ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 37 0.016
2EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 36 0.035
3EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 36 0.046
4EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 34 0.13
5MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 34 0.18
6LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-bind... 28 9.7
7SUR2_CAEEL (Q10669) Protein sur-2 28 9.7
8EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXP... 28 9.7

>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -1

Query: 431 LVANNVIPANWRPNTDYRSFVQF 363
           +VA NVIPANW+P+  YRS V F
Sbjct: 237 IVAYNVIPANWKPDESYRSIVNF 259



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>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -1

Query: 434 KLVANNVIPANWRPNTDYRSFVQF 363
           K++A +VIPANWRP+  Y S VQF
Sbjct: 245 KVIAKDVIPANWRPDAVYTSNVQF 268



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>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -1

Query: 434 KLVANNVIPANWRPNTDYRSFVQF 363
           K++A ++IPANWRP+  Y S VQF
Sbjct: 167 KVIAKDIIPANWRPDAVYTSNVQF 190



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>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -1

Query: 431 LVANNVIPANWRPNTDYRSFVQF 363
           +VA+NVIPANW+P   Y+S V F
Sbjct: 251 VVASNVIPANWQPGAIYKSNVNF 273



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>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 431 LVANNVIPANWRPNTDYRSFVQF 363
           LV ++VIPANW+P+T Y S +QF
Sbjct: 222 LVQDDVIPANWKPDTVYTSKLQF 244



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>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 206 ITELEMPSVWCHTWGRRLAS*TCVGNVGSMVCMCSPAH 93
           I E  MP   CH          C+ N GS  C+C P H
Sbjct: 353 INECAMPGNVCHG--------DCLNNPGSYRCVCPPGH 382



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>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 14/55 (25%)
 Frame = -3

Query: 423  QQCHPGQLEAQHRLPLLRPVQLIGPDRPMS---------GHVRL-----HHARMH 301
            Q  HP Q + QH++P +   Q +GP  P +         GHV +     HH + H
Sbjct: 1473 QSNHPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGHHMQQH 1527



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>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)|
           (Ath-ExpBeta-1.5)
          Length = 271

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 431 LVANNVIPANWRPNTDYRSFVQFS 360
           L A +VIP+NW P   Y S + FS
Sbjct: 245 LSATDVIPSNWVPKATYTSRLNFS 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,893,366
Number of Sequences: 219361
Number of extensions: 1067643
Number of successful extensions: 2967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2966
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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