ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in... 33 0.52
2RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin r... 31 1.5
3REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing pro... 31 2.0
4ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resista... 29 7.5
5PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM ... 29 7.5
6Y416_THEMA (Q9WYP7) Hypothetical protein TM0416 29 7.5
7NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter ... 29 7.5
8SUL2_YEAST (Q12325) Sulfate permease 2 (High-affinity sulfate tr... 28 9.7
9LIRA1_HUMAN (O75019) Leukocyte immunoglobulin-like receptor subf... 28 9.7
10SL9A6_HUMAN (Q92581) Sodium/hydrogen exchanger 6 (Na(+)/H(+) exc... 28 9.7
11KRA99_HUMAN (Q9BYP9) Keratin-associated protein 9-9 (Keratin-ass... 28 9.7

>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I|
          Length = 536

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 34/135 (25%), Positives = 58/135 (42%)
 Frame = +2

Query: 11  SVSLSLIPMSITEITSSSRKS*NTSFCP*GRYSRLHRYQIFIHASQNMNLSREDISRGHP 190
           S S SL   S   +TSSS  S  +S      ++        + +S +  +S   +S  H 
Sbjct: 93  SSSASLTSSSSATLTSSSSASPTSSS---SSHALSSSSSSLVASSSSSGMSSSSLS--HS 147

Query: 191 SLLPALSSGLHASLPASSSRNRRSDATFHSNRCPCCIPSTITTSNWSFSHRPLATSNRWG 370
           S +P+ SS  H+S   +S  +  +     + R    I + ++TS  S    P  T+N   
Sbjct: 148 SSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNWNS 207

Query: 371 SRCISGPLVTTPLAS 415
           S   +    +TP++S
Sbjct: 208 SSSFTSSTSSTPISS 222



to top

>RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin receptor|
           homolog)
          Length = 298

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/97 (26%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
 Frame = -2

Query: 478 EQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAPAPPPVTGGEWPMAEXXXXXXXXXXX 299
           E EDEA    EY A+       G  GGDQWT        +    WP              
Sbjct: 217 EDEDEAGPQAEYGALP--APEYGMVGGDQWTT-----AQIPDAAWP--------GEGQAP 261

Query: 298 XXXXXXXXXXXXXXXXXXATGWEAGVQPA---AQGWE 197
                               GWEA   P+   A GWE
Sbjct: 262 ISAAPAAASWSDSAAAPADGGWEAAAPPSGAPAAGWE 298



to top

>REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 744

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +2

Query: 125 QIFIHASQNMNLSREDISRGHPSLLPALSSGLHASLPASSSRNRRSDA 268
           Q  + A+ N+N  ++D +  HP +LPA      AS PASS R  ++D+
Sbjct: 580 QFEVFAASNVNDEQDDEAEKHPEVLPAEK----ASDPASSLRVAKTDS 623



to top

>ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resistance protein 2)|
          Length = 858

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +2

Query: 107 SRLHRYQIFIHASQNMNLSREDISRGHPSLLPALSSGLHASLPASSSRNRRSDATFHSNR 286
           S  H+ QI + +          + RGH + LPA +S    +L ASSS       TF S R
Sbjct: 127 SETHQKQIHVESIAPSLPKNAALERGHDTALPAGTSSNRCNLEASSSAR-----TFTSAR 181

Query: 287 CPCCIPSTITTS 322
               + +   TS
Sbjct: 182 KASLVSAIFETS 193



to top

>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
 Frame = +2

Query: 125 QIFIHASQNMNLSREDISRGHPSLLPALSSGLHASL---PASSSR--NRRSDATFHSNRC 289
           QIF+   +N     +    GH +  P ++SG+ AS    P S  R  N +S     + R 
Sbjct: 307 QIFLDGQENKRRRHDSSGSGHSAFEPLVASGVPASFVPKPGSLKRGLNSQSSDDHLNKRS 366

Query: 290 PCCIPSTIT---TSNWSFSHRPLATSNRWGSRCIS 385
                S++T   TS    S R   TS+   +R IS
Sbjct: 367 RSSSMSSLTGAYTSGIPSSSRNAITSSYSSTRGIS 401



to top

>Y416_THEMA (Q9WYP7) Hypothetical protein TM0416|
          Length = 270

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +2

Query: 167 EDISRGHPSLLPALSSGLHASLPASSSRNRRSDATFHSNRCPCCIPSTITTSNWSFSHRP 346
           E ++R     +  +   L      +S+R      TFH N     IP ++  +     H  
Sbjct: 149 EPLNRYETDFINTIDDALRILRKINSNRVGILADTFHMNIEEVNIPESLKRAGEKLYHFH 208

Query: 347 LATSNRWGSRC 379
           +A SNRW   C
Sbjct: 209 VADSNRWAPGC 219



to top

>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)|
           (Solute carrier family 4 anion exchanger member 1
           adapter protein) (Lung cancer oncogene 3 protein)
          Length = 796

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 101 RYSRLHRYQIFIHASQNMNLSREDISRGHPSLLPALSSGLHASLPASSSRN 253
           R S+LHR ++    SQ+  L+ +D+S         +S    +  PASSS N
Sbjct: 46  RISKLHRLRMADILSQSETLASQDLSGDFKKPALPVSPAARSKAPASSSSN 96



to top

>SUL2_YEAST (Q12325) Sulfate permease 2 (High-affinity sulfate transporter 2)|
          Length = 893

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 368 GSRCISGPLVTTPLASCCGVIS 433
           G   I+GP++ T LA  CG+IS
Sbjct: 215 GDSAITGPVIATTLALLCGIIS 236



to top

>LIRA1_HUMAN (O75019) Leukocyte immunoglobulin-like receptor subfamily A member|
           1 precursor (Leucocyte immunoglobulin-like receptor 6)
           (LIR-6) (CD85i antigen)
          Length = 489

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 290 PCCIPSTITTSNWS---FSHRPLATSNRWGSRC 379
           P C+ S   T  WS   FS  P++ S RW  RC
Sbjct: 165 PQCLNSQPRTHGWSRAIFSVGPVSPSRRWSYRC 197



to top

>SL9A6_HUMAN (Q92581) Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6)|
           (NHE-6) (Solute carrier family 9 member 6)
          Length = 669

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 383 SGPLVTTPLASCCGVISDC 439
           SGP +TT L +CCG I+ C
Sbjct: 553 SGPPLTTTLPACCGPIARC 571



to top

>KRA99_HUMAN (Q9BYP9) Keratin-associated protein 9-9 (Keratin-associated protein|
           9.9) (Ultrahigh sulfur keratin-associated protein 9.9)
          Length = 154

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = +2

Query: 290 PCCIPSTITTSNWSFSHRPLATSNRWGSRCISGPLVTTPLASCCGVISDCSILWGSSS 463
           PCC PS   +S      RP    N   + C +     T L+SCCG  S C    G SS
Sbjct: 36  PCCQPSCCVSSCCQPCCRPACCQN---TCCRTTCCQPTCLSSCCGQTS-CGSSCGQSS 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,726,083
Number of Sequences: 219361
Number of extensions: 972510
Number of successful extensions: 2808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top