ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 1.0
2ref|XM_867958.1| PREDICTED: Bos taurus similar to CG4813-PA (LOC... 38 4.1
3gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome... 38 4.1
4gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome... 38 4.1
5emb|AL831784.17| Human DNA sequence from clone RP13-436F16 on ch... 38 4.1
6emb|AL161945.31| Human DNA sequence from clone RP4-606D23 on chr... 38 4.1
7emb|AL021815.3|SPBC8E4 S.pombe chromosome II cosmid c8E4 38 4.1
8gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 geno... 38 4.1
9gb|AF332093.1|AF332093 White spot syndrome virus, complete genome 38 4.1
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.1
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.1
12gb|AF369029.2| White spot syndrome virus, complete genome 38 4.1
13dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.1
14gb|AF440570.1| Shrimp white spot syndrome virus, complete genome 38 4.1
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 4.1
16gb|U92007.1|WSU92007 White spot syndrome baculovirus, partial DN... 38 4.1
17emb|AL844854.6| Mouse DNA sequence from clone RP23-368I1 on chro... 38 4.1

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     acacgcacacacgcgagcag 66
              ||||||||||||||||||||
Sbjct: 469966 acacgcacacacgcgagcag 469947



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>ref|XM_867958.1| PREDICTED: Bos taurus similar to CG4813-PA (LOC616005), mRNA
          Length = 2162

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 42   cacgaacacgcacacacgc 60
            |||||||||||||||||||
Sbjct: 1373 cacgaacacgcacacacgc 1391



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>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence
          Length = 149145

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    gaagtctcttattacacta 30
             |||||||||||||||||||
Sbjct: 32755 gaagtctcttattacacta 32773



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>gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome 3, complete sequence
          Length = 160339

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     gaagtctcttattacacta 30
              |||||||||||||||||||
Sbjct: 150677 gaagtctcttattacacta 150695



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>emb|AL831784.17| Human DNA sequence from clone RP13-436F16 on chromosome 1 Contains
            the 5' end of the MMEL2 gene for membrane
            metallo-endopeptidase-like 2, a novel gene and three CpG
            islands, complete sequence
          Length = 79425

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 47   acacgcacacacgcgagca 65
            |||||||||||||||||||
Sbjct: 7296 acacgcacacacgcgagca 7278



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>emb|AL161945.31| Human DNA sequence from clone RP4-606D23 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 70299

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 38    aaagcacgaacacgcacacacgc 60
             ||||||||| |||||||||||||
Sbjct: 39792 aaagcacgagcacgcacacacgc 39770



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>emb|AL021815.3|SPBC8E4 S.pombe chromosome II cosmid c8E4
          Length = 35922

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    cagaaattaacagctaaca 82
             |||||||||||||||||||
Sbjct: 20560 cagaaattaacagctaaca 20578



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>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete
             sequence
          Length = 194361

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    aaattaacagctaacatac 85
             |||||||||||||||||||
Sbjct: 65877 aaattaacagctaacatac 65895



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>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     acccactgatgaagtctct 20
             |||||||||||||||||||
Sbjct: 47165 acccactgatgaagtctct 47147



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 67       aaattaacagctaacatac 85
                |||||||||||||||||||
Sbjct: 20188142 aaattaacagctaacatac 20188160



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 39       aagcacgaacacgcacacacgcg 61
                |||||||||||||||| ||||||
Sbjct: 24173936 aagcacgaacacgcacgcacgcg 24173914



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>gb|AF369029.2| White spot syndrome virus, complete genome
          Length = 292967

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     acccactgatgaagtctct 20
             |||||||||||||||||||
Sbjct: 96117 acccactgatgaagtctct 96099



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>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E03
          Length = 164839

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 39     aagcacgaacacgcacacacgcg 61
              |||||||||||||||| ||||||
Sbjct: 149758 aagcacgaacacgcacgcacgcg 149736



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>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     acccactgatgaagtctct 20
             |||||||||||||||||||
Sbjct: 80746 acccactgatgaagtctct 80728



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 67       aaattaacagctaacatac 85
                |||||||||||||||||||
Sbjct: 20199418 aaattaacagctaacatac 20199436



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>gb|U92007.1|WSU92007 White spot syndrome baculovirus, partial DNA sequence
          Length = 2424

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 2  acccactgatgaagtctct 20
          |||||||||||||||||||
Sbjct: 54 acccactgatgaagtctct 36



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>emb|AL844854.6| Mouse DNA sequence from clone RP23-368I1 on chromosome 2, complete
            sequence
          Length = 185135

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 47   acacgcacacacgcgagca 65
            |||||||||||||||||||
Sbjct: 6328 acacgcacacacgcgagca 6346


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 692,275
Number of Sequences: 3902068
Number of extensions: 692275
Number of successful extensions: 57766
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57641
Number of HSP's gapped (non-prelim): 125
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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