ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ANGLT_ROSHC (Q4R1I9) Anthocyanidin 5,3-O-glucosyltransferase (EC... 34 0.18
2JHD1_CRYNE (Q55NZ6) JmjC domain-containing histone demethylation... 32 0.89
3TORZ_ECOL6 (Q8CVZ3) Trimethylamine-N-oxide reductase 2 precursor... 30 2.6
4TORZ_ECO57 (P58362) Trimethylamine-N-oxide reductase 2 precursor... 30 2.6
5TCTP_WUCBA (Q962A2) Translationally-controlled tumor protein hom... 30 2.6
6TCTP_BRUMA (P90697) Translationally-controlled tumor protein hom... 30 3.4
7TORZ_ECOLI (P46923) Trimethylamine-N-oxide reductase 2 precursor... 28 9.9
8KCNH6_RAT (O54853) Potassium voltage-gated channel subfamily H m... 28 9.9

>ANGLT_ROSHC (Q4R1I9) Anthocyanidin 5,3-O-glucosyltransferase (EC 2.4.1.-)|
           (UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase)
          Length = 473

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 342 MMDSDGGRVIRERTQAAMRQANEAMREGGQSEATLARLVDAW 217
           +MDS+ G  IR R         +A  EGG S A+LA+L   W
Sbjct: 429 LMDSESGDEIRGRVSEFSNGGVKAKEEGGSSVASLAKLAQLW 470



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>JHD1_CRYNE (Q55NZ6) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 879

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 86  RENPSTVVVYFRSNLILPHTTMLVAHRVSPDLFFNRSREHQASSHASTSRANVASDCPPS 265
           + + ST     +SN+  P T+       SP++     RE QA S A T     ASD P  
Sbjct: 152 KRSASTSAPLLKSNIKRPRTSTKGQETASPEIDMKSEREQQAESTAGTP----ASDAPQG 207

Query: 266 R 268
           R
Sbjct: 208 R 208



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>TORZ_ECOL6 (Q8CVZ3) Trimethylamine-N-oxide reductase 2 precursor (EC 1.7.2.3)|
           (TMAO reductase 2) (Trimethylamine oxidase 2)
          Length = 809

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 324 GRVIRERTQAAMRQANEAMREGGQSEATLARLVDA 220
           G V+ E + A   QA+EA  +GG +   +AR+VDA
Sbjct: 401 GGVLPEMSAAIAGQASEAADDGGMTAIPVARIVDA 435



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>TORZ_ECO57 (P58362) Trimethylamine-N-oxide reductase 2 precursor (EC 1.7.2.3)|
           (TMAO reductase 2) (Trimethylamine oxidase 2)
          Length = 809

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 324 GRVIRERTQAAMRQANEAMREGGQSEATLARLVDA 220
           G V+ E + A   QA+EA  +GG +   +AR+VDA
Sbjct: 401 GGVLPEMSAAIAGQASEAADDGGMTAIPVARIVDA 435



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>TCTP_WUCBA (Q962A2) Translationally-controlled tumor protein homolog (TCTP)|
          Length = 181

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = -3

Query: 291 MRQANEAMREGGQSEATLA---RLVDAWLLA*CSRDRLKK 181
           M++  E M++ G+SEA ++   R + AW+++  S+DR K+
Sbjct: 96  MKKVVELMQKNGKSEAEISEFKRKIQAWVVSLLSKDRFKQ 135



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>TCTP_BRUMA (P90697) Translationally-controlled tumor protein homolog (TCTP)|
           (TPH-1)
          Length = 181

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = -3

Query: 291 MRQANEAMREGGQSEATLA---RLVDAWLLA*CSRDRLKK 181
           M++  E M++ G+SEA ++   R + AW+++  S+DR K+
Sbjct: 96  MKKVVELMQKNGKSEAEISEFKRKIPAWVVSLLSKDRFKQ 135



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>TORZ_ECOLI (P46923) Trimethylamine-N-oxide reductase 2 precursor (EC 1.7.2.3)|
           (TMAO reductase 2) (Trimethylamine oxidase 2)
          Length = 809

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 324 GRVIRERTQAAMRQANEAMREGGQSEATLARLVDA 220
           G V+ E + A    A+EA  +GG +   +AR+VDA
Sbjct: 401 GGVLPEMSAAIAGHASEAADDGGMTAIPVARIVDA 435



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>KCNH6_RAT (O54853) Potassium voltage-gated channel subfamily H member 6|
           (Voltage-gated potassium channel subunit Kv11.2)
           (Ether-a-go-go-related gene potassium channel 2)
           (Ether-a-go-go-related protein 2) (Eag-related protein
           2)
          Length = 950

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 254 CPPSRIASFACLMAACVRSRIT-LPPSESIIH 346
           CP  R AS  CL A  V+ + T  PP ++++H
Sbjct: 592 CPAFRGASKGCLRALAVKFKTTHAPPGDTLVH 623


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,601,007
Number of Sequences: 219361
Number of extensions: 818244
Number of successful extensions: 2032
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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