ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor 33 0.32
2RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-ass... 33 0.55
3IWS1_HUMAN (Q96ST2) IWS1-like protein 32 0.72
4NUOF2_RHIME (P56913) NADH-quinone oxidoreductase chain F 2 (EC 1... 30 2.7
5MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.4... 30 3.6
6ALG10_ASPFU (Q4X162) Alpha-1,2 glucosyltransferase alg10 (EC 2.4... 30 3.6
7SECA_ECOLI (P10408) Preprotein translocase secA subunit 30 4.7
8MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.4... 29 6.1
9TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.... 29 6.1
10BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui 29 6.1
11MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility... 29 6.1
12IWS1_ASPFU (Q4WSM6) Transcription factor iws1 29 7.9
13IWS1_RAT (Q3SWT4) IWS1-like protein 29 7.9

>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor|
          Length = 639

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 485 PKPQSRPPTAEEELDRQ-----HRKEMEEGAFQRAPSHESSDSRHEDPVEPHSQQE 333
           P P+ R P  EEE +++     HRKE + G   +    E  +  H  P +PH ++E
Sbjct: 104 PFPRPRQPHQEEEHEQKEEHEWHRKEEKHGG--KGSEEEQDEREHPRPHQPHQKEE 157



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>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1857

 Score = 32.7 bits (73), Expect = 0.55
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
 Frame = -1

Query: 485  PKPQSRPPTA-------EEELDRQHRKEM----EEGAFQRAPSHESSDSRHEDPVEPHSQ 339
            P P++R P A       +     QH   +      GA   +PS E +   HEDP  P SQ
Sbjct: 1094 PSPEARAPLASASPGPGDPSSPLQHPAPLGTQEPPGAPPASPSREMAKGSHEDPPAPCSQ 1153

Query: 338  QEASA 324
            +EA A
Sbjct: 1154 EEAGA 1158



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>IWS1_HUMAN (Q96ST2) IWS1-like protein|
          Length = 819

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/59 (20%), Positives = 31/59 (52%)
 Frame = -1

Query: 497 SNNKPKPQSRPPTAEEELDRQHRKEMEEGAFQRAPSHESSDSRHEDPVEPHSQQEASAD 321
           S+++ +   + P ++ E +   + ++ +   +  P H++SDS +E+P +P      S +
Sbjct: 157 SDSEIEELQKSPASDSETEDALKPQISDSESEEPPRHQASDSENEEPPKPRMSDSESEE 215



 Score = 29.6 bits (65), Expect = 4.7
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -1

Query: 497 SNNKPKPQSRPPTAEEELDRQHRKEMEEGAFQRAPSHESSDSRHEDPVEPHSQQEASAD 321
           S N+  P  +P  ++ E +   + ++ +   +  P H++SDS +E+  +P      S D
Sbjct: 198 SENEEPP--KPRMSDSESEELPKPQVSDSESEEPPRHQASDSENEELPKPRISDSESED 254



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>NUOF2_RHIME (P56913) NADH-quinone oxidoreductase chain F 2 (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain F 2) (NDH-1, chain F 2)
          Length = 421

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 77  VLKNPSYFRGSGAPRKPVPQRFGRSGDIRPAVLRRERIQA*ARALVLHHPFRPPP 241
           V++  ++FRG G  R P P+ +  SG +R   L    +    R LV  H   P P
Sbjct: 220 VMRGSAWFRGIGPDRSPGPKLYCLSGQVRKPGLYELPMGISLRELVEEHAGGPLP 274



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>MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4)
          Length = 1784

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 482  KPQSRPPTAEEELDRQHRKEMEEGA-FQRAPSHESSDSRHEDPVEPHSQQEASAD 321
            KP+      EEE + +  +E EEG   ++ P    S  + E  + P  +  A  D
Sbjct: 1063 KPEEEEEEEEEEEEEEGEEEEEEGGNVEKDPDGAKSQEKEEPEISPEKEDSARLD 1117



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>ALG10_ASPFU (Q4X162) Alpha-1,2 glucosyltransferase alg10 (EC 2.4.1.-)|
           (Alpha-2-glucosyltransferase alg10)
           (Dolichyl-phosphoglucose-dependent glucosyltransferase
           alg10) (Asparagine-linked glycosylation protein 10)
          Length = 614

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 497 SNNKPKPQSRPPTAEEELDRQHRKEMEEGAFQRAPSHESSDSRHEDPV--EPHSQQEASA 324
           S  KP+PQ  P T   EL    + +++E A ++  S   S S+    V   P +Q + S 
Sbjct: 428 STTKPQPQFVPITKSNELAAAQKGQLKEAARKKEKSERKSKSKKASQVTASPPAQDQFSP 487

Query: 323 D 321
           +
Sbjct: 488 E 488



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>SECA_ECOLI (P10408) Preprotein translocase secA subunit|
          Length = 901

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 482 KPQSRPPTAEEELDRQHRKEMEEGAFQRAPSHESSDS 372
           K Q R P   EEL++Q R E E  A  +  SH+  DS
Sbjct: 828 KVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDS 864



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>MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            3) (Runt-related transcription factor-binding protein 2)
            (Monocytic leukemia zinc finger protein) (Zinc finger
            protei
          Length = 2004

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 497  SNNKPKPQSRPPTAEEELDRQHRKEMEEGAFQRAPSHESSDSRHEDPVEPHSQQEASADT 318
            S+N P+ +++ P  EEE ++    E +          E      E+P EP  +++A+A+T
Sbjct: 1257 SSNSPETETKEPEVEEEEEKPRVSEEQR-------QSEEEQQELEEP-EPEEEEDAAAET 1308



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>TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)|
           (Thousand and one amino acid protein 2)
          Length = 1055

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
 Frame = -1

Query: 476 QSRPPT-----------AEEELDRQHRKEMEEGAFQRAPSHESSDSRHEDPVEPHSQQ 336
           + RPPT           A  ELD    ++M++  FQ AP+   +++  E+ + P SQ+
Sbjct: 283 RERPPTVIMDLIQRTKDAVRELDNLQYRKMKKILFQEAPNGPGAEAPEEEELTPCSQE 340



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>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui|
          Length = 677

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = -1

Query: 479 PQSRPPTAEEELDRQHRKEMEEGAFQ------RAPSHESSDSRHEDPVEPHSQQEASAD 321
           P++ PP+  ++  +QH+    +   Q      ++P  +    R + P +P +QQ +S D
Sbjct: 321 PKAEPPSRAQKSPQQHQPPPPKSPQQHQPPPPKSPQQQPPPQREQTPPQPKTQQPSSND 379



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>MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility protein 1|
            homolog precursor (Very large G-protein coupled receptor
            1)
          Length = 6199

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 93   PILEEAEPHESRFRSGSDAQVTSGRPCCDGSES 191
            P   E +PH  R  +G+DA   SGRP   GS S
Sbjct: 1300 PSAVELQPHSRRRHAGTDALFFSGRPGAYGSIS 1332



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>IWS1_ASPFU (Q4WSM6) Transcription factor iws1|
          Length = 460

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 443 DRQHRKEM-EEGAFQRAPSHESSDSRHEDPVEPHSQQEASADT 318
           D  H +E  EEGA    P+ ES    HED  +P  +++A  D+
Sbjct: 38  DEDHNEEAPEEGAASATPAAESVAETHED--DPADKEDAGVDS 78



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>IWS1_RAT (Q3SWT4) IWS1-like protein|
          Length = 764

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = -1

Query: 497 SNNKPKPQSRPPTAEEELDRQHRKEMEEGAFQRAPSHESSDSRHEDPVEPHSQQEASAD 321
           S+++ +   +P  ++ E +   R ++ +   +  P    SDS  EDP  P +    S +
Sbjct: 183 SDSESEELPKPRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRPQASDSESEE 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,800,922
Number of Sequences: 219361
Number of extensions: 790161
Number of successful extensions: 2837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2827
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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