Clone Information

BLAST Search Result

Clone Name	rbart43c01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ277399.1\|LPE277399 Lolium perenne partial mRNA for ice rec...	184	2e-43
2	gb\|AY968588.1\| Triticum aestivum ice recrystallization inhibitio...	172	6e-40
3	gb\|AY968589.1\| Triticum aestivum ice recrystallization inhibitio...	60	6e-06
4	ref\|NM_186147.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.093
5	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.093
6	dbj\|AP004342.5\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.093
7	dbj\|AK121984.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.093
8	dbj\|AK103166.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.093
9	dbj\|AK064359.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.093
10	gb\|AC163494.3\| Mus musculus chromosome 7, clone RP23-221O21, com...	42	1.5
11	gb\|AC101818.9\| Mus musculus chromosome 7, clone RP24-363I8, comp...	42	1.5
12	emb\|AL355796.11\| Human DNA sequence from clone RP11-46B11 on chr...	42	1.5
13	gb\|AC114791.3\| Homo sapiens BAC clone RP11-658B24 from 4, comple...	42	1.5
14	dbj\|AP005307.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
15	dbj\|AP003756.5\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
16	dbj\|AP001984.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	42	1.5
17	gb\|AC005772.1\|AC005772 Homo sapiens chromosome 17, clone hRPK.92...	42	1.5
18	gb\|AC174772.1\| Gasterosteus aculeatus clone VMRC28-84K14, comple...	42	1.5
19	gb\|AC118696.14\| Mus musculus chromosome 3, clone RP24-62O16, com...	40	5.8
20	gb\|AC147035.3\| Pan troglodytes BAC clone RP43-104N19 from 7, com...	40	5.8
21	gb\|AC117547.19\| Mus musculus chromosome 1, clone RP23-221M20, co...	40	5.8
22	gb\|AC006042.2\| Homo sapiens BAC clone RP11-505D17 from 7, comple...	40	5.8
23	gb\|AC099930.11\| Mus musculus chromosome 7, clone RP23-17C12, com...	40	5.8
24	emb\|AL357520.12\| Human DNA sequence from clone RP11-288D15 on ch...	40	5.8
25	emb\|AL355596.21\| Human DNA sequence from clone RP11-63E9 on chro...	40	5.8
26	emb\|AL356356.17\| Human DNA sequence from clone RP11-54A4 on chro...	40	5.8
27	emb\|AL356632.12\| Human DNA sequence from clone RP11-7D5 on chrom...	40	5.8
28	emb\|AL049862.1\|ATF18B3 Arabidopsis thaliana DNA chromosome 3, BA...	40	5.8
29	emb\|CR927553.8\| Zebrafish DNA sequence from clone DKEY-206P8 in ...	40	5.8
30	emb\|BX908771.7\| Zebrafish DNA sequence from clone CH211-214K13 i...	40	5.8
31	gb\|AC118343.1\| Homo sapiens chromosome 19 clone LLNLR-234A10, co...	40	5.8
32	gb\|AC104260.5\| Homo sapiens chromosome 15, clone CTD-2536I1, com...	40	5.8
33	gb\|AC092313.2\| Homo sapiens chromosome 19 clone LLNLR-293G8, com...	40	5.8
34	gb\|AC093234.2\| Homo sapiens chromosome 19 clone LLNLR-266A8, com...	40	5.8
35	gb\|AC069200.6\| Homo sapiens BAC clone RP11-177J6 from 4, complet...	40	5.8
36	gb\|AC155641.8\| Mus musculus 10 BAC RP24-121N1 (Roswell Park Canc...	40	5.8
37	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
38	gb\|AC078789.16\| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Ca...	40	5.8
39	dbj\|AP004707.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
40	emb\|AL773596.12\| Zebrafish DNA sequence from clone CH211-208G24 ...	40	5.8
41	gb\|AC092939.8\| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Canc...	40	5.8
42	gb\|AC008734.7\| Homo sapiens chromosome 19 clone CTD-2529P6, comp...	40	5.8
43	gb\|AC164373.4\| Mus musculus chromosome 1, clone RP23-36O22, comp...	40	5.8
44	gb\|AE005174.2\| Escherichia coli O157:H7 EDL933, complete genome	40	5.8
45	dbj\|BA000007.2\| Escherichia coli O157:H7 DNA, complete genome	40	5.8

>emb|AJ277399.1|LPE277399 Lolium perenne partial mRNA for ice recrystallisation inhibition
           protein
          Length = 357

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Minus

                                                                       
Query: 229 ctgtcacgactttgttgctcccagacacaacatgattgctcccagatacagtattgttgc 288
           ||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||||||||
Sbjct: 349 ctgtcacgactttgttgcttccagatacaacgtggttgctcccagatacggtattgttgc 290

                                                                       
Query: 289 tcccggatacggtattgagactcccagatacggtgtggaagctcccggatacattattgt 348
           ||||||| || |||||| | | ||| |||||||| || |||||||||||||||||||| |
Sbjct: 289 tcccggagacagtattgtgccccccggatacggtatgaaagctcccggatacattattat 230

                                                                       
Query: 349 caatcccagaaacaacattgttgttgtctgttacgatatgtttgctcccagatacgacat 408
           |  |||| || ||   ||||||||||||||| |||||||| ||  |||| ||||||||||
Sbjct: 229 cgttcccggatacgttattgttgttgtctgtaacgatatggtttgtccctgatacgacat 170

                                
Query: 409 ggttgctaccggttacggtat 429
           ||||||| |||||||||||||
Sbjct: 169 ggttgctgccggttacggtat 149

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>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1
           precursor, mRNA, complete cds
          Length = 1079

 Score =  172 bits (87), Expect = 6e-40
 Identities = 169/196 (86%), Gaps = 4/196 (2%)
 Strand = Plus / Minus

                                                                       
Query: 234 acgactttgttgctcccagacacaacatgattgctcccagatacagtattgttgctcccg 293
           ||||| |||||||||||||| || ||||| ||||||||||||||||| |||||| |||| 
Sbjct: 929 acgaccttgttgctcccagatacgacatggttgctcccagatacagtgttgttggtccca 870

                                                                       
Query: 294 gatacggtattgagactcccagatacggtgtggaagctcccggatacattattgtcaatc 353
           ||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||    ||
Sbjct: 869 gatacagtattgtggctcccggatacggtatggaagctcccggatacattattg----tc 814

                                                                       
Query: 354 ccagaaacaacattgttgttgtctgttacgatatgtttgctcccagatacgacatggttg 413
           || || ||  ||||||| ||||| || ||||||||||||  ||||||||| |||||||||
Sbjct: 813 ccggatacggcattgttattgtcagtcacgatatgtttgtccccagatacaacatggttg 754

                           
Query: 414 ctaccggttacggtat 429
           ||||| ||||||||||
Sbjct: 753 ctaccagttacggtat 738



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 151  tatatccatgaagttacataacacgattggcccca-ccaagtgattgtgagcta 203
            |||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||
Sbjct: 1057 tatatccatgaagttacataacactattgaccccacccaagtgattgtgggcta 1004

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>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2
            precursor, mRNA, complete cds
          Length = 1596

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 58/66 (87%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 135  agtaggaaaaggatgctatatccatgaagttacata-acacgattggccccaccaagtga 193
            ||||| || ||||| ||||| ||||||||||||| | || ||||||||||||||||| ||
Sbjct: 1385 agtagtaataggattctatacccatgaagttacaaatacgcgattggccccaccaaggga 1326

                  
Query: 194  ttgtga 199
            ||||||
Sbjct: 1325 ttgtga 1320



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 222  taacctcctgtcacgactttgttgctcccagacacaacatgattgctcccagatacagta 281
            |||||||| || |||||||||||  ||||||| || ||||| || ||||||||||||  |
Sbjct: 1250 taacctccagttacgactttgttattcccagatacgacatggtttctcccagatacaaca 1191

                       
Query: 282  ttgttgctccc 292
            || ||||||||
Sbjct: 1190 ttattgctccc 1180



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 246  ctcccagacacaacatgattgctcccagatacagtattgttgctcccggatacg 299
            |||||||| ||||||| ||||||||||| |||   |||||| ||||||||||||
Sbjct: 1205 ctcccagatacaacattattgctcccagttacgacattgttcctcccggatacg 1152

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>ref|NM_186147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3033

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 179  ggccccaccaagtgattgtgagc 201
            |||||||||||||||||||||||
Sbjct: 1838 ggccccaccaagtgattgtgagc 1816

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 179    ggccccaccaagtgattgtgagc 201
              |||||||||||||||||||||||
Sbjct: 425934 ggccccaccaagtgattgtgagc 425912



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 84      tgatatttatgtcagcatgta 104
               |||||||||||||||||||||
Sbjct: 9132241 tgatatttatgtcagcatgta 9132261

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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 179   ggccccaccaagtgattgtgagc 201
             |||||||||||||||||||||||
Sbjct: 28098 ggccccaccaagtgattgtgagc 28076

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>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full
            insert sequence
          Length = 3392

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 179  ggccccaccaagtgattgtgagc 201
            |||||||||||||||||||||||
Sbjct: 1964 ggccccaccaagtgattgtgagc 1942

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>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full
            insert sequence
          Length = 2958

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 179  ggccccaccaagtgattgtgagc 201
            |||||||||||||||||||||||
Sbjct: 1502 ggccccaccaagtgattgtgagc 1480

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>dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B08, full
           insert sequence
          Length = 2238

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 179 ggccccaccaagtgattgtgagc 201
           |||||||||||||||||||||||
Sbjct: 649 ggccccaccaagtgattgtgagc 627

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>gb|AC163494.3| Mus musculus chromosome 7, clone RP23-221O21, complete sequence
          Length = 193210

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 122   aaattttatttaaagtaggaa 142
             |||||||||||||||||||||
Sbjct: 49411 aaattttatttaaagtaggaa 49431

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>gb|AC101818.9| Mus musculus chromosome 7, clone RP24-363I8, complete sequence
          Length = 137430

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   aaattttatttaaagtaggaa 142
             |||||||||||||||||||||
Sbjct: 95265 aaattttatttaaagtaggaa 95245

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>emb|AL355796.11| Human DNA sequence from clone RP11-46B11 on chromosome 6 Contains the
             TRIP7 gene for thyroid hormone receptor interactor 7, a
             ribosomal protein S18 (RPS18) pseudogene and part of a
             novel gene, complete sequence
          Length = 152086

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   tttctggaaattttatttaaa 135
             |||||||||||||||||||||
Sbjct: 98478 tttctggaaattttatttaaa 98458

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>gb|AC114791.3| Homo sapiens BAC clone RP11-658B24 from 4, complete sequence
          Length = 113268

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   tggaaattttatttaaagtag 139
             |||||||||||||||||||||
Sbjct: 10856 tggaaattttatttaaagtag 10876

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>dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0046D03
          Length = 150554

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    tgatatttatgtcagcatgta 104
             |||||||||||||||||||||
Sbjct: 15114 tgatatttatgtcagcatgta 15134

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>dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1370_E02
          Length = 128326

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     tgatatttatgtcagcatgta 104
              |||||||||||||||||||||
Sbjct: 122648 tgatatttatgtcagcatgta 122668

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>dbj|AP001984.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-597K9, complete
             sequence
          Length = 62000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 112   taatttctggaaattttattt 132
             |||||||||||||||||||||
Sbjct: 41726 taatttctggaaattttattt 41706

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>gb|AC005772.1|AC005772 Homo sapiens chromosome 17, clone hRPK.924_A_14, complete sequence
          Length = 175339

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 111   ataatttctggaaattttatttaaa 135
             |||| ||||||||||||||||||||
Sbjct: 31442 ataagttctggaaattttatttaaa 31418

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>gb|AC174772.1| Gasterosteus aculeatus clone VMRC28-84K14, complete sequence
          Length = 121286

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   atccatgaagttacataacac 174
             |||||||||||||||||||||
Sbjct: 90929 atccatgaagttacataacac 90949

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>gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, complete sequence
          Length = 190616

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    atttaaagtaggaaaaggat 148
              ||||||||||||||||||||
Sbjct: 139650 atttaaagtaggaaaaggat 139669

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>gb|AC147035.3| Pan troglodytes BAC clone RP43-104N19 from 7, complete sequence
          Length = 177446

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 347   gtcaatcccagaaacaacattgttgttg 374
             |||||| |||||||| ||||||||||||
Sbjct: 31046 gtcaattccagaaactacattgttgttg 31073

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>gb|AC117547.19| Mus musculus chromosome 1, clone RP23-221M20, complete sequence
          Length = 195598

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   ctggaaattttatttaaagt 137
             ||||||||||||||||||||
Sbjct: 57149 ctggaaattttatttaaagt 57130

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>gb|AC006042.2| Homo sapiens BAC clone RP11-505D17 from 7, complete sequence
          Length = 178361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 347  gtcaatcccagaaacaacattgttgttg 374
            |||||| |||||||| ||||||||||||
Sbjct: 1706 gtcaattccagaaactacattgttgttg 1733

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>gb|AC099930.11| Mus musculus chromosome 7, clone RP23-17C12, complete sequence
          Length = 224617

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    taggaaaaggatgctatatc 156
              ||||||||||||||||||||
Sbjct: 172959 taggaaaaggatgctatatc 172940

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>emb|AL357520.12| Human DNA sequence from clone RP11-288D15 on chromosome 10 Contains a
             pseudogene similar to part of glycogen synthase kinase 3
             and a ubiquitin-conjugating enzyme pseudogene, complete
             sequence
          Length = 178942

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   attattgtcaatcccagaaa 360
             ||||||||||||||||||||
Sbjct: 90072 attattgtcaatcccagaaa 90053

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>emb|AL355596.21| Human DNA sequence from clone RP11-63E9 on chromosome 6, complete
             sequence
          Length = 180778

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   gataatttctggaaatttta 129
             ||||||||||||||||||||
Sbjct: 34578 gataatttctggaaatttta 34597

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>emb|AL356356.17| Human DNA sequence from clone RP11-54A4 on chromosome 1 Contains the 3'
             end of the gene for a novel protein (KIAA0460), the gene
             for threonyl-tRNA synthetase (FLJ12528), the ECM1 gene for
             extracellular matrix protein 1, the TSRC1 gene for
             thrombospondin repeat containing 1, two novel genes, the
             MCL1 gene for myeloid cell leukemia sequence 1
             (BCL2-related), the ENSA gene for endosulfine alpha, the
             3' end of the gene for GPP34-related protein (GPP34R) and
             two CpG islands, complete sequence
          Length = 176550

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aatttctggaaattttattt 132
             ||||||||||||||||||||
Sbjct: 71493 aatttctggaaattttattt 71512

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>emb|AL356632.12| Human DNA sequence from clone RP11-7D5 on chromosome 10 Contains a
             ribosomal protein S3A (RPS3A) pseudogene, the PYCS gene
             for pyrroline-5-carboxylate synthetase (glutamate
             gamma-semialdehyde synthetase) (GSAS, P5CS), the gene for
             a novel protein (DKFZP564D116, FLJ40976), the 5' end of
             the ENTPD1 gene for ectonucleoside triphosphate
             diphosphohydrolase 1 and two CpG islands, complete
             sequence
          Length = 163166

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ttctggaaattttatttaaa 135
             ||||||||||||||||||||
Sbjct: 65837 ttctggaaattttatttaaa 65818

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>emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3
          Length = 89469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    gacattgatatttatgtcag 98
             ||||||||||||||||||||
Sbjct: 47861 gacattgatatttatgtcag 47880

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>emb|CR927553.8| Zebrafish DNA sequence from clone DKEY-206P8 in linkage group 17,
            complete sequence
          Length = 162064

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  tcccagacacaacatgattg 266
            ||||||||||||||||||||
Sbjct: 6700 tcccagacacaacatgattg 6719

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>emb|BX908771.7| Zebrafish DNA sequence from clone CH211-214K13 in linkage group 3,
             complete sequence
          Length = 114109

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   ctggaaattttatttaaagt 137
             ||||||||||||||||||||
Sbjct: 50902 ctggaaattttatttaaagt 50921

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>gb|AC118343.1| Homo sapiens chromosome 19 clone LLNLR-234A10, complete sequence
          Length = 36965

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ttctggaaattttatttaaa 135
             ||||||||||||||||||||
Sbjct: 25568 ttctggaaattttatttaaa 25587

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>gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, complete sequence
          Length = 191528

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   tcccagacacaacatgattg 266
             ||||||||||||||||||||
Sbjct: 54474 tcccagacacaacatgattg 54455

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>gb|AC092313.2| Homo sapiens chromosome 19 clone LLNLR-293G8, complete sequence
          Length = 38582

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ttctggaaattttatttaaa 135
             ||||||||||||||||||||
Sbjct: 24728 ttctggaaattttatttaaa 24709

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>gb|AC093234.2| Homo sapiens chromosome 19 clone LLNLR-266A8, complete sequence
          Length = 36965

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ttctggaaattttatttaaa 135
             ||||||||||||||||||||
Sbjct: 25568 ttctggaaattttatttaaa 25587

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>gb|AC069200.6| Homo sapiens BAC clone RP11-177J6 from 4, complete sequence
          Length = 148930

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    ggatgctatatccatgaagt 164
              ||||||||||||||||||||
Sbjct: 119840 ggatgctatatccatgaagt 119821

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>gb|AC155641.8| Mus musculus 10 BAC RP24-121N1 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 195480

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    gataatttctggaaattttattta 133
              ||||| ||||||||||||||||||
Sbjct: 130634 gataaattctggaaattttattta 130611

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 122      aaattttatttaaagtaggaaaag 145
                |||||||||||||| |||||||||
Sbjct: 22596619 aaattttatttaaaataggaaaag 22596642

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>gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 197554

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   attttatttaaagtaggaaa 143
             ||||||||||||||||||||
Sbjct: 56420 attttatttaaagtaggaaa 56439

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>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0690E03
          Length = 139924

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   aaattttatttaaagtaggaaaag 145
             |||||||||||||| |||||||||
Sbjct: 70120 aaattttatttaaaataggaaaag 70143

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>emb|AL773596.12| Zebrafish DNA sequence from clone CH211-208G24 in linkage group 17,
             complete sequence
          Length = 206778

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cagatacagtattgttgctc 290
             ||||||||||||||||||||
Sbjct: 59566 cagatacagtattgttgctc 59547

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>gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167152

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   atttctggaaattttattta 133
             ||||||||||||||||||||
Sbjct: 36334 atttctggaaattttattta 36353

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>gb|AC008734.7| Homo sapiens chromosome 19 clone CTD-2529P6, complete sequence
          Length = 183137

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ttctggaaattttatttaaa 135
             ||||||||||||||||||||
Sbjct: 48545 ttctggaaattttatttaaa 48526

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>gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, complete sequence
          Length = 171278

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ctggaaattttatttaaagt 137
              ||||||||||||||||||||
Sbjct: 168814 ctggaaattttatttaaagt 168795

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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      cgacattgatatttatgtca 97
               ||||||||||||||||||||
Sbjct: 2936698 cgacattgatatttatgtca 2936679

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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      cgacattgatatttatgtca 97
               ||||||||||||||||||||
Sbjct: 2866467 cgacattgatatttatgtca 2866448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,839,125
Number of Sequences: 3902068
Number of extensions: 3839125
Number of successful extensions: 68994
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68800
Number of HSP's gapped (non-prelim): 183
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result