ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun... 37 0.026
2RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 35 0.058
3RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 35 0.058
4RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 35 0.058
5RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun... 35 0.058
6RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun... 35 0.075
7RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun... 35 0.075
8RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subun... 34 0.13
9RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun... 34 0.13
10RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun... 34 0.13
11RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun... 34 0.17
12RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun... 33 0.22
13YDB4_SCHPO (Q10357) Hypothetical protein C22E12.04 in chromosome I 33 0.37
14IBB1_SOYBN (P01055) Bowman-Birk type proteinase inhibitor precur... 31 1.4
15RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun... 29 4.1
16RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (E... 28 7.1
17RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (E... 28 7.1
18PYRF_STRA5 (Q8DZQ2) Orotidine 5'-phosphate decarboxylase (EC 4.1... 28 7.1
19PYRF_STRA3 (Q8E5F0) Orotidine 5'-phosphate decarboxylase (EC 4.1... 28 7.1
20SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB s... 28 9.2
21TXR1_MACRV (P61233) Raventoxin-1 (Raventoxin I) 28 9.2 
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +PGY   +P Y   +PGY             Y   +
Sbjct: 1546 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1605

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1606 PSYSPTSPSY 1615



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1637 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1696

Query: 395  PRYDMVATGY 424
            P Y   + GY
Sbjct: 1697 PAYSPTSPGY 1706



 Score = 35.4 bits (80), Expect = 0.058
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1651 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1710

Query: 395  PRYDMVATGYG 427
            P Y   +  YG
Sbjct: 1711 PSYSPTSPSYG 1721



 Score = 34.7 bits (78), Expect = 0.098
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +PGY             Y   +
Sbjct: 1665 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTS 1724

Query: 395  PRYDMVATGY 424
            P Y+  +  Y
Sbjct: 1725 PSYNPQSAKY 1734



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1588 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1647

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1648 PAYSPTSPAY 1657



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATGY 424
            +P ++  +P YS  +PGY   +P Y   +PGY             Y   +P Y   +  Y
Sbjct: 1542 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1601



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1644 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1703

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1704 PGYSPTSPSY 1713



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1602 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1661

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1662 PSYSPTSPSY 1671



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1595 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1654

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1655 PAYSPTSPSY 1664



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +PGY   +P Y   +P Y             Y   +
Sbjct: 1560 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1619

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1620 PSYSPTSPSY 1629



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1630 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1689

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1690 PSYSPTSPAY 1699



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1623 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1682

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1683 PSYSPTSPSY 1692



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1616 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1675

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1676 PSYSPTSPSY 1685



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1609 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1668

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1669 PSYSPTSPSY 1678



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 16/72 (22%), Positives = 28/72 (38%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
            T +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y  
Sbjct: 1579 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1638

Query: 389  FAPRYDMVATGY 424
             +P Y   +  Y
Sbjct: 1639 TSPAYSPTSPAY 1650



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1658 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1717

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1718 PSYGPTSPSY 1727



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1574 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1633

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1634 PSYSPTSPAY 1643



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1567 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1626

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1627 PSYSPTSPSY 1636



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1553 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1612

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1613 PSYSPTSPSY 1622



 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATG 421
            +P ++  +P YS  +P Y   +P Y   +P Y             Y    P Y   +TG
Sbjct: 1757 SPNYSPTSPSYSPTSPSYSPSSPTYSPSSP-YSSGASPDYSPSAGYSPTLPGYSPSSTG 1814
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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 218 PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
           P +  +   +P ++  +P YS  +P Y   +PRY  ++P Y             Y   +P
Sbjct: 275 PTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSP 334

Query: 398 RYDMVATGY 424
           +Y   +  Y
Sbjct: 335 KYTPTSPSY 343



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 218 PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
           P +  +   +P+++  +P+YS  +P Y   TP+Y   +P Y             Y   +P
Sbjct: 352 PTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSP 411

Query: 398 RYDMVATGY 424
            Y   +  Y
Sbjct: 412 TYSPTSPKY 420



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 211 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTS 270

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 271 PNYTPTSPNY 280



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 183 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 242

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 243 PNYSPTSPNY 252



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 120 SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 179

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 180 PSYSPTSPSY 189



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 113 SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 172

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 173 PSYSPTSPSY 182



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 176 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 235

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 236 PSYSPTSPNY 245



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 169 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 228

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 229 PSYSPTSPSY 238



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 162 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 221

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 222 PSYSPTSPSY 231



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 155 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 214

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 215 PSYSPTSPSY 224



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 148 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 207

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 208 PSYSPTSPSY 217



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 141 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 200

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 201 PSYSPTSPSY 210



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 134 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 193

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 194 PSYSPTSPSY 203



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 204 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTS 263

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 264 PSYSPTSPNY 273



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 14/70 (20%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P Y+  +P Y   +P Y   +P Y             Y   +
Sbjct: 232 SPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 291

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 292 PSYSPTSPSY 301



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 190 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS 249

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 250 PNYTPTSPSY 259



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 127 SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 186

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 187 PSYSPTSPSY 196



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 218 PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
           P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +P
Sbjct: 107 PQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 166

Query: 398 RYDMVATGY 424
            Y   +  Y
Sbjct: 167 SYSPTSPSY 175



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 246 SPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSS 305

Query: 395 PRY 403
           PRY
Sbjct: 306 PRY 308



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 218 SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTS 277

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 278 PNYSPTSPSY 287



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 26/70 (37%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P +   +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 260 SPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS 319

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 320 PSYSPSSPSY 329



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 225 SPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTS 284

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 285 PSYSPTSPSY 294



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 197 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS 256

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 257 PSYSPTSPSY 266



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P+++  +P YS   P Y   +P Y   +P Y             Y   +
Sbjct: 358 SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS 417

Query: 395 PRYDMVATGY 424
           P+Y   +  Y
Sbjct: 418 PKYSPTSPTY 427



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P++   +P YS  +P Y   +P+Y   +P Y             Y    
Sbjct: 323 SPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTT 382

Query: 395 PRYDMVATGY 424
           P+Y   +  Y
Sbjct: 383 PKYSPTSPTY 392



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +PRY+  +P Y   +P Y   +P Y             Y   +
Sbjct: 288 SPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 347

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 348 PEYTPTSPKY 357



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 267 SPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSS 326

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 327 PSYSPTSPKY 336



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = +2

Query: 218 PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
           P +  +   +P +   +P+YS  +P Y   +P+Y   +P Y             Y   +P
Sbjct: 338 PTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP 397

Query: 398 RYDMVATGY 424
            Y   +  Y
Sbjct: 398 VYTPTSPKY 406



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/70 (21%), Positives = 26/70 (37%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P +   +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 239 SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS 298

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 299 PSYSPSSPRY 308



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +    P+++  +P YS  +P Y   +P+Y   +P Y             Y   +
Sbjct: 372 SPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTS 431

Query: 395 PR---YDMVATGY 424
           P+   Y   + GY
Sbjct: 432 PKGSTYSPTSPGY 444



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +PR+   +P Y+  +P Y   +P Y   +P Y             Y   +
Sbjct: 295 SPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTS 354

Query: 395 PRYDMVATGY 424
           P+Y   +  Y
Sbjct: 355 PKYSPTSPKY 364



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = +2

Query: 209 TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
           T  P +  +   +P ++  +P+Y+  +P Y   +P Y   +P Y             Y  
Sbjct: 314 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSP 373

Query: 389 FAPRYDMVATGY 424
            +P Y      Y
Sbjct: 374 TSPTYSPTTPKY 385



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +2

Query: 245 APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATGY 424
           +P +   +P YS  +P Y   +P+Y   +P Y             Y   +P+Y   +  Y
Sbjct: 312 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 371



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/69 (20%), Positives = 26/69 (37%)
 Frame = +2

Query: 218 PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
           P +  +   +P ++  +P Y+  +P Y   +P Y   +P Y             Y   +P
Sbjct: 254 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSP 313

Query: 398 RYDMVATGY 424
            Y   +  Y
Sbjct: 314 TYTPSSPSY 322



 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y  ++P Y   +P Y             Y   +
Sbjct: 281 SPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTS 340

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 341 PSYSPSSPEY 350



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/70 (20%), Positives = 28/70 (40%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P Y+  +P Y   +P+Y   +P Y             Y   +
Sbjct: 330 SPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTS 389

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 390 PTYSPTSPVY 399
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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P ++  +P YS  +P Y   +PRY  ++P Y             Y   +P
Sbjct: 1778 PTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSP 1837

Query: 398  RYDMVATGY 424
            +Y   +  Y
Sbjct: 1838 KYTPTSPSY 1846



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P+++  +P+YS  +P Y   TP+Y   +P Y             Y   +P
Sbjct: 1855 PASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSP 1914

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1915 TYSPTSPKY 1923



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1714 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTS 1773

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1774 PNYTPTSPNY 1783



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1686 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1746 PNYSPTSPNY 1755



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1623 SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1682

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1683 PSYSPTSPSY 1692



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1616 SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1675

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1676 PSYSPTSPSY 1685



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1679 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1738

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1739 PSYSPTSPNY 1748



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1672 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1731

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1732 PSYSPTSPSY 1741



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1665 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1724

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1725 PSYSPTSPSY 1734



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1658 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1717

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1718 PSYSPTSPSY 1727



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1651 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1710

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1711 PSYSPTSPSY 1720



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1644 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1704 PSYSPTSPSY 1713



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1637 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1696

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1697 PSYSPTSPSY 1706



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1707 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTS 1766

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1767 PSYSPTSPNY 1776



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 14/70 (20%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P Y+  +P Y   +P Y   +P Y             Y   +
Sbjct: 1735 SPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1795 PSYSPTSPSY 1804



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS 1752

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1753 PNYTPTSPSY 1762



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1630 SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1689

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1690 PSYSPTSPSY 1699



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +P
Sbjct: 1610 PQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1669

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1670 SYSPTSPSY 1678



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1749 SPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSS 1808

Query: 395  PRY 403
            PRY
Sbjct: 1809 PRY 1811



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1721 SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTS 1780

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1781 PNYSPTSPSY 1790



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 26/70 (37%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P +   +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1763 SPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS 1822

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1823 PSYSPSSPSY 1832



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1728 SPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTS 1787

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1788 PSYSPTSPSY 1797



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1700 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS 1759

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1760 PSYSPTSPSY 1769



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P+++  +P YS   P Y   +P Y   +P Y             Y   +
Sbjct: 1861 SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS 1920

Query: 395  PRYDMVATGY 424
            P+Y   +  Y
Sbjct: 1921 PKYSPTSPTY 1930



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P++   +P YS  +P Y   +P+Y   +P Y             Y    
Sbjct: 1826 SPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTT 1885

Query: 395  PRYDMVATGY 424
            P+Y   +  Y
Sbjct: 1886 PKYSPTSPTY 1895



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +PRY+  +P Y   +P Y   +P Y             Y   +
Sbjct: 1791 SPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 1850

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1851 PEYTPASPKY 1860



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1770 SPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSS 1829

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1830 PSYSPTSPKY 1839



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P +   +P+YS  +P Y   +P+Y   +P Y             Y   +P
Sbjct: 1841 PTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP 1900

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1901 VYTPTSPKY 1909



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/70 (21%), Positives = 26/70 (37%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P +   +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1742 SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS 1801

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1802 PSYSPSSPRY 1811



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +    P+++  +P YS  +P Y   +P+Y   +P Y             Y   +
Sbjct: 1875 SPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTS 1934

Query: 395  PR---YDMVATGY 424
            P+   Y   + GY
Sbjct: 1935 PKGSTYSPTSPGY 1947



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +PR+   +P Y+  +P Y   +P Y   +P Y             Y   +
Sbjct: 1798 SPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPAS 1857

Query: 395  PRYDMVATGY 424
            P+Y   +  Y
Sbjct: 1858 PKYSPTSPKY 1867



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
            T  P +  +   +P ++  +P+Y+  +P Y   +P Y   +P Y             Y  
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSP 1876

Query: 389  FAPRYDMVATGY 424
             +P Y      Y
Sbjct: 1877 TSPTYSPTTPKY 1888



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATGY 424
            +P +   +P YS  +P Y   +P+Y   +P Y             Y   +P+Y   +  Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY 1874



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/69 (20%), Positives = 26/69 (37%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P ++  +P Y+  +P Y   +P Y   +P Y             Y   +P
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSP 1816

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1817 TYTPSSPSY 1825



 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y  ++P Y   +P Y             Y   +
Sbjct: 1784 SPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTS 1843

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1844 PSYSPSSPEY 1853



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/70 (20%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P Y+  +P Y   +P+Y   +P Y             Y   +
Sbjct: 1833 SPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTS 1892

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1893 PTYSPTSPVY 1902
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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P ++  +P YS  +P Y   +PRY  ++P Y             Y   +P
Sbjct: 1778 PTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSP 1837

Query: 398  RYDMVATGY 424
            +Y   +  Y
Sbjct: 1838 KYTPTSPSY 1846



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P+++  +P+YS  +P Y   TP+Y   +P Y             Y   +P
Sbjct: 1855 PTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSP 1914

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1915 TYSPTSPKY 1923



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1714 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTS 1773

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1774 PNYTPTSPNY 1783



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1686 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1746 PNYSPTSPNY 1755



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1623 SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1682

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1683 PSYSPTSPSY 1692



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1616 SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1675

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1676 PSYSPTSPSY 1685



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1679 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1738

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1739 PSYSPTSPNY 1748



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1672 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1731

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1732 PSYSPTSPSY 1741



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1665 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1724

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1725 PSYSPTSPSY 1734



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1658 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1717

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1718 PSYSPTSPSY 1727



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1651 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1710

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1711 PSYSPTSPSY 1720



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1644 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1704 PSYSPTSPSY 1713



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1637 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1696

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1697 PSYSPTSPSY 1706



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1707 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTS 1766

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1767 PSYSPTSPNY 1776



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 14/70 (20%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P Y+  +P Y   +P Y   +P Y             Y   +
Sbjct: 1735 SPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1795 PSYSPTSPSY 1804



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS 1752

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1753 PNYTPTSPSY 1762



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1630 SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1689

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1690 PSYSPTSPSY 1699



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +P
Sbjct: 1610 PQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1669

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1670 SYSPTSPSY 1678



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1749 SPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSS 1808

Query: 395  PRY 403
            PRY
Sbjct: 1809 PRY 1811



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1721 SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTS 1780

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1781 PNYSPTSPSY 1790



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 26/70 (37%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P +   +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1763 SPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS 1822

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1823 PSYSPSSPSY 1832



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1728 SPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTS 1787

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1788 PSYSPTSPSY 1797



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1700 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS 1759

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1760 PSYSPTSPSY 1769



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P+++  +P YS   P Y   +P Y   +P Y             Y   +
Sbjct: 1861 SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS 1920

Query: 395  PRYDMVATGY 424
            P+Y   +  Y
Sbjct: 1921 PKYSPTSPTY 1930



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P++   +P YS  +P Y   +P+Y   +P Y             Y    
Sbjct: 1826 SPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTT 1885

Query: 395  PRYDMVATGY 424
            P+Y   +  Y
Sbjct: 1886 PKYSPTSPTY 1895



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +PRY+  +P Y   +P Y   +P Y             Y   +
Sbjct: 1791 SPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 1850

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1851 PEYTPTSPKY 1860



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1770 SPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSS 1829

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1830 PSYSPTSPKY 1839



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P +   +P+YS  +P Y   +P+Y   +P Y             Y   +P
Sbjct: 1841 PTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP 1900

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1901 VYTPTSPKY 1909



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/70 (21%), Positives = 26/70 (37%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P +   +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1742 SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS 1801

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1802 PSYSPSSPRY 1811



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +    P+++  +P YS  +P Y   +P+Y   +P Y             Y   +
Sbjct: 1875 SPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTS 1934

Query: 395  PR---YDMVATGY 424
            P+   Y   + GY
Sbjct: 1935 PKGSTYSPTSPGY 1947



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +PR+   +P Y+  +P Y   +P Y   +P Y             Y   +
Sbjct: 1798 SPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTS 1857

Query: 395  PRYDMVATGY 424
            P+Y   +  Y
Sbjct: 1858 PKYSPTSPKY 1867



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
            T  P +  +   +P ++  +P+Y+  +P Y   +P Y   +P Y             Y  
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876

Query: 389  FAPRYDMVATGY 424
             +P Y      Y
Sbjct: 1877 TSPTYSPTTPKY 1888



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATGY 424
            +P +   +P YS  +P Y   +P+Y   +P Y             Y   +P+Y   +  Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1874



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/69 (20%), Positives = 26/69 (37%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P ++  +P Y+  +P Y   +P Y   +P Y             Y   +P
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSP 1816

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1817 TYTPSSPSY 1825



 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y  ++P Y   +P Y             Y   +
Sbjct: 1784 SPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTS 1843

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1844 PSYSPSSPEY 1853



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/70 (20%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P Y+  +P Y   +P+Y   +P Y             Y   +
Sbjct: 1833 SPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTS 1892

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1893 PTYSPTSPVY 1902
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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +PRY   +P Y             Y   +
Sbjct: 1645 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTS 1704

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1705 PTYSPTSPSY 1714



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1617 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 1676

Query: 395  PRYDMVATGY 424
            PRY   +  Y
Sbjct: 1677 PRYSPTSPTY 1686



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
            T NP TS   F +P+++  +P YS  +P Y   +P+Y   +P Y             Y  
Sbjct: 1765 TYNP-TSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSP 1823

Query: 389  FAPRYDMVATGY 424
             +P Y   +  Y
Sbjct: 1824 SSPTYSPSSPTY 1835



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = +2

Query: 242  VAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATG 421
            V+P ++  +P YS  +P Y   +P Y   +P Y             Y   +P Y   +  
Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671

Query: 422  Y 424
            Y
Sbjct: 1672 Y 1672



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/71 (21%), Positives = 29/71 (40%)
 Frame = +2

Query: 212  ENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMF 391
            ++P++  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   
Sbjct: 1609 QSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1668

Query: 392  APRYDMVATGY 424
            +P Y   +  Y
Sbjct: 1669 SPSYSPSSPRY 1679



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1638 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTS 1697

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1698 PTYSPTSPTY 1707



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1631 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTS 1690

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1691 PTYSPTSPTY 1700



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +PRYS  +P Y   +P Y   +P Y             Y+ ++
Sbjct: 1659 SPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYS 1718

Query: 395  P 397
            P
Sbjct: 1719 P 1719



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1624 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTS 1683

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1684 PTYSPTSPTY 1693



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAP---GYGIETPRYGVEAPGYXXXXXXXXXXXXC 379
            T +P +  +   +P ++  +P YS  +P   GY   +P+Y   +P Y             
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1744

Query: 380  YDMFAPRYDMVATGY 424
            Y   +P+Y   +  Y
Sbjct: 1745 YSPTSPQYSPSSPTY 1759



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPR 400
            +P+++  +P YS  +P Y   +P+Y   +P Y             Y+  +PR
Sbjct: 1721 SPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR 1772



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1652 SPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTS 1711

Query: 395  PRYD 406
            P Y+
Sbjct: 1712 PSYE 1715
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>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1641 SPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS 1700

Query: 395  PRYDMVATGY 424
            P Y   + GY
Sbjct: 1701 PSYSPTSPGY 1710



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/72 (22%), Positives = 28/72 (38%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
            T +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y  
Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607

Query: 389  FAPRYDMVATGY 424
             +P Y   +  Y
Sbjct: 1608 TSPSYSPTSPSY 1619



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1693

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1694 PNYSPTSPSY 1703



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1606 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1665

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1666 PSYSPTSPSY 1675



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1686

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1687 PSYSPTSPNY 1696



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1620 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTS 1679

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1680 PSYSPTSPSY 1689



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1613 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTS 1672

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1673 PSYSPTSPSY 1682



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1599 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1658

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1659 PAYSPTSPSY 1668



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1592 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1651

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1652 PSYSPTSPAY 1661



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1645 PSYSPTSPSY 1654



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1578 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1637

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1638 PSYSPTSPSY 1647



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1631 PSYSPTSPSY 1640



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1564 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1623

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1624 PSYSPTSPSY 1633



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1557 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1616

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1617 PSYSPTSPSY 1626



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1543 SPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1602

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1603 PSYSPTSPSY 1612



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1648 SPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1707

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1708 PGYSPGSPAY 1717



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/71 (22%), Positives = 25/71 (35%)
 Frame = +2

Query: 212  ENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMF 391
            E P +      +P  +  +P YS  +P Y   +P Y   +P Y             Y   
Sbjct: 1528 EAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1587

Query: 392  APRYDMVATGY 424
            +P Y   +  Y
Sbjct: 1588 SPSYSPTSPSY 1598
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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
            T NP TS   F +P+++  +P YS  +P Y   +P+Y   +P Y             Y  
Sbjct: 1764 TYNP-TSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1822

Query: 389  FAPRYDMVATGY 424
             +P Y   +  Y
Sbjct: 1823 TSPTYSPSSPTY 1834



 Score = 35.0 bits (79), Expect = 0.075
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1613 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSS 1672

Query: 395  PRYDMVATGY 424
            PRY   +  Y
Sbjct: 1673 PRYSPTSPTY 1682



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +PRY   +P Y             Y   +
Sbjct: 1641 SPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTS 1700

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1701 PTYSPTSPSY 1710



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/71 (21%), Positives = 29/71 (40%)
 Frame = +2

Query: 212  ENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMF 391
            ++P++  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   
Sbjct: 1605 QSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPS 1664

Query: 392  APRYDMVATGY 424
            +P Y   +  Y
Sbjct: 1665 SPSYSPSSPRY 1675



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTS 1686

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1687 PTYSPTSPTY 1696



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1620 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTS 1679

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1680 PTYSPTSPTY 1689



 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTS 1693

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1694 PTYSPTSPTY 1703



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPR 400
            +P+++  +P YS  +P Y   +P+Y   +P Y             Y+  +PR
Sbjct: 1720 SPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR 1771



 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAP------GYGIETPRYGVEAPGYXXXXXXXXXX 370
            T +P +  +   +P ++  +P YS  +P      GY   +P+Y   +P Y          
Sbjct: 1681 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPT 1740

Query: 371  XXCYDMFAPRYDMVATGY 424
               Y   +P+Y   +  Y
Sbjct: 1741 SPQYSPTSPQYSPSSPTY 1758



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
 Frame = +2

Query: 209  TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRY------GVEAPGYXXXXXXXXXX 370
            T +P +  +   +P+++  +P+YS  +P Y   +P Y      G  +P Y          
Sbjct: 1729 TYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPT 1788

Query: 371  XXCYDMFAPRYDMVATGY 424
               Y   +P+Y   +  Y
Sbjct: 1789 SPSYTPSSPQYSPTSPTY 1806



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1648 SPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTS 1707

Query: 395  PRYD 406
            P Y+
Sbjct: 1708 PSYE 1711



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVE--APGYXXXXXXXXXXXXCYDMFAPRYDMVAT 418
            +P+ +M +P YS  +P Y   +P  G    +P Y             Y   +P Y   + 
Sbjct: 1579 SPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1638

Query: 419  GY 424
             Y
Sbjct: 1639 SY 1640
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>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            N ++  +   +P+++  +P+YS  +P Y   +P+Y   +P Y             Y   +
Sbjct: 2284 NVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTS 2343

Query: 395  PRY 403
            P+Y
Sbjct: 2344 PKY 2346



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +2

Query: 221  LTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPR 400
            + S ++ ++P +++ +P+YS  +P Y   +P+Y   +P Y             Y   +P+
Sbjct: 2279 VNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2338

Query: 401  YDMVATGY 424
            Y   +  Y
Sbjct: 2339 YSPTSPKY 2346



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAP 334
            +P +  +   +P+++  +P+YS  +P Y   +P+Y   +P
Sbjct: 2312 SPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSP 2351
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>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (Fragment)
          Length = 902

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 16/72 (22%), Positives = 28/72 (38%)
 Frame = +2

Query: 209 TENPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDM 388
           T +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y  
Sbjct: 727 TYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSP 786

Query: 389 FAPRYDMVATGY 424
            +P Y   +  Y
Sbjct: 787 TSPSYSPTSPSY 798



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 792  SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 851

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 852  PSYSPTSPSY 861



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 785 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 844

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 845 PSYSPTSPSY 854



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 778 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 837

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 838 PSYSPTSPSY 847



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 771 SPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 830

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 831 PSYSPTSPSY 840



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 813  SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSS 872

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 873  PSYSPSSPSY 882



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 806  SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 865

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 866  PSYSPSSPSY 875



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 799  SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 858

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 859  PSYSPSSPSY 868



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 764 SPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 823

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 824 PSYSPTSPSY 833



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 757 SPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 816

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 817 PSYSPTSPSY 826



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 743 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTS 802

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 803 PSYSPTSPSY 812



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 750 SPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 809

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 810 PSYSPTSPSY 819



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215 NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
           +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 736 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTS 795

Query: 395 PRYDMVATGY 424
           P Y   +  Y
Sbjct: 796 PSYSPTSPSY 805



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 218 PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
           P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +P
Sbjct: 723 PQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSP 782

Query: 398 RYDMVATGY 424
            Y   +  Y
Sbjct: 783 SYSPTSPSY 791



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 13/63 (20%), Positives = 25/63 (39%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 827  SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSS 886

Query: 395  PRY 403
            P +
Sbjct: 887  PTF 889
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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1600 SPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1659

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1660 PSYSPTSPSY 1669



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1586 SPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1646 PSYSPTSPSY 1655



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1579 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1639 PSYSPTSPSY 1648



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1593 SPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1653 PSYSPTSPSY 1662



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1736

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1737 PSYSPTSPSY 1746



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1670 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1729

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1730 PSYSPTSPSY 1739



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1663 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1723 PSYSPTSPSY 1732



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1656 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1716 PSYSPTSPSY 1725



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1709 PSYSPTSPSY 1718



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1642 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1701

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1702 PSYSPTSPSY 1711



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1635 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1695 PSYSPTSPSY 1704



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1688 PSYSPTSPSY 1697



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1681 PSYSPTSPSY 1690



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1673

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1674 PSYSPTSPSY 1683



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 218  PLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAP 397
            P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +P
Sbjct: 1573 PSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP 1632

Query: 398  RYDMVATGY 424
             Y   +  Y
Sbjct: 1633 SYSPTSPSY 1641



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 266  APRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATGY 424
            +P  S ++PGYG+ +P Y   +PGY             Y   +P Y   +  Y
Sbjct: 1541 SPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPS-YSPTSPSYSPTSPSY 1592



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/60 (23%), Positives = 22/60 (36%)
 Frame = +2

Query: 245  APRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVATGY 424
            +P +   +P YS  +P Y   +P Y   +P Y             Y   +P Y   +  Y
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627



 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/61 (21%), Positives = 24/61 (39%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 395  P 397
            P
Sbjct: 1751 P 1751



 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/62 (20%), Positives = 24/62 (38%)
 Frame = +2

Query: 239  FVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVAT 418
            + +P  + ++P Y + +P Y   +P Y   +P Y             Y   +P Y   + 
Sbjct: 1539 YTSPFSSAMSPGYGLTSPSYSPSSPGYST-SPAYMPSSPSYSPTSPSYSPTSPSYSPTSP 1597

Query: 419  GY 424
             Y
Sbjct: 1598 SY 1599
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>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1546 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1605

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1606 PSYSPTSPSY 1615



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1644 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1704 PSYSPTSPSY 1713



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1637 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1696

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1697 PSYSPTSPSY 1706



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1630 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1689

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1690 PSYSPTSPSY 1699



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1623 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1682

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1683 PSYSPTSPSY 1692



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1616 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1675

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1676 PSYSPTSPSY 1685



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1609 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1668

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1669 PSYSPTSPSY 1678



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1602 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1661

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1662 PSYSPTSPSY 1671



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1595 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1654

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1655 PSYSPTSPSY 1664



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1588 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1647

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1648 PSYSPTSPSY 1657



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1581 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1640

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1641 PSYSPTSPSY 1650



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1574 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1633

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1634 PSYSPTSPSY 1643



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1567 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1626

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1627 PSYSPTSPSY 1636



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1560 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1619

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1620 PSYSPTSPSY 1629



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1553 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1612

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1613 PSYSPTSPSY 1622



 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1658 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1717

Query: 395  PRYDMVATGY 424
            P+Y   +  Y
Sbjct: 1718 PQYSPRSPSY 1727



 Score = 32.7 bits (73), Expect = 0.37
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1651 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1710

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1711 PSYSPTSPQY 1720



 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/63 (23%), Positives = 23/63 (36%)
 Frame = +2

Query: 236  DFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPRYDMVA 415
            D  +P  +  +P YS  +P Y   +P Y   +P Y             Y   +P Y   +
Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1598

Query: 416  TGY 424
              Y
Sbjct: 1599 PSY 1601
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>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1502 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1561

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1562 PSYSPTSPSY 1571



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1495 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1554

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1555 PSYSPTSPSY 1564



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1488 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1547

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1548 PSYSPTSPSY 1557



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1481 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1540

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1541 PSYSPTSPSY 1550



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1474 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1533

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1534 PSYSPTSPSY 1543



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1467 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1526

Query: 395  PRYDMVATGY 424
            P Y   +  Y
Sbjct: 1527 PSYSPTSPSY 1536



 Score = 32.3 bits (72), Expect = 0.49
 Identities = 14/70 (20%), Positives = 28/70 (40%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +  +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1509 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1568

Query: 395  PRYDMVATGY 424
            P Y +  + +
Sbjct: 1569 PSYSVSMSSF 1578
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>YDB4_SCHPO (Q10357) Hypothetical protein C22E12.04 in chromosome I|
          Length = 297

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 241 CCSQTQHDCSQIQYCCSRIRY*DSQIRCGSSRIHYCQSQKQHCCCLLR-YVCSQIRHGC 414
           CCS+     S+   CCS+    + +  C S +   C  +K+ CC   +   CSQ +  C
Sbjct: 225 CCSKKDSSPSEKPSCCSQ----EKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC 279
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>IBB1_SOYBN (P01055) Bowman-Birk type proteinase inhibitor precursor (BBI)|
          Length = 110

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
 Frame = +1

Query: 232 SRLCCSQTQHDCSQIQYCCSRIRY*DSQIRCGSSRIHYCQSQKQHCCCLLRY----VCSQ 399
           S+ CC Q           C+  +    Q RC   R++ C S  + C C L Y     C  
Sbjct: 44  SKPCCDQ-----------CACTKSNPPQCRCSDMRLNSCHSACKSCICALSYPAQCFCVD 92

Query: 400 IRHGCY 417
           I   CY
Sbjct: 93  ITDFCY 98
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>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 215  NPLTSCHDFVAPRHNMIAPRYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFA 394
            +P +S +   +P ++  +P YS  +P Y   +P Y   +P Y             Y   +
Sbjct: 1672 SPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTS 1731

Query: 395  PRY 403
            P Y
Sbjct: 1732 PNY 1734



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
 Frame = +2

Query: 227  SCHDFVAPRHNMIAP--RYSIVAPGYGIETPRYGVEAPGYXXXXXXXXXXXXCYDMFAPR 400
            S   F     N+ +P   YS  +  Y   +P Y   +P Y            CY   +P 
Sbjct: 1653 SSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPS 1712

Query: 401  YDMVATGY 424
            Y   +  Y
Sbjct: 1713 YSPTSPNY 1720
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>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1513

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 428 YRNR*QPCRIWEQTYRNRXXXXXXXXXXXCIRELPHRIWESQYRIREQQY 279
           YR R + C+  E  YR R            I E  +   E +Y I E +Y
Sbjct: 661 YRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEY 710
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>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1513

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 428 YRNR*QPCRIWEQTYRNRXXXXXXXXXXXCIRELPHRIWESQYRIREQQY 279
           YR R + C+  E  YR R            I E  +   E +Y I E +Y
Sbjct: 661 YRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEY 710
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>PYRF_STRA5 (Q8DZQ2) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 233

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 180 PIVLCNFMDIASFSYFK*NFQKLSYVHADININVGLHQMYDEKGILSRFIKQL 22
           PI+  +F D+AS + F  +F K   +     + +G+   Y E   + R+IK L
Sbjct: 6   PIIALDFSDLASVTTFLEHFPKEELLF----VKIGMELYYSEGPSIIRYIKSL 54
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>PYRF_STRA3 (Q8E5F0) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 233

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 180 PIVLCNFMDIASFSYFK*NFQKLSYVHADININVGLHQMYDEKGILSRFIKQL 22
           PI+  +F D+AS + F  +F K   +     + +G+   Y E   + R+IK L
Sbjct: 6   PIIALDFSDLASVTTFLEHFPKEELLF----VKIGMELYYSEGPSIIRYIKSL 54
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>SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit)
          Length = 1208

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 269 PRYSIVAPGYGIETPRYGVEAPGY 340
           P Y    P YG +TP YG   P Y
Sbjct: 809 PMYGSKTPMYGAQTPMYGSMTPAY 832
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>TXR1_MACRV (P61233) Raventoxin-1 (Raventoxin I)|
          Length = 43

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 322 CGSSRIHYCQSQKQHCCC 375
           CG++R  +C++ K HCCC
Sbjct: 1   CGTNRA-WCRNAKDHCCC 17


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,673,074
Number of Sequences: 219361
Number of extensions: 1156128
Number of successful extensions: 3472
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3343
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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