ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart43a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_506722.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.002
2ref|XM_464188.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
6dbj|AB117992.1| Oryza sativa (japonica cultivar-group) bip105 mR... 52 0.002
7dbj|AK122103.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
8dbj|AK065198.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
9gb|AY104173.1| Zea mays PCO137268 mRNA sequence 48 0.030
10gb|AC129851.5| Homo sapiens X BAC RP11-669P14 (Roswell Park Canc... 44 0.46
11gb|AC161887.5| Mus musculus 6 BAC RP23-75P5 (Roswell Park Cancer... 44 0.46
12gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Canc... 44 0.46
13emb|AL136166.6| Human DNA sequence from clone RP11-36B23 on chro... 42 1.8
14emb|AL023773.1|HS406C18 Human DNA sequence from clone RP3-406C18... 42 1.8
15emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chrom... 42 1.8
16gb|AC114748.4| Homo sapiens BAC clone RP11-164A18 from 2, comple... 42 1.8
17emb|CR352296.12| Zebrafish DNA sequence from clone DKEYP-34A4 in... 42 1.8
18emb|BX927123.8| Zebrafish DNA sequence from clone CH211-278N15 i... 42 1.8
19emb|AL626762.10| Mouse DNA sequence from clone RP23-68F3 on chro... 42 1.8
20emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chro... 42 1.8
21gb|AC153729.1| Mus musculus BAC RP23-88C11 (Roswell Park Cancer... 40 7.2
22gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 40 7.2
23gb|AC005608.1| Homo sapiens chromosome 5, PAC clone 53L17 (LBNL ... 40 7.2
24gb|AE007254.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 7.2
25emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 7.2
26gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosom... 40 7.2
27emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chr... 40 7.2
28emb|AL442646.14| Human DNA sequence from clone RP11-322A17 on ch... 40 7.2
29emb|AL109754.13|HSDJ839B4 Human DNA sequence from clone RP5-839B... 40 7.2
30emb|Z21854.1|RMFIXRME R.meliloti fixG, fixH, fixI, fixJ, fixK, f... 40 7.2
31emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 7.2
32gb|AC163742.4| Mus musculus BAC clone RP23-383K19 from chromosom... 40 7.2
33emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chrom... 40 7.2
34emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2 40 7.2
35gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosom... 40 7.2
36gb|AC018918.15| Homo sapiens 3 BAC RP11-81D17 (Roswell Park Canc... 40 7.2
37gb|AC119037.6| Homo sapiens 3 BAC RP11-495D2 (Roswell Park Cance... 40 7.2
38gb|AC109448.3| Homo sapiens chromosome 5 clone RP11-141G2, compl... 40 7.2
39gb|AC108121.2| Homo sapiens chromosome 5 clone RP11-553D6, compl... 40 7.2
40gb|AC155936.7| Mus musculus 10 BAC RP24-397C20 (Roswell Park Can... 40 7.2
41gb|AC152946.1| Mus musculus 10 BAC RP23-40N7 (Roswell Park Cance... 40 7.2
42gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Canc... 40 7.2
43gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete... 40 7.2
44gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complet... 40 7.2
45gb|AC024166.3|AC024166 Homo sapiens chromosome 3 clone RP11-429F... 40 7.2
46gb|AC023055.40| Homo sapiens 12 BAC RP11-670P16 (Roswell Park Ca... 40 7.2
47gb|AC025162.48| Homo sapiens 12 BAC RP11-973D8 (Roswell Park Can... 40 7.2
48gb|AC083855.3| Homo sapiens chromosome 3 clone RP11-622I12 map 3... 40 7.2
49emb|BX120016.12| Zebrafish DNA sequence from clone CH211-232H16 ... 40 7.2
50gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, com... 40 7.2
51dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 7.2
52gb|AC125525.3| Mus musculus BAC clone RP24-395H10 from 1, comple... 40 7.2
53gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 7.2
54gb|AC136957.1| Homo sapiens chromosome X clone RP11-477H13 map q... 40 7.2
55gb|AC109994.2| Homo sapiens chromosome X clone CTD-2537J14 map q... 40 7.2
56dbj|AB020871.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 40 7.2

>ref|XM_506722.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ9003_G05.19 mRNA
          Length = 1679

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 423  gagcagccatgccagtggagggcaaa 448
            ||||||||||||||||||||||||||
Sbjct: 1202 gagcagccatgccagtggagggcaaa 1177



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>ref|XM_464188.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1612

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 423  gagcagccatgccagtggagggcaaa 448
            ||||||||||||||||||||||||||
Sbjct: 1204 gagcagccatgccagtggagggcaaa 1179



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 423     gagcagccatgccagtggagggcaaa 448
               ||||||||||||||||||||||||||
Sbjct: 3303187 gagcagccatgccagtggagggcaaa 3303162



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>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1103G11
          Length = 182931

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 423    gagcagccatgccagtggagggcaaa 448
              ||||||||||||||||||||||||||
Sbjct: 175374 gagcagccatgccagtggagggcaaa 175349



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>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ9003_G05
          Length = 141860

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 423   gagcagccatgccagtggagggcaaa 448
             ||||||||||||||||||||||||||
Sbjct: 52047 gagcagccatgccagtggagggcaaa 52022



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>dbj|AB117992.1| Oryza sativa (japonica cultivar-group) bip105 mRNA for BRI1-KD
           interacting protein 105, partial cds
          Length = 1070

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 423 gagcagccatgccagtggagggcaaa 448
           ||||||||||||||||||||||||||
Sbjct: 653 gagcagccatgccagtggagggcaaa 628



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>dbj|AK122103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125O22, full
            insert sequence
          Length = 1679

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 423  gagcagccatgccagtggagggcaaa 448
            ||||||||||||||||||||||||||
Sbjct: 1202 gagcagccatgccagtggagggcaaa 1177



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>dbj|AK065198.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E19, full
            insert sequence
          Length = 1612

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 423  gagcagccatgccagtggagggcaaa 448
            ||||||||||||||||||||||||||
Sbjct: 1204 gagcagccatgccagtggagggcaaa 1179



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>gb|AY104173.1| Zea mays PCO137268 mRNA sequence
          Length = 1066

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 306 gttgtgggggcataacaggcgatctagt 333
           |||||||||||||||||||||| |||||
Sbjct: 759 gttgtgggggcataacaggcgacctagt 732



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 423 gagcagccatgccagtggagggcaaa 448
           |||||||||| |||||||||||||||
Sbjct: 651 gagcagccataccagtggagggcaaa 626



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>gb|AC129851.5| Homo sapiens X BAC RP11-669P14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166653

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 75    atatatatatcaaatagatagatata 100
             |||||||||| |||||||||||||||
Sbjct: 53268 atatatatataaaatagatagatata 53293



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>gb|AC161887.5| Mus musculus 6 BAC RP23-75P5 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 227751

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 38   aagaggaggattctgagtaaaa 59
            ||||||||||||||||||||||
Sbjct: 4185 aagaggaggattctgagtaaaa 4206



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>gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 191856

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 38    aagaggaggattctgagtaaaa 59
             ||||||||||||||||||||||
Sbjct: 72449 aagaggaggattctgagtaaaa 72470



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>emb|AL136166.6| Human DNA sequence from clone RP11-36B23 on chromosome X Contains part
             of a novel gene, complete sequence
          Length = 102105

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    ctaaaaacacccaatatatat 82
             |||||||||||||||||||||
Sbjct: 78797 ctaaaaacacccaatatatat 78777



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>emb|AL023773.1|HS406C18 Human DNA sequence from clone RP3-406C18 on chromosome Xq27.1-27.3
             Contains two MAGE (Melanoma Associated Antigen) family
             pseudogenes, complete sequence
          Length = 116210

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    tatatcaaatagatagatata 100
             |||||||||||||||||||||
Sbjct: 28251 tatatcaaatagatagatata 28231



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>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4
          Length = 343050

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 74    aatatatatatcaaatagatagatatatt 102
             ||||||||||| | |||||||||||||||
Sbjct: 18493 aatatatatattatatagatagatatatt 18521



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>gb|AC114748.4| Homo sapiens BAC clone RP11-164A18 from 2, complete sequence
          Length = 127561

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 74    aatatatatatcaaatagatagatatatt 102
             ||||||||||||||||| ||| |||||||
Sbjct: 60973 aatatatatatcaaatatatatatatatt 60945



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>emb|CR352296.12| Zebrafish DNA sequence from clone DKEYP-34A4 in linkage group 20,
             complete sequence
          Length = 23148

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 73    caatatatatatcaaatagatagatatat 101
             |||||||||||||||||| ||| ||||||
Sbjct: 21198 caatatatatatcaaatatatatatatat 21226



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>emb|BX927123.8| Zebrafish DNA sequence from clone CH211-278N15 in linkage group 20,
              complete sequence
          Length = 121145

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 73     caatatatatatcaaatagatagatatat 101
              |||||||||||||||||| ||| ||||||
Sbjct: 121096 caatatatatatcaaatatatatatatat 121068



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>emb|AL626762.10| Mouse DNA sequence from clone RP23-68F3 on chromosome 4, complete
              sequence
          Length = 228767

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     aaaaacacccaatatatatat 84
              |||||||||||||||||||||
Sbjct: 180819 aaaaacacccaatatatatat 180839



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>emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chromosome X, complete
              sequence
          Length = 225435

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 487    agaggcagcatttccaagctt 507
              |||||||||||||||||||||
Sbjct: 109219 agaggcagcatttccaagctt 109199



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>gb|AC153729.1| Mus musculus  BAC RP23-88C11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 250801

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   ttcatcttcccagagtctct 533
             ||||||||||||||||||||
Sbjct: 79808 ttcatcttcccagagtctct 79827



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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 64     aaaaacacccaatatatatatcaa 87
              ||||||||||||||||| ||||||
Sbjct: 832610 aaaaacacccaatatatctatcaa 832587



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>gb|AC005608.1| Homo sapiens chromosome 5, PAC clone 53L17 (LBNL H152), complete
            sequence
          Length = 119298

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   gctaaaaacacccaatatat 80
            ||||||||||||||||||||
Sbjct: 2380 gctaaaaacacccaatatat 2361



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>gb|AE007254.1| Sinorhizobium meliloti 1021 plasmid pSymA section 60 of 121 of the
            complete plasmid sequence
          Length = 12672

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 261  cgtcgaggtcctcgtactgc 280
            ||||||||||||||||||||
Sbjct: 8082 cgtcgaggtcctcgtactgc 8101



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>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
             complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    taaaaacacccaatatatat 82
             ||||||||||||||||||||
Sbjct: 16835 taaaaacacccaatatatat 16816



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>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    tctgagtaaaaggctaaaaa 68
             ||||||||||||||||||||
Sbjct: 21663 tctgagtaaaaggctaaaaa 21644



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>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete
             sequence
          Length = 175726

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 74    aatatatatatcaaatagatagatatat 101
             ||||||||||||||||| ||| ||||||
Sbjct: 44752 aatatatatatcaaatatataaatatat 44725



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>emb|AL442646.14| Human DNA sequence from clone RP11-322A17 on chromosome X Contains a
              novel pseudogene and a lactate dehydrogenase B pseudogene,
              complete sequence
          Length = 155885

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 74     aatatatatatcaaatagatagatatat 101
              ||||||||||||||||| ||| ||||||
Sbjct: 100806 aatatatatatcaaatatatatatatat 100833



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>emb|AL109754.13|HSDJ839B4 Human DNA sequence from clone RP5-839B4 on chromosome 20 Contains the 3'
              end of a novel gene, part of a novel gene, the ANKRD5 gene
              for ankyrin repeat domain 5 and a CpG island, complete
              sequence
          Length = 165010

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    aggcactttggcccactgga 304
              ||||||||||||||||||||
Sbjct: 113689 aggcactttggcccactgga 113670



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>emb|Z21854.1|RMFIXRME R.meliloti fixG, fixH, fixI, fixJ, fixK, fixL, fixN, fixO, fixJ, fixP,
             fixQ, fixS and fixT1 genes
          Length = 13533

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   cgtcgaggtcctcgtactgc 280
             ||||||||||||||||||||
Sbjct: 13047 cgtcgaggtcctcgtactgc 13028



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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 73      caatatatatatcaaatagatagatata 100
               |||||| ||||| |||||||||||||||
Sbjct: 1333935 caatatgtatatgaaatagatagatata 1333908



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>gb|AC163742.4| Mus musculus BAC clone RP23-383K19 from chromosome 14, complete
             sequence
          Length = 199109

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    atatatatatcaaatagatagata 98
             |||||||||| |||||||||||||
Sbjct: 17862 atatatatataaaatagatagata 17885



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>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4
          Length = 347050

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     tatatatatcaaatagatagatat 99
              ||||||||||||||| ||||||||
Sbjct: 197826 tatatatatcaaatatatagatat 197803



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>emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2
          Length = 234081

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 75   atatatatatcaaatagatagatatatt 102
            |||||||||| |||||||||||||||||
Sbjct: 9658 atatatatat-aaatagatagatatatt 9684



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>gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosome 14, complete
             sequence
          Length = 206110

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    atatatatatcaaatagatagata 98
             |||||||||| |||||||||||||
Sbjct: 71543 atatatatataaaatagatagata 71520



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>gb|AC018918.15| Homo sapiens 3 BAC RP11-81D17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 58150

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    atatatatatcaaatagatagata 98
             |||||||||||| |||||||||||
Sbjct: 42171 atatatatatcatatagatagata 42148



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>gb|AC119037.6| Homo sapiens 3 BAC RP11-495D2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 200182

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    atatatatatcaaatagatagata 98
             |||||||||||| |||||||||||
Sbjct: 22455 atatatatatcatatagatagata 22432



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>gb|AC109448.3| Homo sapiens chromosome 5 clone RP11-141G2, complete sequence
          Length = 163817

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   gctaaaaacacccaatatat 80
            ||||||||||||||||||||
Sbjct: 1293 gctaaaaacacccaatatat 1274



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>gb|AC108121.2| Homo sapiens chromosome 5 clone RP11-553D6, complete sequence
          Length = 148288

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gctaaaaacacccaatatat 80
             ||||||||||||||||||||
Sbjct: 17297 gctaaaaacacccaatatat 17316



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>gb|AC155936.7| Mus musculus 10 BAC RP24-397C20 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 177791

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 86    aaatagatagatatattatgctaaaaac 113
             |||||||||||||| ||| |||||||||
Sbjct: 23972 aaatagatagatattttaagctaaaaac 23999



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>gb|AC152946.1| Mus musculus 10 BAC RP23-40N7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 224018

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 86    aaatagatagatatattatgctaaaaac 113
             |||||||||||||| ||| |||||||||
Sbjct: 16674 aaatagatagatattttaagctaaaaac 16647



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>gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 209599

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 514   ttcatcttcccagagtctct 533
             ||||||||||||||||||||
Sbjct: 60514 ttcatcttcccagagtctct 60495



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>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 74     aatatatatatcaaatagatagatatat 101
              ||||||||||| | ||||||||||||||
Sbjct: 133757 aatatatatataagatagatagatatat 133730



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>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence
          Length = 132623

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 74    aatatatatatcaaatagatagatatat 101
             ||||||||||| | ||||||||||||||
Sbjct: 83983 aatatatatataagatagatagatatat 83956



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>gb|AC024166.3|AC024166 Homo sapiens chromosome 3 clone RP11-429F16 map 3p, complete sequence
          Length = 174868

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   cagcatttccaagcttattc 511
             ||||||||||||||||||||
Sbjct: 87504 cagcatttccaagcttattc 87485



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>gb|AC023055.40| Homo sapiens 12 BAC RP11-670P16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 118052

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 74     aatatatatatcaaatagatagatatat 101
              |||||||||||| |||||||| ||||||
Sbjct: 118036 aatatatatatctaatagatatatatat 118009



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>gb|AC025162.48| Homo sapiens 12 BAC RP11-973D8 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 67199

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 74   aatatatatatcaaatagatagatatat 101
            |||||||||||| |||||||| ||||||
Sbjct: 1990 aatatatatatctaatagatatatatat 1963



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>gb|AC083855.3| Homo sapiens chromosome 3 clone RP11-622I12 map 3p, complete sequence
          Length = 190861

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   cagcatttccaagcttattc 511
             ||||||||||||||||||||
Sbjct: 71314 cagcatttccaagcttattc 71295



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>emb|BX120016.12| Zebrafish DNA sequence from clone CH211-232H16 in linkage group 2,
            complete sequence
          Length = 158139

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 493  agcatttccaagcttattcc 512
            ||||||||||||||||||||
Sbjct: 6236 agcatttccaagcttattcc 6217



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>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence
          Length = 147102

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    tatatatatcaaatagatagatat 99
             ||||| ||||||||||||||||||
Sbjct: 67310 tatatctatcaaatagatagatat 67333



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>dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-361G14, complete
             sequence
          Length = 189176

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 74    aatatatatatcaaatagatagatatat 101
             ||||||||||||||||| ||| ||||||
Sbjct: 73353 aatatatatatcaaatatataaatatat 73326



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>gb|AC125525.3| Mus musculus BAC clone RP24-395H10 from 1, complete sequence
          Length = 195904

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tctgagtaaaaggctaaaaa 68
             ||||||||||||||||||||
Sbjct: 20829 tctgagtaaaaggctaaaaa 20848



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>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     tctgagtaaaaggctaaaaa 68
              ||||||||||||||||||||
Sbjct: 107486 tctgagtaaaaggctaaaaa 107467



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>gb|AC136957.1| Homo sapiens chromosome X clone RP11-477H13 map q28, complete sequence
          Length = 166719

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 75     atatatatatcaaatagatagatatatt 102
              |||||||||||||||| ||| |||||||
Sbjct: 136549 atatatatatcaaatatatatatatatt 136522



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>gb|AC109994.2| Homo sapiens chromosome X clone CTD-2537J14 map q28, complete sequence
          Length = 198434

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 75     atatatatatcaaatagatagatatatt 102
              |||||||||||||||| ||| |||||||
Sbjct: 140830 atatatatatcaaatatatatatatatt 140803



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>dbj|AB020871.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 3/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 74    aatatatatatcaaatagatagatatat 101
             ||||||||||||||||| ||| ||||||
Sbjct: 94570 aatatatatatcaaatatataaatatat 94543


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,774,304
Number of Sequences: 3902068
Number of extensions: 5774304
Number of successful extensions: 95846
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95620
Number of HSP's gapped (non-prelim): 227
length of query: 533
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 510
effective length of database: 17,143,297,704
effective search space: 8743081829040
effective search space used: 8743081829040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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