ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC118637.18| Mus musculus chromosome 8, clone RP24-107N18, co... 46 0.064
2gb|AC129301.3| Mus musculus BAC clone RP24-434C14 from chromosom... 46 0.064
3emb|Z84467.1|HS26H23 Human DNA sequence from clone RP1-26H23 on ... 46 0.064
4gb|BC088588.1| Xenopus tropicalis hypothetical LOC496866, mRNA (... 44 0.25
5ref|NM_001011394.2| Xenopus tropicalis hypothetical LOC496866 (L... 44 0.25
6emb|CR760337.2| Xenopus tropicalis finished cDNA, clone TNeu052i12 44 0.25
7gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosom... 42 0.99
8gb|AC150414.2| Branchiostoma floridae clone CH302-62C22, complet... 42 0.99
9gb|BC097135.1| Danio rerio translocation protein 1, mRNA (cDNA c... 42 0.99
10emb|CR931792.9| Zebrafish DNA sequence from clone DKEY-180L1 in ... 42 0.99
11gb|AC124544.4| Mus musculus BAC clone RP23-266K17 from 8, comple... 42 0.99
12gb|AC125452.7| Mus musculus, clone RP23-43F6, complete sequence 42 0.99
13gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 42 0.99
14ref|NM_025540.1| Mus musculus sarcolipin (Sln), mRNA 42 0.99
15emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome;... 42 0.99
16gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, co... 42 0.99
17emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in ... 42 0.99
18gb|AC182639.3| Pan troglodytes BAC clone CH251-322N11 from chrom... 42 0.99
19emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in ... 42 0.99
20gb|AC097060.2| Homo sapiens chromosome 1 clone RP11-412H9, compl... 42 0.99
21dbj|AK009809.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 0.99
22dbj|AK009005.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 0.99
23dbj|AK008896.1| Mus musculus adult male stomach cDNA, RIKEN full... 42 0.99
24dbj|AK008863.1| Mus musculus adult male stomach cDNA, RIKEN full... 42 0.99
25dbj|AK045227.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 42 0.99
26gb|AC131954.1| Homo sapiens BAC clone RP11-761I13 from 2, comple... 42 0.99
27ref|NM_001025530.1| Danio rerio translocation protein 1 (tloc1),... 42 0.99
28gb|AC134615.5| Mus musculus BAC clone RP23-148H3 from 8, complet... 42 0.99
29gb|BC028496.1| Mus musculus sarcolipin, mRNA (cDNA clone MGC:410... 42 0.99
30gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 3.9
31gb|AC103580.4| Trypanosoma brucei chromosome 4 clone RPCI93-5E12... 40 3.9
32gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complet... 40 3.9
33gb|AC155728.13| Mus musculus 6 BAC RP24-162H1 (Roswell Park Canc... 40 3.9
34gb|AF040655.2| Caenorhabditis elegans cosmid T24E12, complete se... 40 3.9
35ref|XM_823514.1| Trypanosoma brucei TREU927 hypothetical protein... 40 3.9
36gb|AC104096.5| Mus musculus BAC clone RP24-370O22 from chromosom... 40 3.9
37gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, comple... 40 3.9
38gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, com... 40 3.9
39gb|AC119242.5| Mus musculus chromosome 6, clone RP24-229C13, com... 40 3.9
40gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, com... 40 3.9
41gb|AC091514.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 3.9
42emb|AL109964.20|HS1118M15 Human DNA sequence from clone RP5-1118... 40 3.9
43emb|AL683819.19| Mouse DNA sequence from clone RP23-126J10 on ch... 40 3.9
44emb|AL163832.1|ATF27K19 Arabidopsis thaliana DNA chromosome 3, B... 40 3.9
45emb|AJ420748.2|HSA420748 Homo sapiens partial CPT1A gene for car... 40 3.9
46emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on ch... 40 3.9
47emb|AL645757.13| Mouse DNA sequence from clone DN-340J1 on chrom... 40 3.9
48emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 12... 40 3.9
49gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, comp... 40 3.9
50dbj|AK162689.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 3.9
51gb|AC016954.43| Homo sapiens 12 BAC RP11-956A19 (Roswell Park Ca... 40 3.9
52gb|AC154141.7| Mus musculus chromosome 7, clone RP24-343G19, com... 40 3.9
53gb|AC152959.2| Mus musculus 6 BAC RP23-78B5 (Roswell Park Cancer... 40 3.9
54gb|AC024259.17| Homo sapiens chromosome 7 clone RP11-105B19, com... 40 3.9
55gb|AC019179.4|AC019179 Homo sapiens BAC clone RP11-240A16 from 4... 40 3.9
56dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
57gb|AC158528.1| Mus musculus BAC clone RP23-259G7 from chromosome... 40 3.9
58gb|AC117498.6| Homo sapiens 12 BAC RP11-579D7 (Roswell Park Canc... 40 3.9
59dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
60dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
61gb|AF245277.1|AF245277 Dictyostelium discoideum kinesin Unc104/K... 40 3.9
62dbj|AK000100.1| Homo sapiens cDNA FLJ20093 fis, clone COL04263 40 3.9
63dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.9
64dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.9
65emb|CT033754.8| Mouse DNA sequence from clone RP23-174E11 on chr... 40 3.9
66gb|AC140369.2| Mus musculus BAC clone RP23-200L3 from 3, complet... 40 3.9
67emb|CT030649.7| Mouse DNA sequence from clone RP24-354G13 on chr... 40 3.9
68dbj|AP006697.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 3.9
69emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chr... 40 3.9
70gb|M30949.1|ORARGIT Orangutan rRNA gene internal transcribed spa... 40 3.9
71emb|AL691436.7| Mouse DNA sequence from clone RP23-357M4 on chro... 40 3.9
72dbj|AB030754.1| Mus musculus prkdc gene for DNA-dependent protei... 40 3.9 
>gb|AC118637.18| Mus musculus chromosome 8, clone RP24-107N18, complete sequence
          Length = 181693

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 48    aaggagaaaagaaaataagaaaa 70
             |||||||||||||||||||||||
Sbjct: 61076 aaggagaaaagaaaataagaaaa 61054
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>gb|AC129301.3| Mus musculus BAC clone RP24-434C14 from chromosome 8, complete sequence
          Length = 181111

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 48    aaggagaaaagaaaataagaaaa 70
             |||||||||||||||||||||||
Sbjct: 31672 aaggagaaaagaaaataagaaaa 31694
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>emb|Z84467.1|HS26H23 Human DNA sequence from clone RP1-26H23 on chromosome 13 Contains the
             5' end of the gene for androgen-induced prostate
             proliferative shutoff associated protein (AS3) (CG008,
             FLJ23236, KIAA0979) and a CpG island, complete sequence
          Length = 91835

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 44    aaacaaggagaaaagaaaataagaaaa 70
             ||||||||||||||||||| |||||||
Sbjct: 44901 aaacaaggagaaaagaaaaaaagaaaa 44875
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>gb|BC088588.1| Xenopus tropicalis hypothetical LOC496866, mRNA (cDNA clone MGC:97809
            IMAGE:6991409), complete cds
          Length = 2092

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 211  aaaacgaggagccagaagcagc 232
            ||||||||||||||||||||||
Sbjct: 1443 aaaacgaggagccagaagcagc 1422
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>ref|NM_001011394.2| Xenopus tropicalis hypothetical LOC496866 (LOC496866), mRNA
          Length = 2215

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 211  aaaacgaggagccagaagcagc 232
            ||||||||||||||||||||||
Sbjct: 1457 aaaacgaggagccagaagcagc 1436
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>emb|CR760337.2| Xenopus tropicalis finished cDNA, clone TNeu052i12
          Length = 2215

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 211  aaaacgaggagccagaagcagc 232
            ||||||||||||||||||||||
Sbjct: 1457 aaaacgaggagccagaagcagc 1436
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>gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosome 9, complete sequence
          Length = 176272

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 216   gaggagccagaagcagcatct 236
             |||||||||||||||||||||
Sbjct: 57510 gaggagccagaagcagcatct 57530
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>gb|AC150414.2| Branchiostoma floridae clone CH302-62C22, complete sequence
          Length = 210179

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   ggagccagaagcagcatcttc 238
             |||||||||||||||||||||
Sbjct: 37672 ggagccagaagcagcatcttc 37692
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>gb|BC097135.1| Danio rerio translocation protein 1, mRNA (cDNA clone MGC:114073
            IMAGE:7438160), complete cds
          Length = 1335

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  tgctgtgctgcgatccttcgt 189
            |||||||||||||||||||||
Sbjct: 1140 tgctgtgctgcgatccttcgt 1120
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>emb|CR931792.9| Zebrafish DNA sequence from clone DKEY-180L1 in linkage group 13,
              complete sequence
          Length = 163673

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 47     caaggagaaaagaaaataagaaaag 71
              |||| ||||||||||||||||||||
Sbjct: 101769 caagaagaaaagaaaataagaaaag 101793
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>gb|AC124544.4| Mus musculus BAC clone RP23-266K17 from 8, complete sequence
          Length = 150266

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 41    acaaaacaaggagaaaagaaaataagaaa 69
             |||||||||| ||||||||||| ||||||
Sbjct: 12553 acaaaacaagaagaaaagaaaagaagaaa 12525
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>gb|AC125452.7| Mus musculus, clone RP23-43F6, complete sequence
          Length = 162045

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    gaaaagaaaataagaaaaggc 73
             |||||||||||||||||||||
Sbjct: 60050 gaaaagaaaataagaaaaggc 60070
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 52      agaaaagaaaataagaaaagg 72
               |||||||||||||||||||||
Sbjct: 1863000 agaaaagaaaataagaaaagg 1863020
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>ref|NM_025540.1| Mus musculus sarcolipin (Sln), mRNA
          Length = 1321

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 216 gaggagccagaagcagcatct 236
           |||||||||||||||||||||
Sbjct: 414 gaggagccagaagcagcatct 394
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>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7
          Length = 349391

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    gttgccgatggatcagcagga 104
             |||||||||||||||||||||
Sbjct: 72007 gttgccgatggatcagcagga 72027
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>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence
          Length = 199527

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 41     acaaaacaaggagaaaagaaaataa 65
              ||||||||||||||||| |||||||
Sbjct: 143081 acaaaacaaggagaaaacaaaataa 143105
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>emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in linkage group 2,
             complete sequence
          Length = 249584

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 169   tgctgtgctgcgatccttcgt 189
             |||||||||||||||||||||
Sbjct: 76070 tgctgtgctgcgatccttcgt 76090
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>gb|AC182639.3| Pan troglodytes BAC clone CH251-322N11 from chromosome 7, complete
             sequence
          Length = 162580

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    aaggagaaaagaaaataagaa 68
             |||||||||||||||||||||
Sbjct: 71093 aaggagaaaagaaaataagaa 71073
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>emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in linkage group 2, complete
              sequence
          Length = 228024

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 169    tgctgtgctgcgatccttcgt 189
              |||||||||||||||||||||
Sbjct: 142650 tgctgtgctgcgatccttcgt 142670
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>gb|AC097060.2| Homo sapiens chromosome 1 clone RP11-412H9, complete sequence
          Length = 139177

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    agaaaagaaaataagaaaagg 72
             |||||||||||||||||||||
Sbjct: 87692 agaaaagaaaataagaaaagg 87712
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>dbj|AK009809.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310045A07 product:similar to SARCOLIPIN
           [Oryctolagus cuniculus], full insert sequence
          Length = 1321

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 216 gaggagccagaagcagcatct 236
           |||||||||||||||||||||
Sbjct: 414 gaggagccagaagcagcatct 394
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>dbj|AK009005.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2300002E13 product:similar to SARCOLIPIN
           [Oryctolagus cuniculus], full insert sequence
          Length = 515

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 216 gaggagccagaagcagcatct 236
           |||||||||||||||||||||
Sbjct: 329 gaggagccagaagcagcatct 309
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>dbj|AK008896.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210411E13 product:similar to SARCOLIPIN
           [Oryctolagus cuniculus], full insert sequence
          Length = 516

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 216 gaggagccagaagcagcatct 236
           |||||||||||||||||||||
Sbjct: 327 gaggagccagaagcagcatct 307
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>dbj|AK008863.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210408O14 product:similar to SARCOLIPIN
           [Oryctolagus cuniculus], full insert sequence
          Length = 518

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 216 gaggagccagaagcagcatct 236
           |||||||||||||||||||||
Sbjct: 329 gaggagccagaagcagcatct 309
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>dbj|AK045227.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130049J04
            product:unclassifiable, full insert sequence
          Length = 2761

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 41   acaaaacaaggagaaaagaaaataa 65
            ||||||||||||||||| |||||||
Sbjct: 1292 acaaaacaaggagaaaacaaaataa 1268
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>gb|AC131954.1| Homo sapiens BAC clone RP11-761I13 from 2, complete sequence
          Length = 100732

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    aaggagaaaagaaaataagaa 68
             |||||||||||||||||||||
Sbjct: 13937 aaggagaaaagaaaataagaa 13957
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>ref|NM_001025530.1| Danio rerio translocation protein 1 (tloc1), mRNA
          Length = 1335

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  tgctgtgctgcgatccttcgt 189
            |||||||||||||||||||||
Sbjct: 1140 tgctgtgctgcgatccttcgt 1120
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>gb|AC134615.5| Mus musculus BAC clone RP23-148H3 from 8, complete sequence
          Length = 199454

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 41     acaaaacaaggagaaaagaaaataagaaa 69
              |||||||||| ||||||||||| ||||||
Sbjct: 154480 acaaaacaagaagaaaagaaaagaagaaa 154452
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>gb|BC028496.1| Mus musculus sarcolipin, mRNA (cDNA clone MGC:41044 IMAGE:1397989),
           complete cds
          Length = 530

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 216 gaggagccagaagcagcatct 236
           |||||||||||||||||||||
Sbjct: 307 gaggagccagaagcagcatct 287
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     aaaacaaggagaaaagaaaa 62
              ||||||||||||||||||||
Sbjct: 274545 aaaacaaggagaaaagaaaa 274564
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>gb|AC103580.4| Trypanosoma brucei chromosome 4 clone RPCI93-5E12, complete sequence
          Length = 174832

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaaacaaggagaaaagaaaa 62
             ||||||||||||||||||||
Sbjct: 57350 aaaacaaggagaaaagaaaa 57331
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>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence
          Length = 187392

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaacaaggagaaaagaaaat 63
             ||||||||||||||||||||
Sbjct: 73977 aaacaaggagaaaagaaaat 73958
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>gb|AC155728.13| Mus musculus 6 BAC RP24-162H1 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176377

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    agaaaagaaaataagaaaag 71
             ||||||||||||||||||||
Sbjct: 73455 agaaaagaaaataagaaaag 73436
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>gb|AF040655.2| Caenorhabditis elegans cosmid T24E12, complete sequence
          Length = 34418

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gagaaaagaaaataagaaaa 70
             ||||||||||||||||||||
Sbjct: 19387 gagaaaagaaaataagaaaa 19406
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>ref|XM_823514.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.2990)
           partial mRNA
          Length = 339

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  caaaacaaggagaaaagaaa 61
           ||||||||||||||||||||
Sbjct: 223 caaaacaaggagaaaagaaa 242
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>gb|AC104096.5| Mus musculus BAC clone RP24-370O22 from chromosome 8, complete sequence
          Length = 160450

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gtttgtttgtttactatccc 279
             ||||||||||||||||||||
Sbjct: 67391 gtttgtttgtttactatccc 67372
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>gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, complete sequence
          Length = 198453

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   ggagaaaagaaaataagaaa 69
            ||||||||||||||||||||
Sbjct: 4729 ggagaaaagaaaataagaaa 4710
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>gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, complete sequence
          Length = 109222

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    agaaaagaaaataagaaaag 71
             ||||||||||||||||||||
Sbjct: 18373 agaaaagaaaataagaaaag 18392
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>gb|AC119242.5| Mus musculus chromosome 6, clone RP24-229C13, complete sequence
          Length = 189108

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaaacaaggagaaaagaaaa 62
             ||||||||||||||||||||
Sbjct: 32021 aaaacaaggagaaaagaaaa 32002
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>gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, complete sequence
          Length = 222348

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     agaaaagaaaataagaaaag 71
              ||||||||||||||||||||
Sbjct: 168248 agaaaagaaaataagaaaag 168229
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>gb|AC091514.2| Rattus norvegicus strain Brown Norway clone RP31-223K12, complete
            sequence
          Length = 148370

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   acaaggagaaaagaaaataa 65
            ||||||||||||||||||||
Sbjct: 7000 acaaggagaaaagaaaataa 7019
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>emb|AL109964.20|HS1118M15 Human DNA sequence from clone RP5-1118M15 on chromosome 20 Contains the
             3' end of the CTNNBL1 gene for catenin beta like 1, the
             C20orf102 gene for a novel Immunoglobulin
             domain-containing protein and a CpG Island, complete
             sequence
          Length = 95851

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    aaggagaaaagaaaataagaaaag 71
             ||||||||||||||| ||||||||
Sbjct: 24543 aaggagaaaagaaaaaaagaaaag 24520
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>emb|AL683819.19| Mouse DNA sequence from clone RP23-126J10 on chromosome 11 Contains
             part of the Car10 gene for carbonic anhydrase 10, complete
             sequence
          Length = 134741

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaaacaaggagaaaagaaaa 62
             ||||||||||||||||||||
Sbjct: 56077 aaaacaaggagaaaagaaaa 56058
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>emb|AL163832.1|ATF27K19 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19
          Length = 95111

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gagtcatcatctcgtgtgaa 136
             ||||||||||||||||||||
Sbjct: 19052 gagtcatcatctcgtgtgaa 19071
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>emb|AJ420748.2|HSA420748 Homo sapiens partial CPT1A gene for carnitine O-palmitoyltransferase 1,
             promoter region, CDS and slice variants a and b
          Length = 34753

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    agaaaagaaaataagaaaag 71
             ||||||||||||||||||||
Sbjct: 13305 agaaaagaaaataagaaaag 13286
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>emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on chromosome 4 Contains a
              novel gene and the 3' end of a novel gene, complete
              sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     gagaaaagaaaataagaaaa 70
              ||||||||||||||||||||
Sbjct: 176642 gagaaaagaaaataagaaaa 176661
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>emb|AL645757.13| Mouse DNA sequence from clone DN-340J1 on chromosome 3, complete sequence
          Length = 134040

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aaggagaaaagaaaataaga 67
              ||||||||||||||||||||
Sbjct: 128090 aaggagaaaagaaaataaga 128071
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>emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 129/Sv, complete sequence
          Length = 167508

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    agaaaagaaaataagaaaag 71
             ||||||||||||||||||||
Sbjct: 61996 agaaaagaaaataagaaaag 61977
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>gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, complete sequence
          Length = 172930

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     cacaaaacaaggagaaaaga 59
              ||||||||||||||||||||
Sbjct: 127037 cacaaaacaaggagaaaaga 127018
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>dbj|AK162689.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930023C24 product:hypothetical protein,
            full insert sequence
          Length = 4583

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  gtttgtttgtttactatccc 279
            ||||||||||||||||||||
Sbjct: 4513 gtttgtttgtttactatccc 4494
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>gb|AC016954.43| Homo sapiens 12 BAC RP11-956A19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190195

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     agaaaagaaaataagaaaag 71
              ||||||||||||||||||||
Sbjct: 177256 agaaaagaaaataagaaaag 177275
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>gb|AC154141.7| Mus musculus chromosome 7, clone RP24-343G19, complete sequence
          Length = 178391

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gtttgtttgtttactatccc 279
             ||||||||||||||||||||
Sbjct: 81389 gtttgtttgtttactatccc 81370
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>gb|AC152959.2| Mus musculus 6 BAC RP23-78B5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206857

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     aaaacaaggagaaaagaaaa 62
              ||||||||||||||||||||
Sbjct: 171171 aaaacaaggagaaaagaaaa 171152
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>gb|AC024259.17| Homo sapiens chromosome 7 clone RP11-105B19, complete sequence
          Length = 177303

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    ggagaaaagaaaataagaaa 69
             ||||||||||||||||||||
Sbjct: 95428 ggagaaaagaaaataagaaa 95447
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>gb|AC019179.4|AC019179 Homo sapiens BAC clone RP11-240A16 from 4, complete sequence
          Length = 196721

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aaggagaaaagaaaataaga 67
            ||||||||||||||||||||
Sbjct: 9760 aaggagaaaagaaaataaga 9779
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 53       gaaaagaaaataagaaaagg 72
                ||||||||||||||||||||
Sbjct: 35741241 gaaaagaaaataagaaaagg 35741260
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>gb|AC158528.1| Mus musculus BAC clone RP23-259G7 from chromosome 8, complete sequence
          Length = 180194

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    gtttgtttgtttactatccc 279
              ||||||||||||||||||||
Sbjct: 134572 gtttgtttgtttactatccc 134591
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>gb|AC117498.6| Homo sapiens 12 BAC RP11-579D7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 144383

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     gagaaaagaaaataagaaaa 70
              ||||||||||||||||||||
Sbjct: 131505 gagaaaagaaaataagaaaa 131486
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>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460C04
          Length = 189043

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gaaaagaaaataagaaaagg 72
              ||||||||||||||||||||
Sbjct: 144578 gaaaagaaaataagaaaagg 144597
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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0506B12
          Length = 170759

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   gaaaagaaaataagaaaagg 72
            ||||||||||||||||||||
Sbjct: 5699 gaaaagaaaataagaaaagg 5718
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>gb|AF245277.1|AF245277 Dictyostelium discoideum kinesin Unc104/KIF1a homolog (Unc104)
           mRNA, complete cds
          Length = 6925

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 43  aaaacaaggagaaaagaaaataagaaaa 70
           |||||||| |||||||||||||| ||||
Sbjct: 162 aaaacaagaagaaaagaaaataaaaaaa 189
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>dbj|AK000100.1| Homo sapiens cDNA FLJ20093 fis, clone COL04263
          Length = 2509

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 41   acaaaacaaggagaaaagaaaata 64
            |||||||||||| |||||||||||
Sbjct: 2197 acaaaacaaggaaaaaagaaaata 2174
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>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete
             sequence
          Length = 193132

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    agaaaagaaaataagaaaag 71
             ||||||||||||||||||||
Sbjct: 92089 agaaaagaaaataagaaaag 92108
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>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
              sequences
          Length = 195800

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aaaagaaaataagaaaaggc 73
              ||||||||||||||||||||
Sbjct: 168335 aaaagaaaataagaaaaggc 168316
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>emb|CT033754.8| Mouse DNA sequence from clone RP23-174E11 on chromosome 9, complete
             sequence
          Length = 165339

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 45    aacaaggagaaaagaaaataagaaaagg 72
             |||| |||||||||| ||||||||||||
Sbjct: 46783 aacagggagaaaagagaataagaaaagg 46810
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>gb|AC140369.2| Mus musculus BAC clone RP23-200L3 from 3, complete sequence
          Length = 191613

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   gtgctgtgctgcgatccttcgtgc 191
             ||||||||||| ||||||||||||
Sbjct: 74769 gtgctgtgctgagatccttcgtgc 74792
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>emb|CT030649.7| Mouse DNA sequence from clone RP24-354G13 on chromosome 16, complete
              sequence
          Length = 140452

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     agaaaagaaaataagaaaag 71
              ||||||||||||||||||||
Sbjct: 132386 agaaaagaaaataagaaaag 132405
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>dbj|AP006697.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT41M05, TM0404,
             complete sequence
          Length = 103744

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    acaaggagaaaagaaaataagaaa 69
             ||||| ||||||||||||||||||
Sbjct: 95852 acaagaagaaaagaaaataagaaa 95875
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>emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chromosome 2, complete
             sequence
          Length = 212364

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tatgtgagtatatacacaag 36
             ||||||||||||||||||||
Sbjct: 20363 tatgtgagtatatacacaag 20344
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>gb|M30949.1|ORARGIT Orangutan rRNA gene internal transcribed spacer 1 (ITS1)
          Length = 1070

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 187 cgtgcgtgcgtgcgtagcccggcc 210
           ||||||||||||||| ||||||||
Sbjct: 134 cgtgcgtgcgtgcgtcgcccggcc 157
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>emb|AL691436.7| Mouse DNA sequence from clone RP23-357M4 on chromosome 3, complete
             sequence
          Length = 66628

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    aaggagaaaagaaaataaga 67
             ||||||||||||||||||||
Sbjct: 41818 aaggagaaaagaaaataaga 41799
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>dbj|AB030754.1| Mus musculus prkdc gene for DNA-dependent protein kinase catalytic
             subunit, complete cds
          Length = 193650

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    agaaaagaaaataagaaaag 71
             ||||||||||||||||||||
Sbjct: 52628 agaaaagaaaataagaaaag 52609


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,843,216
Number of Sequences: 3902068
Number of extensions: 4843216
Number of successful extensions: 126018
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125794
Number of HSP's gapped (non-prelim): 224
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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