ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MD1L1_HUMAN (Q9Y6D9) Mitotic spindle assembly checkpoint protein... 28 5.2
2HAT1_ORYSA (Q6ES10) Probable acetyltransferase type B catalytic ... 28 6.8

>MD1L1_HUMAN (Q9Y6D9) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1) (Mitotic
           checkpoint MAD1 protein-homolog) (HsMAD1) (hMAD1)
           (Tax-binding protein 181)
          Length = 718

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 31  LEVQTKHGWGLLLVINKRKQDSIPSYFS 114
           LE +  H  G L+ ++ R+QDSIP++ S
Sbjct: 678 LETEFSHTVGELIEVHLRRQDSIPAFLS 705



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>HAT1_ORYSA (Q6ES10) Probable acetyltransferase type B catalytic subunit (EC|
           2.3.1.48) (HAT B)
          Length = 466

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 43  TKHGWGLLLVINKRKQDSIPSYF 111
           T+HGW +LLV+ K  Q S  S F
Sbjct: 193 TEHGWEMLLVVKKSAQASSSSNF 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,196,929
Number of Sequences: 219361
Number of extensions: 234651
Number of successful extensions: 318
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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