Clone Name | rbart42h11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK119619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H01, full insert sequence Length = 1198 Score = 313 bits (158), Expect = 3e-82 Identities = 254/286 (88%) Strand = Plus / Minus Query: 178 cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 237 |||||| || |||||| ||| |||||||||||| || ||||| ||||| | | ||||| Sbjct: 1074 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1015 Query: 238 tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 297 | ||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct: 1014 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 955 Query: 298 tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 357 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 954 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 895 Query: 358 tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 417 ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| | Sbjct: 894 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 835 Query: 418 ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 834 ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtaga 789
>dbj|AK104751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F06, full insert sequence Length = 1187 Score = 313 bits (158), Expect = 3e-82 Identities = 254/286 (88%) Strand = Plus / Minus Query: 178 cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 237 |||||| || |||||| ||| |||||||||||| || ||||| ||||| | | ||||| Sbjct: 1063 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1004 Query: 238 tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 297 | ||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct: 1003 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 944 Query: 298 tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 357 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 943 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 884 Query: 358 tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 417 ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| | Sbjct: 883 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 824 Query: 418 ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 823 ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtaga 778
>dbj|AK104621.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G08, full insert sequence Length = 1187 Score = 313 bits (158), Expect = 3e-82 Identities = 254/286 (88%) Strand = Plus / Minus Query: 178 cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 237 |||||| || |||||| ||| |||||||||||| || ||||| ||||| | | ||||| Sbjct: 1063 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1004 Query: 238 tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 297 | ||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct: 1003 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 944 Query: 298 tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 357 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 943 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 884 Query: 358 tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 417 ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| | Sbjct: 883 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 824 Query: 418 ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 823 ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtaga 778
>dbj|AK070684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062L13, full insert sequence Length = 1399 Score = 313 bits (158), Expect = 3e-82 Identities = 254/286 (88%) Strand = Plus / Minus Query: 178 cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 237 |||||| || |||||| ||| |||||||||||| || ||||| ||||| | | ||||| Sbjct: 1088 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 1029 Query: 238 tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 297 | ||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct: 1028 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 969 Query: 298 tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 357 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 968 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 909 Query: 358 tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgttt 417 ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| | Sbjct: 908 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgtct 849 Query: 418 ctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 848 ctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtaga 803
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 234 bits (118), Expect = 2e-58 Identities = 208/238 (87%) Strand = Plus / Minus Query: 178 cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 237 |||||| || |||||| ||| |||||||||||| || ||||| ||||| | | ||||| Sbjct: 7294468 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 7294409 Query: 238 tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 297 | ||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct: 7294408 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 7294349 Query: 298 tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 357 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 7294348 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 7294289 Query: 358 tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgt 415 ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct: 7294288 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgt 7294231 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 |||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 7294117 ctgtctctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtaga 7294066
>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060E18, from chromosome 3, complete sequence Length = 147983 Score = 234 bits (118), Expect = 2e-58 Identities = 208/238 (87%) Strand = Plus / Minus Query: 178 cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 237 |||||| || |||||| ||| |||||||||||| || ||||| ||||| | | ||||| Sbjct: 45724 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 45665 Query: 238 tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 297 | ||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct: 45664 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 45605 Query: 298 tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 357 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 45604 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 45545 Query: 358 tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgt 415 ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct: 45544 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgt 45487 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 |||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 45373 ctgtctctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtaga 45322
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 234 bits (118), Expect = 2e-58 Identities = 208/238 (87%) Strand = Plus / Minus Query: 178 cctcattctgcagtgacataaatggagggctggaagtggtttgttttgcgcgaggtccac 237 |||||| || |||||| ||| |||||||||||| || ||||| ||||| | | ||||| Sbjct: 7292363 cctcatgcttcagtgatataggtggagggctggaggtagtttgctttgctcttgctccac 7292304 Query: 238 tcatacaagactttaccagaaacatcataaaagatgaagtcagcttggtccttgtttagc 297 | ||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct: 7292303 ttgtacaagatgttcccagaaacatcataaaatatgaagtcagcttggtcctggtttatc 7292244 Query: 298 tggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctgg 357 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 7292243 tggagggacatgaacccttgtccatcgtaaaagaactggagcttatcagaatttggctgc 7292184 Query: 358 tagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggactgt 415 ||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct: 7292183 aagactcctctccatgcttttgaaccacctccacttgtgaagtattggataggactgt 7292126 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 |||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 7292012 ctgtctctgctgctaatgtgttccaggcagtggtcgtgcccattgatgtaga 7291961
>dbj|AK073387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043K11, full insert sequence Length = 2343 Score = 222 bits (112), Expect = 8e-55 Identities = 190/216 (87%) Strand = Plus / Plus Query: 200 tggagggctggaagtggtttgttttgcgcgaggtccactcatacaagactttaccagaaa 259 |||||||||||| || ||||| ||||| | | |||||| ||||||| || ||||||| Sbjct: 1633 tggagggctggaggtagtttgctttgctcttgctccacttgtacaagatgttcccagaaa 1692 Query: 260 catcataaaagatgaagtcagcttggtccttgtttagctggagggacatgaacccttgcc 319 ||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||| | Sbjct: 1693 catcacaaaatatgaagtcagcttggtcctggtttatctggagggacatgaacccttgtc 1752 Query: 320 catcataaaagaactggagcttatcatcatttggctggtagactcccctccatgcttttg 379 |||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct: 1753 catcgtaaaagaactggagcttatcagaatttggctgcaagactcctctccatgcttttg 1812 Query: 380 aaccgcctccactagtgaagtattggattggactgt 415 |||| |||||||| |||||||||||||| ||||||| Sbjct: 1813 aaccacctccacttgtgaagtattggataggactgt 1848 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 435 caggcagtggtcatgcccattgatgtaga 463 |||||||||||| |||||||||||||||| Sbjct: 1870 caggcagtggtcgtgcccattgatgtaga 1898
>ref|NM_194612.1| Oryza sativa (japonica cultivar-group) putative purple acid phosphatase (OSJNBa0023I19.10), mRNA Length = 1008 Score = 151 bits (76), Expect = 2e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 304 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 363 |||| ||||||||| |||||||| |||||||||||||| || || ||| | || | | Sbjct: 878 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 819 Query: 364 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactgtttctgctg 423 || |||||||| ||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct: 818 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactgtttctgctg 759 Query: 424 ctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 || ||||| ||||||||||| ||||||||||||||||||| Sbjct: 758 ctgatgtgctccaggcagtgatcatgcccattgatgtaga 719
>dbj|AK110804.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-E10, full insert sequence Length = 1195 Score = 151 bits (76), Expect = 2e-33 Identities = 139/160 (86%) Strand = Plus / Minus Query: 304 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 363 |||| ||||||||| |||||||| |||||||||||||| || || ||| | || | | Sbjct: 885 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 826 Query: 364 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactgtttctgctg 423 || |||||||| ||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct: 825 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactgtttctgctg 766 Query: 424 ctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 || ||||| ||||||||||| ||||||||||||||||||| Sbjct: 765 ctgatgtgctccaggcagtgatcatgcccattgatgtaga 726
>gb|AY108108.1| Zea mays PCO072542 mRNA sequence Length = 1591 Score = 149 bits (75), Expect = 9e-33 Identities = 168/199 (84%) Strand = Plus / Minus Query: 265 taaaagatgaagtcagcttggtccttgtttagctggagggacatgaacccttgcccatca 324 |||||||| |||| ||| ||||| | ||| |||||||||||||||||||||||||| || Sbjct: 1214 taaaagataaagtgagcctggtcttggttcagctggagggacatgaacccttgcccgtcg 1155 Query: 325 taaaagaactggagcttatcatcatttggctggtagactcccctccatgcttttgaaccg 384 || ||||| ||||||| || | ||||| ||| ||||||| |||||||| || |||||| Sbjct: 1154 tagaagaatcggagcttgtccttgtttggatggaagactcctctccatgccttggaaccg 1095 Query: 385 cctccactagtgaagtattggattggactgtttctgctgctaatgtgttccaggcagtgg 444 ||||| || ||||| || |||| |||||||| ||||||||||||||| ||||| ||||| Sbjct: 1094 cctccgctcgtgaaatactggagtggactgtctctgctgctaatgtgctccagacagtga 1035 Query: 445 tcatgcccattgatgtaga 463 || || ||||||||||||| Sbjct: 1034 tcgtgtccattgatgtaga 1016
>gb|AY108047.1| Zea mays PCO103710 mRNA sequence Length = 1513 Score = 131 bits (66), Expect = 2e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 294 tagctggagggacatgaacccttgcccatcataaaagaactggagcttatcatcatttgg 353 |||||||||||||||||| |||||||| || || ||||||| ||| | ||| || | || Sbjct: 1039 tagctggagggacatgaagccttgcccgtcgtagaagaacttgaggtcatcttcggtggg 980 Query: 354 ctggtagactcccctccatgcttttgaaccgcctccactagtgaagtattggattggact 413 | | ||||| |||||||| || ||||||||||| || |||||||| |||||||| || Sbjct: 979 gttctgcactcctctccatgccttggaaccgcctccgcttgtgaagtactggattgggct 920 Query: 414 gtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 || ||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 919 gtctctgctgctgatgtgttccaggcagtggtcatgcccgttgatgtaga 870
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 79.8 bits (40), Expect = 7e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 |||||||||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 1063495 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtaga 1063444 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 304 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 363 |||| ||||||||| |||||||| |||||||||||||| || || ||| | || | | Sbjct: 1063682 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 1063623 Query: 364 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 414 || |||||||| ||||| |||||||||||||||||||| || ||||||||| Sbjct: 1063622 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 1063572
>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence Length = 157450 Score = 79.8 bits (40), Expect = 7e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 |||||||||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 60948 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtaga 60897 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 304 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 363 |||| ||||||||| |||||||| |||||||||||||| || || ||| | || | | Sbjct: 61135 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 61076 Query: 364 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 414 || |||||||| ||||| |||||||||||||||||||| || ||||||||| Sbjct: 61075 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 61025
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 79.8 bits (40), Expect = 7e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 |||||||||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 1063495 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtaga 1063444 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 304 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 363 |||| ||||||||| |||||||| |||||||||||||| || || ||| | || | | Sbjct: 1063682 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 1063623 Query: 364 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 414 || |||||||| ||||| |||||||||||||||||||| || ||||||||| Sbjct: 1063622 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 1063572
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 79.8 bits (40), Expect = 7e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttccaggcagtggtcatgcccattgatgtaga 463 |||||||||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 1063492 ctgtttctgctgctgatgtgctccaggcagtgatcatgcccattgatgtaga 1063441 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 304 gacatgaacccttgcccatcataaaagaactggagcttatcatcatttggctggtagact 363 |||| ||||||||| |||||||| |||||||||||||| || || ||| | || | | Sbjct: 1063679 gacaggaacccttgtccatcatagaagaactggagcttgtcttcgttttgttgaaaaatg 1063620 Query: 364 cccctccatgcttttgaaccgcctccactagtgaagtattggattggactg 414 || |||||||| ||||| |||||||||||||||||||| || ||||||||| Sbjct: 1063619 cctctccatgcctttgatccgcctccactagtgaagtactgaattggactg 1063569
>gb|AF236109.1|AF236109 Phaseolus vulgaris putative purple acid phosphatase (PAP) mRNA, complete cds Length = 996 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 368 tccatgcttttgaaccgcctccactagtgaagtattggattggactgtttctgctgctaa 427 ||||||| |||||||| || ||||| || ||| |||||||| | ||| || |||| || | Sbjct: 805 tccatgcctttgaacctccaccactggttaagaattggatttggctgcttgtgctactta 746 Query: 428 tgtgttccaggcagtggtcatgcccattgatgta 461 ||||||||| |||||||||||||||||| ||||| Sbjct: 745 tgtgttccaagcagtggtcatgcccattaatgta 712
>gb|AC008393.7| Homo sapiens chromosome 5 clone CTC-241N9, complete sequence Length = 166847 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ctcctttattggagacaattc 32 ||||||||||||||||||||| Sbjct: 155330 ctcctttattggagacaattc 155350
>gb|AC154757.2| Mus musculus BAC clone RP23-116J1 from chromosome 14, complete sequence Length = 202303 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 412 ctgtttctgctgctaatgtgttcca 436 |||||| |||||||||||||||||| Sbjct: 20173 ctgtttttgctgctaatgtgttcca 20149
>gb|AF236107.1|AF236107 Ipomoea batatas putative purple acid phosphatase precursor (PAP) mRNA, complete cds Length = 939 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 gacatgaacccttgcccatcataaaagaa 332 |||||||| |||||||||||||| ||||| Sbjct: 890 gacatgaatccttgcccatcatagaagaa 862
>gb|AC010285.4|AC010285 Homo sapiens chromosome 5 clone CTC-563A5, complete sequence Length = 124289 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ctcctttattggagacaattc 32 ||||||||||||||||||||| Sbjct: 12709 ctcctttattggagacaattc 12729
>gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map MAP_LOC, complete sequence Length = 73587 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cacattcaattttttcacaa 134 |||||||||||||||||||| Sbjct: 38746 cacattcaattttttcacaa 38727
>gb|AY757038.1| Macrohasseltia macroterantha trnL-trnF intergenic spacer, partial sequence; chloroplast Length = 307 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cattcaattttttcacaaat 136 |||||||||||||||||||| Sbjct: 60 cattcaattttttcacaaat 79
>gb|AY756988.1| Azara salicifolia trnL-trnF intergenic spacer, partial sequence; chloroplast Length = 111 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cattcaattttttcacaaat 136 |||||||||||||||||||| Sbjct: 63 cattcaattttttcacaaat 82
>gb|AC003986.2| Homo sapiens BAC clone CTA-370M10 from 7, complete sequence Length = 188205 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 tgcatgtccctcattctgcagtga 193 ||||||||||||||||||| |||| Sbjct: 122569 tgcatgtccctcattctgctgtga 122546
>emb|AL354704.17| Human DNA sequence from clone RP11-630H9 on chromosome 9, complete sequence Length = 130718 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 caattcacatccagttcaatattt 50 ||||||||||||||| |||||||| Sbjct: 89901 caattcacatccagtgcaatattt 89878
>gb|AC114770.4| Homo sapiens BAC clone RP11-422D16 from 4, complete sequence Length = 127953 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 agtgacataaatggagggctggaa 212 ||||||| |||||||||||||||| Sbjct: 117361 agtgacagaaatggagggctggaa 117384
>gb|AC152401.6| Mus musculus chromosome 3, clone RP23-287A2, complete sequence Length = 217151 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 255 agaaacatcataaaagatgaagtcagct 282 ||||||| ||||||| |||||||||||| Sbjct: 177012 agaaacaacataaaacatgaagtcagct 177039
>gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence Length = 186751 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ttctgctgctaatgtgttcc 435 |||||||||||||||||||| Sbjct: 159102 ttctgctgctaatgtgttcc 159083
>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete sequence Length = 190267 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gggctggaagtggtttgttt 223 |||||||||||||||||||| Sbjct: 137014 gggctggaagtggtttgttt 136995
>emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in linkage group 22, complete sequence Length = 209223 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 atggagggctggaagtggtt 218 |||||||||||||||||||| Sbjct: 125635 atggagggctggaagtggtt 125616
>emb|CT823560.2| Human DNA sequence from clone XX-HCC1954_31G13, complete sequence Length = 134950 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ttctgctgctaatgtgttcc 435 |||||||||||||||||||| Sbjct: 83657 ttctgctgctaatgtgttcc 83638
>gb|AC122183.4| Mus musculus BAC clone RP23-14P23 from 3, complete sequence Length = 210223 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 255 agaaacatcataaaagatgaagtcagct 282 ||||||| ||||||| |||||||||||| Sbjct: 9356 agaaacaacataaaacatgaagtcagct 9383
>dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1491A8 Length = 159490 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ttctgctgctaatgtgttcc 435 |||||||||||||||||||| Sbjct: 35833 ttctgctgctaatgtgttcc 35814 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,549,393 Number of Sequences: 3902068 Number of extensions: 4549393 Number of successful extensions: 88301 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88123 Number of HSP's gapped (non-prelim): 178 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)