ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YV04_HUMAN (Q8TCH9) Protein FLJ23865 30 2.4
2GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC... 28 6.9

>YV04_HUMAN (Q8TCH9) Protein FLJ23865|
          Length = 128

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
 Frame = +1

Query: 319 WFCHHFCHELPPCY--------RDLA*MMAVSGCEI 402
           WFC+H CH+ PP +         +LA  +A S C +
Sbjct: 85  WFCNHHCHQHPPSHLTEVLQSSGELAHQLAPSRCSM 120



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>GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC cell-derived|
           growth factor) (PCDGF) [Contains: Acrogranin;
           Granulin-1; Granulin-2; Granulin-3; Granulin-4;
           Granulin-5; Granulin-6; Granulin-7]
          Length = 589

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 331 HFCHELPPCYRDLA*MMAVSGCEICCCYLQG 423
           HFCH+   C +D A      G   CC YL+G
Sbjct: 521 HFCHDNQTCCKDSA------GVWACCPYLKG 545


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,907,300
Number of Sequences: 219361
Number of extensions: 886010
Number of successful extensions: 1858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1858
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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