ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart43b07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463421.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 87.7 bits (44), Expect = 3e-14 Identities = 122/148 (82%) Strand = Plus / Minus Query: 227 accagccgcgccaatgtcgcctcagactgcccgccctcacgcattgcctcattcgcctgc 286 |||||||||||||| ||| |||| |||| ||||| || |||| ||| | |||||| || Sbjct: 1424 accagccgcgccaacgtcacctccgactcgccgccgtcgcgcagcgccgccttcgcccgc 1365 Query: 287 ctcatggccgcctgcgtccgctcacggatcaccctcccgccgtcagagtccatcatccac 346 | |||||||||| |||||||||| ||| | ||||||||||||| || ||||||| |||| Sbjct: 1364 cgcatggccgccagcgtccgctccaggagcgccctcccgccgtcggactccatcagccac 1305 Query: 347 ttcacctttgctgccacctcctcggcct 374 |||||| || ||||||||||| |||| Sbjct: 1304 cgcaccttcgccgccacctcctccgcct 1277
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 3e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 227 accagccgcgccaatgtcgcctcagactgcccgccctcacgcattgcctcattcgcctgc 286 |||||||||||||| ||| |||| |||| ||||| || |||| ||| | |||||| || Sbjct: 28841493 accagccgcgccaacgtcacctccgactcgccgccgtcgcgcagcgccgccttcgcccgc 28841552 Query: 287 ctcatggccgcctgcgtccgctcacggatcaccctcccgccgtcagagtccatcatccac 346 | |||||||||| |||||||||| ||| | ||||||||||||| || ||||||| |||| Sbjct: 28841553 cgcatggccgccagcgtccgctccaggagcgccctcccgccgtcggactccatcagccac 28841612 Query: 347 ttcacctttgctgccacctcctcggcct 374 |||||| || ||||||||||| |||| Sbjct: 28841613 cgcaccttcgccgccacctcctccgcct 28841640 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 335 tccatcatccacttcacctttgctgccacctcctcggcctccaccacctccttgtcgta 393 ||||||| |||| | ||||| || |||||||||| ||| |||||||||||| |||||| Sbjct: 30642172 tccatcacccacctgaccttcgcctccacctcctccgccaccaccacctcctcgtcgta 30642114
>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_H09 Length = 110086 Score = 87.7 bits (44), Expect = 3e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 227 accagccgcgccaatgtcgcctcagactgcccgccctcacgcattgcctcattcgcctgc 286 |||||||||||||| ||| |||| |||| ||||| || |||| ||| | |||||| || Sbjct: 59536 accagccgcgccaacgtcacctccgactcgccgccgtcgcgcagcgccgccttcgcccgc 59595 Query: 287 ctcatggccgcctgcgtccgctcacggatcaccctcccgccgtcagagtccatcatccac 346 | |||||||||| |||||||||| ||| | ||||||||||||| || ||||||| |||| Sbjct: 59596 cgcatggccgccagcgtccgctccaggagcgccctcccgccgtcggactccatcagccac 59655 Query: 347 ttcacctttgctgccacctcctcggcct 374 |||||| || ||||||||||| |||| Sbjct: 59656 cgcaccttcgccgccacctcctccgcct 59683
>dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114N14, full insert sequence Length = 1727 Score = 87.7 bits (44), Expect = 3e-14 Identities = 122/148 (82%) Strand = Plus / Minus Query: 227 accagccgcgccaatgtcgcctcagactgcccgccctcacgcattgcctcattcgcctgc 286 |||||||||||||| ||| |||| |||| ||||| || |||| ||| | |||||| || Sbjct: 1485 accagccgcgccaacgtcacctccgactcgccgccgtcgcgcagcgccgccttcgcccgc 1426 Query: 287 ctcatggccgcctgcgtccgctcacggatcaccctcccgccgtcagagtccatcatccac 346 | |||||||||| |||||||||| ||| | ||||||||||||| || ||||||| |||| Sbjct: 1425 cgcatggccgccagcgtccgctccaggagcgccctcccgccgtcggactccatcagccac 1366 Query: 347 ttcacctttgctgccacctcctcggcct 374 |||||| || ||||||||||| |||| Sbjct: 1365 cgcaccttcgccgccacctcctccgcct 1338
>ref|XM_520678.1| PREDICTED: Pan troglodytes similar to Zinc finger protein 219 (LOC465212), mRNA Length = 2606 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1603 cctcctcggcctccaccacctcct 1580
>gb|BC000694.2| Homo sapiens zinc finger protein 219, mRNA (cDNA clone MGC:1124 IMAGE:3347777), complete cds Length = 2709 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1344 cctcctcggcctccaccacctcct 1321
>gb|BC036105.1| Homo sapiens zinc finger protein 219, mRNA (cDNA clone MGC:33918 IMAGE:5274736), complete cds Length = 2750 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1425 cctcctcggcctccaccacctcct 1402
>gb|BT007678.1| Synthetic construct Homo sapiens zinc finger protein 219 mRNA, partial cds Length = 2163 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1306 cctcctcggcctccaccacctcct 1283
>gb|BT006956.1| Homo sapiens zinc finger protein 219 mRNA, complete cds Length = 2163 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1306 cctcctcggcctccaccacctcct 1283
>emb|CR610917.1| full-length cDNA clone CS0DF013YA19 of Fetal brain of Homo sapiens (human) Length = 1417 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 340 cctcctcggcctccaccacctcct 317
>dbj|AK056261.1| Homo sapiens cDNA FLJ31699 fis, clone NT2RI2006070, highly similar to Homo sapiens mRNA for zinc finger protein 219 Length = 2279 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 940 cctcctcggcctccaccacctcct 917
>gb|AY891877.1| Synthetic construct Homo sapiens clone FLH012689.01L zinc finger protein 219 (ZNF219) mRNA, partial cds Length = 2163 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1306 cctcctcggcctccaccacctcct 1283
>gb|AY889389.1| Synthetic construct Homo sapiens clone FLH012694.01X zinc finger protein 219 (ZNF219) mRNA, complete cds Length = 2163 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1306 cctcctcggcctccaccacctcct 1283
>gb|AY889388.1| Synthetic construct Homo sapiens clone FLH012693.01X zinc finger protein 219 (ZNF219) mRNA, complete cds Length = 2163 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 1306 cctcctcggcctccaccacctcct 1283
>emb|AL161668.6|CNS01RHB Human chromosome 14 DNA sequence BAC R-998D10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203363 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 145321 cctcctcggcctccaccacctcct 145344
>emb|AL157687.6|CNS01RFZ Human chromosome 14 DNA sequence BAC C-2552B11 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197346 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 363 cctcctcggcctccaccacctcct 386 |||||||||||||||||||||||| Sbjct: 82136 cctcctcggcctccaccacctcct 82159
>ref|NM_191560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1440 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 335 tccatcatccacttcacctttgctgccacctcctcggcctccaccacctccttgtcgta 393 ||||||| |||| | ||||| || |||||||||| ||| |||||||||||| |||||| Sbjct: 1286 tccatcacccacctgaccttcgcctccacctcctccgccaccaccacctcctcgtcgta 1228
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 352 ctttgctgccacctcctcggcctccaccacctcct 386 ||||||||| |||||||||||| ||||||||||| Sbjct: 23950 ctttgctgcggcctcctcggccttcaccacctcct 23984
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 352 ctttgctgccacctcctcggcctccaccacctcct 386 ||||||||| |||||||||||| ||||||||||| Sbjct: 89808 ctttgctgcggcctcctcggccttcaccacctcct 89842
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 352 ctttgctgccacctcctcggcctccaccacctcct 386 ||||||||| |||||||||||| ||||||||||| Sbjct: 18728530 ctttgctgcggcctcctcggccttcaccacctcct 18728564
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 335 tccatcatccacttcacctttgctgccacctcctcggcctccaccacctccttgtcgta 393 ||||||| |||| | ||||| || |||||||||| ||| |||||||||||| |||||| Sbjct: 84449 tccatcacccacctgaccttcgcctccacctcctccgccaccaccacctcctcgtcgta 84391
>dbj|AK119562.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B10, full insert sequence Length = 1817 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 335 tccatcatccacttcacctttgctgccacctcctcggcctccaccacctccttgtcgta 393 ||||||| |||| | ||||| || |||||||||| ||| |||||||||||| |||||| Sbjct: 1402 tccatcacccacctgaccttcgcctccacctcctccgccaccaccacctcctcgtcgta 1344
>dbj|AK103129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119O19, full insert sequence Length = 1831 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 335 tccatcatccacttcacctttgctgccacctcctcggcctccaccacctccttgtcgta 393 ||||||| |||| | ||||| || |||||||||| ||| |||||||||||| |||||| Sbjct: 1403 tccatcacccacctgaccttcgcctccacctcctccgccaccaccacctcctcgtcgta 1345
>dbj|AK073955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A20, full insert sequence Length = 1022 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 352 ctttgctgccacctcctcggcctccaccacctcct 386 ||||||||| |||||||||||| ||||||||||| Sbjct: 664 ctttgctgcggcctcctcggccttcaccacctcct 630
>dbj|AK065450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013008B02, full insert sequence Length = 1647 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 335 tccatcatccacttcacctttgctgccacctcctcggcctccaccacctccttgtcgta 393 ||||||| |||| | ||||| || |||||||||| ||| |||||||||||| |||||| Sbjct: 1385 tccatcacccacctgaccttcgcctccacctcctccgccaccaccacctcctcgtcgta 1327
>gb|AY108318.1| Zea mays PCO131281 mRNA sequence Length = 1204 Score = 46.1 bits (23), Expect = 0.095 Identities = 59/71 (83%) Strand = Plus / Minus Query: 257 ccgccctcacgcattgcctcattcgcctgcctcatggccgcctgcgtccgctcacggatc 316 ||||||||||||| || || || ||||||| |||||||||| |||| |||| |||| | Sbjct: 976 ccgccctcacgcagcgcgtccttggcctgccgcatggccgccagcgtgcgcttccggagc 917 Query: 317 accctcccgcc 327 | ||||||||| Sbjct: 916 atcctcccgcc 906
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 352 ctttgctgccacctcctcggcctccaccacctcct 386 ||||||||| |||||||||||| ||||||||||| Sbjct: 18739383 ctttgctgcggcctcctcggccttcaccacctcct 18739417
>gb|L02957.1|XELRNPA3B Xenopus laevis ribonucleoprotein mRNA, complete cds Length = 1652 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 360 ccacctcctcggcctccaccacc 382 ||||||||||||||||||||||| Sbjct: 801 ccacctcctcggcctccaccacc 779
>gb|BT017281.1| Zea mays clone EL01N0314D10.c mRNA sequence Length = 670 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 354 ttgctgccacctcctcggcctccaccacc 382 |||||||||||||| | |||||||||||| Sbjct: 390 ttgctgccacctcccccgcctccaccacc 362
>ref|XM_617909.2| PREDICTED: Bos taurus similar to PHD finger protein 2 (LOC537728), mRNA Length = 3431 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 360 ccacctcctcggcctccaccacctc 384 ||||| ||||||||||||||||||| Sbjct: 2836 ccaccacctcggcctccaccacctc 2860 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 cacctcctcggcctccaccacctc 384 |||| ||||||||||||||||||| Sbjct: 2822 caccacctcggcctccaccacctc 2845
>ref|XM_748823.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g07180) partial mRNA Length = 2511 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 cctcggcctccaccacctcct 386 ||||||||||||||||||||| Sbjct: 2462 cctcggcctccaccacctcct 2442
>ref|XM_537539.2| PREDICTED: Canis familiaris similar to DVL-binding protein DAPLE (LOC480418), mRNA Length = 7086 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 tcctcggcctccaccacctccttgt 389 |||||| |||||||||||||||||| Sbjct: 6500 tcctcgtcctccaccacctccttgt 6476
>ref|XM_541324.2| PREDICTED: Canis familiaris similar to PHD finger protein 2 isoform a (LOC484208), mRNA Length = 3720 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 360 ccacctcctcggcctccaccacctc 384 ||||| ||||||||||||||||||| Sbjct: 3245 ccaccacctcggcctccaccacctc 3269
>ref|XM_502674.1| Yarrowia lipolytica CLIB122, YALI0D10879g predicted mRNA Length = 5556 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 362 acctcctcggcctccaccacctcct 386 |||||||| |||||||||||||||| Sbjct: 3198 acctcctccgcctccaccacctcct 3222
>ref|XM_624678.1| PREDICTED: Apis mellifera similar to CG3606-PB, isoform B (LOC552303), mRNA Length = 1107 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 ctcctcggcctccaccacctc 384 ||||||||||||||||||||| Sbjct: 1075 ctcctcggcctccaccacctc 1055
>gb|AY106898.1| Zea mays PCO148953 mRNA sequence Length = 909 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 354 ttgctgccacctcctcggcctccaccacc 382 |||||||||||||| | |||||||||||| Sbjct: 443 ttgctgccacctcccccgcctccaccacc 415
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 363 cctcctcggcctccaccacctcctt 387 ||||||| ||||||||||||||||| Sbjct: 785366 cctcctccgcctccaccacctcctt 785390
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 362 acctcctcggcctccaccacctcct 386 |||||||| |||||||||||||||| Sbjct: 1364113 acctcctccgcctccaccacctcct 1364137
>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence Length = 224088 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 gccacctcctcggcctccacc 379 ||||||||||||||||||||| Sbjct: 42473 gccacctcctcggcctccacc 42493
>gb|AC145448.3| Dasypus novemcinctus clone VMRC5-267J9, complete sequence Length = 149428 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagggctagcccaagctccttctcca 431 ||||||||| ||||||||||||||||| Sbjct: 43877 gccagggctctcccaagctccttctcca 43850
>gb|AY376432.1| Peromyscus truei montipinoris genotype TK92333 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>gb|AY376421.1| Peromyscus gratus gratus genotype TK46354 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>ref|NM_020098.1| Rattus norvegicus piccolo (presynaptic cytomatrix protein) (Pclo), mRNA Length = 15961 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 359 gccacctcctcggcctccaccacctcct 386 ||||||||||| ||||||||||||||| Sbjct: 7213 gccacctcctccccctccaccacctcct 7240
>ref|NM_016423.1| Homo sapiens zinc finger protein 219 (ZNF219), mRNA Length = 3039 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||| ||||||||||||||||| Sbjct: 1723 cctcctgggcctccaccacctcct 1700
>gb|AC114679.10| Mus musculus chromosome 3, clone RP24-235E22, complete sequence Length = 157152 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 acccatccattgccagggct 412 |||||||||||||||||||| Sbjct: 24345 acccatccattgccagggct 24326
>ref|XM_417171.1| PREDICTED: Gallus gallus similar to KIAA1826 protein (LOC418977), mRNA Length = 2295 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ttttcgaagcaacttaatac 134 |||||||||||||||||||| Sbjct: 851 ttttcgaagcaacttaatac 870
>ref|XM_869741.1| PREDICTED: Bos taurus hypothetical protein LOC617472 (LOC617472), mRNA Length = 1041 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ctcggcctccaccacctcct 386 |||||||||||||||||||| Sbjct: 671 ctcggcctccaccacctcct 652
>gb|AY195797.1| Neotomodon alstoni isolate TK93093 cytochrome b (cytb) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cgcctgcgtccgctcacgga 314 |||||||||||||||||||| Sbjct: 4657918 cgcctgcgtccgctcacgga 4657937
>gb|DQ000481.1| Peromyscus hylocetes voucher TK45309 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>gb|AC149631.3| Rhinolophus ferrumequinum clone VMRC7-80B12, complete sequence Length = 142320 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagggctagcccaagctccttctcca 431 ||||||||| ||||||||||||||||| Sbjct: 27138 gccagggctgtcccaagctccttctcca 27111
>gb|DQ179811.1| Peromyscus attwateri isolate TK23396 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>ref|XM_540000.2| PREDICTED: Canis familiaris hypothetical LOC482885 (LOC482885), mRNA Length = 4182 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tgctgccacctcctcggcct 374 |||||||||||||||||||| Sbjct: 1752 tgctgccacctcctcggcct 1771
>gb|AC124727.4| Mus musculus BAC clone RP23-465O22 from chromosome 3, complete sequence Length = 181528 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 357 ctgccacctcctcggcctccaccacctccttgtcgt 392 ||||| ||||||| |||||||| |||||||||||| Sbjct: 80662 ctgcctcctcctcctcctccacctcctccttgtcgt 80627
>ref|XM_546993.2| PREDICTED: Canis familiaris similar to zinc finger protein 316 (LOC489875), mRNA Length = 3015 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctccttgtc 390 ||||||| ||||||||||||||||||| Sbjct: 196 cctcctcttcctccaccacctccttgtc 169
>gb|AY263614.1| Peromyscus attwateri cytochrome b (cytb) gene, partial sequence; mitochondrial gene for mitochondrial product Length = 1122 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 762 acttaatactcccgcacaca 781
>emb|AJ633778.1| Cricetus cricetus mitochondrial partial cytB gene for cytochrome B, allele CCcb23 Length = 925 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 688 acttaatactcccgcacaca 707
>emb|AJ634780.2| Nilaparvata lugens mRNA for partial putative diuretic hormone receptor I Length = 2196 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 ||||||| |||||||||||||||| Sbjct: 1708 cctcctccgcctccaccacctcct 1685
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 ccgcctgcgtccgctcacggatca 317 |||||||||||||| ||||||||| Sbjct: 3449621 ccgcctgcgtccgcacacggatca 3449644
>emb|BX950272.2| Gallus gallus finished cDNA, clone ChEST1024o16 Length = 794 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ttttcgaagcaacttaatac 134 |||||||||||||||||||| Sbjct: 293 ttttcgaagcaacttaatac 312
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagggctagcccaagctccttctcca 431 ||||||||| ||||||||||||||||| Sbjct: 1514485 gccagggctgtcccaagctccttctcca 1514458
>gb|AF155385.1|AF155385 Peromyscus attwateri isolate 1b cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product Length = 1143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>gb|AF155384.1|AF155384 Peromyscus attwateri isolate 1a cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product Length = 1143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>gb|AC011519.7|AC011519 Homo sapiens chromosome 19 clone LLNLF-192H5, complete sequence Length = 43310 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gccacctcctcggcctccac 378 |||||||||||||||||||| Sbjct: 32842 gccacctcctcggcctccac 32823
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 364 ctcctcggcctccaccacctcctt 387 |||||| ||||||||||||||||| Sbjct: 580911 ctcctccgcctccaccacctcctt 580934
>gb|AF227534.1|AF227534 Rattus norvegicus multidomain presynaptic cytomatrix protein Piccolo mRNA, complete cds, long splice variant Length = 15961 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 359 gccacctcctcggcctccaccacctcct 386 ||||||||||| ||||||||||||||| Sbjct: 7213 gccacctcctccccctccaccacctcct 7240
>gb|AF138789.2|AF138789 Rattus norvegicus multidomain presynaptic cytomatrix protein Piccolo mRNA, complete cds, short splice variant Length = 14825 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 359 gccacctcctcggcctccaccacctcct 386 ||||||||||| ||||||||||||||| Sbjct: 7213 gccacctcctccccctccaccacctcct 7240
>dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, map 22, complete sequences Length = 220932 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 cttcacctttgctgccacctcctc 369 |||||||| ||||||||||||||| Sbjct: 143587 cttcacctctgctgccacctcctc 143564
>emb|AJ973386.1| Cricetulus longicaudatus mitochondrial partial cytb gene for cytochrome b Length = 925 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 688 acttaatactcccgcacaca 707
>gb|AF108703.1|AF108703 Peromyscus truei cytochrome B (cytB) gene, mitochondrial gene encoding mitochondrial protein, complete cds Length = 1144 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 cttcacctttgctgccacctcctc 369 |||||||| ||||||||||||||| Sbjct: 102422 cttcacctctgctgccacctcctc 102399
>gb|AC113315.8| Mus musculus chromosome 3, clone RP23-441B22, complete sequence Length = 187126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 acccatccattgccagggct 412 |||||||||||||||||||| Sbjct: 154636 acccatccattgccagggct 154617
>gb|AC148372.3| Carollia perspicillata clone 102I5, complete sequence Length = 161035 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagggctagcccaagctccttctcca 431 ||||||||| ||||||||||||||||| Sbjct: 145087 gccagggctctcccaagctccttctcca 145060
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 404 gccagggctagcccaagctccttctcca 431 ||||||||| ||||||||||||||||| Sbjct: 1485555 gccagggctctcccaagctccttctcca 1485528
>dbj|AB033693.1| Cricetulus griseus mitochondrial cytb gene for cytochrome b, partial cds Length = 1140 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 acttaatactcccgcacaca 145 |||||||||||||||||||| Sbjct: 783 acttaatactcccgcacaca 802
>dbj|AP000158.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 10/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 cttcacctttgctgccacctcctc 369 |||||||| ||||||||||||||| Sbjct: 49839 cttcacctctgctgccacctcctc 49816
>dbj|AP000014.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 7/13 Length = 302521 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 cttcacctttgctgccacctcctc 369 |||||||| ||||||||||||||| Sbjct: 286756 cttcacctctgctgccacctcctc 286733
>dbj|AP001433.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T2062, LB7T-ERG region, complete sequence Length = 61169 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 cttcacctttgctgccacctcctc 369 |||||||| ||||||||||||||| Sbjct: 53093 cttcacctctgctgccacctcctc 53070
>dbj|AB015427.1| Homo sapiens mRNA for zinc finger protein 219, complete cds Length = 3039 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 cctcctcggcctccaccacctcct 386 |||||| ||||||||||||||||| Sbjct: 1723 cctcctgggcctccaccacctcct 1700 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,493,067 Number of Sequences: 3902068 Number of extensions: 3493067 Number of successful extensions: 80197 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79675 Number of HSP's gapped (non-prelim): 522 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
