>GUAA_PROM9 (Q31DE7) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 531 RLWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLNEAVELDDRNEQIDALLE 352
           +L++DE  KLG A    D++     +HP P  G+A R L ++N        NE++D L +
Sbjct: 381 KLFKDEVRKLGAALGLPDEIIK---RHPFPGPGLAIRILGEVN--------NEKLDCLRD 429

Query: 351 ND 346
            D
Sbjct: 430 AD 431

>GUAA_PROMM (Q7V9A9) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 531 RLWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLNE 400
           RL++DE  K+G A    +++     +HP P  G+A R L ++N+
Sbjct: 381 RLFKDEVRKVGRALGLPEEIVR---RHPFPGPGLAIRILDEVND 421

>GUAA_PROMP (Q7V3N7) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 531 RLWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLN 403
           +L++DE  K+G A    D++     +HP P  G+A R L D++
Sbjct: 381 KLFKDEVRKVGGALGLPDEIIK---RHPFPGPGLAIRILGDVS 420

>CPCE_PSEA9 (Q52448) Phycocyanobilin lyase alpha subunit (EC 4.-.-.-)|
           (Phycocyanin-1 operon protein cpcE)
          Length = 271

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 453 HPLPSTGMAA-RALYDLNEAVELDDRNEQIDALLENDVDDRTRSPVMPPQPPVG 295
           HP+P    AA RA+Y L+E +  D   +++ A L ND D + R  V+     +G
Sbjct: 166 HPIPKVQYAAARAMYQLSEPMVADQYGDRLVAALAND-DLQLRRTVLSDLGAIG 218

>RPOB_DESPS (Q6AP78) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1360

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -3

Query: 483  ADQVKDSSVKHPLPSTGMAARALYDLNEAVELDDRNEQIDAL----LENDVDDRTRS 325
            A  VKDSS++ P   TG+   A     + V+ D+R+  I+ L    LE D  D  RS
Sbjct: 912  AQDVKDSSLRVPPGVTGVVIDAKVFSRKGVDKDERSLMIEDLEIERLEGDKRDELRS 968

>RL10_NEIMB (P66047) 50S ribosomal protein L10|
          Length = 166

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 280 AVRGPRRGSVCGRISGAPSWIMINDAMVAASVIHQFACGSSKTVISISVY 131
           AV+G     +  ++ G   +    DA+ AA V+HQFA    K V+    Y
Sbjct: 63  AVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKDDKIVVKAGSY 112

>RL10_NEIMA (P66046) 50S ribosomal protein L10|
          Length = 166

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 280 AVRGPRRGSVCGRISGAPSWIMINDAMVAASVIHQFACGSSKTVISISVY 131
           AV+G     +  ++ G   +    DA+ AA V+HQFA    K V+    Y
Sbjct: 63  AVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKDDKIVVKAGSY 112

>GUAA_THIDN (Q30TH8) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 516

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 528 LWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLNEA 397
           L++DE  K+G      + + +   +HP P  G+A R + D+NEA
Sbjct: 370 LFKDEVRKIGLELGLPESMIN---RHPFPGPGLAIRIMGDVNEA 410

>YL006_MIMIV (Q5UP81) Hypothetical protein L6|
          Length = 218

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 72  PIYISNR*IYYAKNTKDATLYTE 140
           PI+I N+ IYYAKN  D   Y +
Sbjct: 168 PIFIGNKVIYYAKNNSDRDKYMD 190

>ABLM2_RAT (Q6KC51) Actin-binding LIM protein 2 (Actin-binding LIM protein|
           family member 2) (abLIM2)
          Length = 612

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 474 VKDSSVKHPLPSTGMAARALYDLNEAVELDDRNEQIDALLENDVDDRTRSPVMPPQ 307
           VKD+  + P      AAR L   + + + D R +    LL+ D D RT SP +  Q
Sbjct: 428 VKDNIYRKPPIYKQHAARRLDVEDSSFDQDSRKKTTWLLLKGDADTRTNSPDLDSQ 483

>ABLM2_MOUSE (Q8BL65) Actin-binding LIM protein 2 (Actin-binding LIM protein|
           family member 2) (abLIM2)
          Length = 612

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 474 VKDSSVKHPLPSTGMAARALYDLNEAVELDDRNEQIDALLENDVDDRTRSPVMPPQ 307
           VKD+  + P      AAR L   + + + D R +    LL+ D D RT SP +  Q
Sbjct: 428 VKDNIYRKPPIYKQHAARRLDVEDSSFDQDSRKKTTWLLLKGDADTRTNSPDLDSQ 483

>BMP3B_RAT (P55108) Bone morphogenetic protein 3b precursor (BMP-3b)|
           (Growth/differentiation factor 10) (GDF-10)
           (Bone-inducing protein) (BIP)
          Length = 476

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 366 LSVRFYHPVQLPR*GRIRHEQPCQWRAKGASLKNLSPGLQKRQH 497
           L+  F+   + PR  R R E  C+ RAK AS + L+PGL  R H
Sbjct: 125 LTATFHFYSEPPRWPRAR-EVFCKPRAKNASCRLLTPGLPARLH 167

>GUAA_THEMA (Q9X2E0) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 501

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 528 LWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLNEAVELDDRNEQIDALLEN 349
           L++DE  K+G      D++ +   +HP P  G+A R L ++ E        E+++ L E 
Sbjct: 355 LFKDEVRKVGKYLGIPDRIIN---RHPFPGPGLAVRVLGEVTE--------EKLEILREA 403

Query: 348 D 346
           D
Sbjct: 404 D 404

>CCD71_HUMAN (Q8IV32) Coiled-coil domain-containing protein 71|
          Length = 467

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
 Frame = -2

Query: 310 TTSSGPKCLCAV---RGPRRG----SVCGRISGAPS 224
           TTS GPKCL       GPRRG    S   R +G+PS
Sbjct: 231 TTSKGPKCLTRKGPGAGPRRGSGHQSKTNRATGSPS 266

>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, mitochondrial|
           precursor (EC 3.6.1.-) (ATP-dependent helicase pif1)
          Length = 805

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
 Frame = -3

Query: 507 KLGNAASSADQVKDSSV-----KHPLP---STGMAARALYDLNEAVELDDRNEQIDALLE 352
           K G +A+S  Q+ D++V     K  LP   ++G+ ++   ++   V +D+ +   D LLE
Sbjct: 88  KRGRSAASLKQL-DNTVGFDVSKPSLPVFENSGLGSKYSTEIANGVYIDENDFDDDLLLE 146

Query: 351 NDVDDR 334
           ND+D +
Sbjct: 147 NDIDQK 152

>GUAA_LACLC (Q9Z6H4) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 513

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 528 LWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLNEAVELDDRNEQIDALLEN 349
           L++DE   LG      D++     + P P  G+A R L DL E  E  +   + DA+L  
Sbjct: 367 LFKDEVRALGTQLGMPDEIV---WRQPFPGPGLAIRVLGDLTE--EKLETVRESDAILRE 421

Query: 348 DV 343
           ++
Sbjct: 422 EI 423

>GUAA_LACLA (Q9CFJ0) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 513

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 528 LWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLNEAVELDDRNEQIDALLEN 349
           L++DE   LG      D++     + P P  G+A R L DL E  E  +   + DA+L  
Sbjct: 367 LFKDEVRALGTQLGMPDEIV---WRQPFPGPGLAIRVLGDLTE--EKLETVRESDAILRE 421

Query: 348 DV 343
           ++
Sbjct: 422 EI 423

>GUAA_HELPJ (Q9ZKG4) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 508

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 528 LWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARALYDLNE 400
           L++DE   LG     +   +D  ++HP P  G+A R L ++NE
Sbjct: 362 LFKDEVRLLGKELGVS---QDFLMRHPFPGPGLAIRILGEINE 401

>RL10_NEIG1 (Q5F5R3) 50S ribosomal protein L10|
          Length = 166

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 280 AVRGPRRGSVCGRISGAPSWIMINDAMVAASVIHQFACGSSKTVISISVY 131
           AV+G     +  ++ G   +    DA+ AA V+HQFA    K V+    Y
Sbjct: 63  AVQGTSFVELADQMVGPLVYAASEDAVAAAKVLHQFAKKDDKIVVKAGSY 112

>GUAA_PROMT (Q46I26) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 531 RLWEDERNKLGNAASSADQVKDSSVKHPLPSTGMAARAL 415
           RL++DE  K+G +    D++     +HP P  G+A R L
Sbjct: 381 RLFKDEVRKVGKSLGLPDEIVR---RHPFPGPGLAIRIL 416


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,107,796
Number of Sequences: 219361
Number of extensions: 1485004
Number of successful extensions: 4195
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4194
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)