila melanogaster IP01358 full insert cDNA
          Length = 3118

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 372  gcagcagcaacctcctccgca 392
            |||||||||||||||||||||
Sbjct: 1211 gcagcagcaacctcctccgca 1231

---

>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82
          Length = 195165

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 417  ggcctgtcaagcttcacaccaacatcctc 445
            |||||||| | ||||||||||||||||||
Sbjct: 4951 ggcctgtctaccttcacaccaacatcctc 4923

---

>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
          Length = 195921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 417    ggcctgtcaagcttcacaccaacatcctc 445
              |||||||| | ||||||||||||||||||
Sbjct: 195872 ggcctgtctaccttcacaccaacatcctc 195844

---

>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project)
          Length = 125502

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 417   ggcctgtcaagcttcacaccaacatcctc 445
             |||||||| | ||||||||||||||||||
Sbjct: 86183 ggcctgtctaccttcacaccaacatcctc 86155

---

>ref|NM_206456.1| Drosophila melanogaster rotund CG32466-RB, transcript variant B (rn),
            mRNA
          Length = 2444

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 372  gcagcagcaacctcctccgca 392
            |||||||||||||||||||||
Sbjct: 1684 gcagcagcaacctcctccgca 1704

---

>ref|NM_141458.2| Drosophila melanogaster rotund CG32466-RA, transcript variant A (rn),
            mRNA
          Length = 3661

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 372  gcagcagcaacctcctccgca 392
            |||||||||||||||||||||
Sbjct: 2901 gcagcagcaacctcctccgca 2921

---

>gb|AC112910.3| Homo sapiens 3 BAC RP11-273F12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 115927

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      gagtaaatttccaattttatt 25
              |||||||||||||||||||||
Sbjct: 110463 gagtaaatttccaattttatt 110483

---

>gb|AF395905.1|AF395905 Drosophila melanogaster rotund mRNA, complete cds
          Length = 3658

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 372  gcagcagcaacctcctccgca 392
            |||||||||||||||||||||
Sbjct: 2898 gcagcagcaacctcctccgca 2918

---

>gb|AF395904.1|AF395904 Drosophila melanogaster roughened eye mRNA, complete cds
          Length = 2444

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 372  gcagcagcaacctcctccgca 392
            |||||||||||||||||||||
Sbjct: 1684 gcagcagcaacctcctccgca 1704

---

>gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ribosomal protein
           (At4g34670; T4L20.250) mRNA, complete cds
          Length = 1094

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 417 ggcctgtcaagcttcacaccaacatcctc 445
           |||||||| | ||||||||||||||||||
Sbjct: 818 ggcctgtctaccttcacaccaacatcctc 790

---

>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 372    gcagcagcaacctcctccgca 392
              |||||||||||||||||||||
Sbjct: 867462 gcagcagcaacctcctccgca 867442

---

>gb|AC160763.3| Mus musculus BAC clone RP23-238A4 from chromosome 17, complete
            sequence
          Length = 215626

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  aagtactcaagaaatcagccatcaa 280
            |||||||||||||| ||||||||||
Sbjct: 3171 aagtactcaagaaaccagccatcaa 3195

---

>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone
              BACR01C11, complete sequence
          Length = 176991

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 372    gcagcagcaacctcctccgca 392
              |||||||||||||||||||||
Sbjct: 137461 gcagcagcaacctcctccgca 137441

---

>emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB21ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 836

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 417 ggcctgtcaagcttcacaccaacatcctc 445
           |||||||| | ||||||||||||||||||
Sbjct: 647 ggcctgtctaccttcacaccaacatcctc 619

---

>emb|BX828268.1|CNS0A2YE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH6ZD12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1008

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 417 ggcctgtcaagcttcacaccaacatcctc 445
           |||||||| | ||||||||||||||||||
Sbjct: 803 ggcctgtctaccttcacaccaacatcctc 775

---

>gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosome 17, complete
             sequence
          Length = 191047

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 256   aagtactcaagaaatcagccatcaa 280
             |||||||||||||| ||||||||||
Sbjct: 73532 aagtactcaagaaaccagccatcaa 73508

---

>gb|AC008173.2| Homo sapiens BAC clone RP11-374F15 from 2, complete sequence
          Length = 193893

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     aatttccaattttattttcat 30
              |||||||||||||||||||||
Sbjct: 100614 aatttccaattttattttcat 100594

---

>emb|BX248129.5| Zebrafish DNA sequence from clone CH211-196M16 in linkage group 17,
             complete sequence
          Length = 217707

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 8     taaatttccaattttattttcataa 32
             ||||||||||||||| |||||||||
Sbjct: 44653 taaatttccaatttttttttcataa 44629

---

>emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein
          Length = 906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 417 ggcctgtcaagcttcacaccaacatcctc 445
           |||||||| | ||||||||||||||||||
Sbjct: 740 ggcctgtctaccttcacaccaacatcctc 712

---

>ref|NM_209036.1| Eremothecium gossypii ACR281Cp (ACR281C), mRNA
          Length = 3780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 372 gcagcagcaacctcctccgca 392
           |||||||||||||||||||||
Sbjct: 846 gcagcagcaacctcctccgca 866

---

>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete
              sequence
          Length = 301379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 372    gcagcagcaacctcctccgca 392
              |||||||||||||||||||||
Sbjct: 188870 gcagcagcaacctcctccgca 188850

---

>gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome 7, complete sequence
          Length = 232770

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   ctcctccgcaccaggaatga 402
             ||||||||||||||||||||
Sbjct: 38479 ctcctccgcaccaggaatga 38460

---

>gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosome 7, complete sequence
          Length = 217404

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    ctcctccgcaccaggaatga 402
              ||||||||||||||||||||
Sbjct: 181258 ctcctccgcaccaggaatga 181239

---

>gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2, complete sequence
          Length = 213541

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    aaacacatatggcaggaata 164
              ||||||||||||||||||||
Sbjct: 148586 aaacacatatggcaggaata 148567

---

>emb|AL357793.6| Human DNA sequence from clone RP11-98G13 on chromosome 1 Contains a novel
              gene and part of a novel gene, complete sequence
          Length = 145630

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    atgcaaacataaaacacata 153
              ||||||||||||||||||||
Sbjct: 114195 atgcaaacataaaacacata 114214

---

>emb|AL356389.20| Human DNA sequence from clone RP11-352P4 on chromosome 1 Contains the
            3' end of the gene for maba1 (KIAA1324) and the SARS gene
            for seryl-tRNA synthetase, complete sequence
          Length = 97114

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   caggagccactacatgcaac 60
            ||||||||||||||||||||
Sbjct: 8548 caggagccactacatgcaac 8529

---

>emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chromosome 6, complete
             sequence
          Length = 139086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ccatcaaaactgactacaaa 293
             ||||||||||||||||||||
Sbjct: 50732 ccatcaaaactgactacaaa 50751

---

>emb|AL008712.1|HS84F12 Human DNA sequence from clone RP1-84F12 on chromosome Xq25-26.3
             Contains part of the GPC3 gene for glypican 3, complete
             sequence
          Length = 78011

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   cagcagcagcaacctcctcc 389
             ||||||||||||||||||||
Sbjct: 24008 cagcagcagcaacctcctcc 23989

---

>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
          Length = 199075

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ataaactaaatatttagttt 181
             ||||||||||||||||||||
Sbjct: 64933 ataaactaaatatttagttt 64952

---

>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
          Length = 94301

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ataaactaaatatttagttt 181
             ||||||||||||||||||||
Sbjct: 45652 ataaactaaatatttagttt 45671

---

>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   cctcatctccatcaggcctg 422
             ||||||||||||||||||||
Sbjct: 15763 cctcatctccatcaggcctg 15782

---

>gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence
          Length = 72820

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     ggagtaaatttccaattttatttt 27
             ||||| ||||||||||||||||||
Sbjct: 13618 ggagttaatttccaattttatttt 13641

---

>gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complete sequence
          Length = 193980

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      ggagtaaatttccaattttatttt 27
              ||||| ||||||||||||||||||
Sbjct: 173845 ggagttaatttccaattttatttt 173868

---

>dbj|AK009380.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310016D03 product:unclassifiable, full
            insert sequence
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 16   caattttattttcataatagattt 39
            ||||||||||| ||||||||||||
Sbjct: 1491 caattttatttgcataatagattt 1514

---

>gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome 12, complete sequence
          Length = 154864

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    caattttattttcataatagattt 39
             ||||||||||| ||||||||||||
Sbjct: 49268 caattttatttgcataatagattt 49245

---

>gb|AC000085.5| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In DGCR Region, complete
             sequence
          Length = 100152

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ggagtaaatttccaattttatttt 27
             ||||| ||||||||||||||||||
Sbjct: 80213 ggagttaatttccaattttatttt 80190

---

>gb|AC000073.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3 In DGCR Region,
             complete sequence
          Length = 39706

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ggagtaaatttccaattttatttt 27
             ||||| ||||||||||||||||||
Sbjct: 16227 ggagttaatttccaattttatttt 16204

---

>gb|AC109347.3| Homo sapiens BAC clone RP11-73K9 from 4, complete sequence
          Length = 109668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 16     caattttattttcataatagattt 39
              ||||||||||||||||||| ||||
Sbjct: 101646 caattttattttcataatatattt 101669

---

>gb|AC105756.5| Homo sapiens BAC clone RP11-78A21 from 4, complete sequence
          Length = 156394

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    ccaattttattttcataata 34
             ||||||||||||||||||||
Sbjct: 24665 ccaattttattttcataata 24684

---

>gb|AC140899.3| Homo sapiens chromosome 16 clone RP11-792K9, complete sequence
          Length = 194490

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 371    agcagcagcaacctcctccgcaccagga 398
              ||||||| ||||||||||| ||||||||
Sbjct: 176973 agcagcaacaacctcctcctcaccagga 176946

---

>ref|XM_231763.3| PREDICTED: Rattus norvegicus nuclear factor, erythroid derived 2,
            like 3 (predicted) (Nfe2l3_predicted), mRNA
          Length = 3024

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  acatatatcatcttctagat 333
            ||||||||||||||||||||
Sbjct: 2643 acatatatcatcttctagat 2624

---

>emb|AL954674.6| Zebrafish DNA sequence from clone CH211-282K23, complete sequence
          Length = 151174

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     taaatttccaattttatttt 27
             ||||||||||||||||||||
Sbjct: 12871 taaatttccaattttatttt 12890

---

>gb|AC000055.1|HSAC000055 Human PAC clone DJ073F11 from Xq23, complete sequence
          Length = 93578

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  ctagataagaagcagcaaaa 347
            ||||||||||||||||||||
Sbjct: 7414 ctagataagaagcagcaaaa 7395

---

>gb|AF213884.1|AF213884S1 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in
             B-cells 1 (NFKB1) gene, complete cds
          Length = 190000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ggagtaaatttccaattttatttt 27
             ||||| ||||||||||||||||||
Sbjct: 51038 ggagttaatttccaattttatttt 51015

---

>emb|BX248136.12| Zebrafish DNA sequence from clone DKEY-81B15 in linkage group 20,
              complete sequence
          Length = 222316

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     attttattttcataatagat 37
              ||||||||||||||||||||
Sbjct: 188440 attttattttcataatagat 188421

---

>emb|AL049777.5|CNS00002 Human chromosome 14 DNA sequence BAC R-966I7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170307

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    caattttattttcataatag 35
             ||||||||||||||||||||
Sbjct: 64931 caattttattttcataatag 64950

---

>gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA, complete cds
          Length = 982

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 415 caggcctgtcaagcttcacaccaacatc 442
           |||||||||| | |||||||||||||||
Sbjct: 808 caggcctgtccaacttcacaccaacatc 781

---

>dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds
          Length = 1050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 426 agcttcacaccaacatcctc 445
           ||||||||||||||||||||
Sbjct: 749 agcttcacaccaacatcctc 730


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,816,029
Number of Sequences: 3902068
Number of extensions: 5816029
Number of successful extensions: 121699
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121561
Number of HSP's gapped (non-prelim): 137
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---