ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPBB_HUMAN (Q93100) Phosphorylase b kinase beta regulatory chain... 30 2.1
2CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (C... 28 6.0
3TIG_WOLPM (Q73I58) Trigger factor (TF) 28 7.9

>KPBB_HUMAN (Q93100) Phosphorylase b kinase beta regulatory chain|
           (Phosphorylase kinase beta subunit)
          Length = 1092

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = +1

Query: 133 MTPATHHTTGGIPTVIKELYITESSPS*FT-------SSDRIYATNCNGRD 264
           +TP  HHTT G P V K  Y+    P+ F         S + + +NC GRD
Sbjct: 391 LTPVLHHTTEGYPVVPKYYYV----PADFVEYEKNNPGSQKRFPSNC-GRD 436



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>CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5)|
           (CCR-5) (CCR5) (CD195 antigen)
          Length = 352

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 246 CCIDPIRAGKLGGRGLRYIELFYYRWYAPCSMVCGRCHPCTIF 118
           CC++PI    +G +   Y+ +F+ +  A C      C  C+IF
Sbjct: 290 CCVNPIIYAFVGEKFRNYLLVFFQKHIAKCF-----CECCSIF 327



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>TIG_WOLPM (Q73I58) Trigger factor (TF)|
          Length = 444

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 23  ILLLPHVSTDITTKRVLQSSEYNKQQQQLIKEKIVQ 130
           +++  +VS D+   RVL+  E NKQ Q+L++ + ++
Sbjct: 379 VIVNQYVSKDVQFDRVLKHFESNKQFQELVRGQALE 414


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,155,154
Number of Sequences: 219361
Number of extensions: 696406
Number of successful extensions: 1891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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