Clone Name | rbart42h08 |
---|---|
Clone Library Name | barley_pub |
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 37.4 bits (85), Expect = 0.016 Identities = 15/23 (65%), Positives = 18/23 (78%) Frame = -1 Query: 431 LVANNVIPANWRPNTDYRSFVQF 363 +VA NVIPANW+P+ YRS V F Sbjct: 237 IVAYNVIPANWKPDESYRSIVNF 259
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 36.2 bits (82), Expect = 0.035 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -1 Query: 434 KLVANNVIPANWRPNTDYRSFVQF 363 K++A +VIPANWRP+ Y S VQF Sbjct: 245 KVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 35.8 bits (81), Expect = 0.046 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = -1 Query: 434 KLVANNVIPANWRPNTDYRSFVQF 363 K++A ++IPANWRP+ Y S VQF Sbjct: 167 KVIAKDIIPANWRPDAVYTSNVQF 190
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 34.3 bits (77), Expect = 0.13 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = -1 Query: 431 LVANNVIPANWRPNTDYRSFVQF 363 +VA+NVIPANW+P Y+S V F Sbjct: 251 VVASNVIPANWQPGAIYKSNVNF 273
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 33.9 bits (76), Expect = 0.18 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = -1 Query: 431 LVANNVIPANWRPNTDYRSFVQF 363 LV ++VIPANW+P+T Y S +QF Sbjct: 222 LVQDDVIPANWKPDTVYTSKLQF 244
>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1268 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/38 (36%), Positives = 16/38 (42%) Frame = -1 Query: 206 ITELEMPSVWCHTWGRRLAS*TCVGNVGSMVCMCSPAH 93 I E MP CH C+ N GS C+C P H Sbjct: 353 INECAMPGNVCHG--------DCLNNPGSYRCVCPPGH 382
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 14/55 (25%) Frame = -3 Query: 423 QQCHPGQLEAQHRLPLLRPVQLIGPDRPMS---------GHVRL-----HHARMH 301 Q HP Q + QH++P + Q +GP P + GHV + HH + H Sbjct: 1473 QSNHPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGHHMQQH 1527
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 431 LVANNVIPANWRPNTDYRSFVQFS 360 L A +VIP+NW P Y S + FS Sbjct: 245 LSATDVIPSNWVPKATYTSRLNFS 268 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,893,366 Number of Sequences: 219361 Number of extensions: 1067643 Number of successful extensions: 2967 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2722 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2966 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)