ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart42h05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 262 bits (132), Expect = 9e-67 Identities = 225/256 (87%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 2467198 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 2467257 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2467258 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 2467317 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 2467318 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 2467377 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 2467378 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 2467437 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 2467438 tggtacatgacgcgcg 2467453 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 185 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2507970 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2508029 Query: 186 c 186 | Sbjct: 2508030 c 2508030 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 185 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2467115 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2467174 Query: 186 c 186 | Sbjct: 2467175 c 2467175 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||| | ||||| ||| |||||| | Sbjct: 2508050 cggccattctcgccgacgacctcgacgtcgaacgccctctcgacggcgacgttgaccgtc 2508109 Query: 257 ttcatctcagtga 269 ||||||||||||| Sbjct: 2508110 ttcatctcagtga 2508122
>dbj|AK064287.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H01, full insert sequence Length = 1772 Score = 262 bits (132), Expect = 9e-67 Identities = 225/256 (87%) Strand = Plus / Minus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 1553 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 1494 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1493 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 1434 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 1433 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 1374 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 1373 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 1314 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 1313 tggtacatgacgcgcg 1298 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 185 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 1636 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 1577 Query: 186 c 186 | Sbjct: 1576 c 1576
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 262 bits (132), Expect = 9e-67 Identities = 225/256 (87%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 2467142 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 2467201 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2467202 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 2467261 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 2467262 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 2467321 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 2467322 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 2467381 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 2467382 tggtacatgacgcgcg 2467397 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 185 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2507914 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2507973 Query: 186 c 186 | Sbjct: 2507974 c 2507974 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 185 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 2467059 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 2467118 Query: 186 c 186 | Sbjct: 2467119 c 2467119 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||| | ||||| ||| |||||| | Sbjct: 2507994 cggccattctcgccgacgacctcgacgtcgaacgccctctcgacggcgacgttgaccgtc 2508053 Query: 257 ttcatctcagtga 269 ||||||||||||| Sbjct: 2508054 ttcatctcagtga 2508066
>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 122901 Score = 262 bits (132), Expect = 9e-67 Identities = 225/256 (87%) Strand = Plus / Minus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||| Sbjct: 76294 cggccattctcgccgacgacctcgacgtcgaatgccctcacgacggcgacgctgaccgcc 76235 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 76234 ttcatctcggtgatggcgagctccttgccgaggcacacgcggaggccggcctggaacacc 76175 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||||||| | ||||| ||||| |||||| || |||| || ||||||||||| || Sbjct: 76174 gggtacttgaagaggctctccggcacgaacgcgccgccggcgccggtgagccaccgctcc 76115 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| ||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct: 76114 ggccggaacgcgtcgcagtcggcgccccagatgcgcggcatgcggcccatggcgtagggg 76055 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 76054 tggtacatgacgcgcg 76039 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 185 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 76377 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 76318 Query: 186 c 186 | Sbjct: 76317 c 76317 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccgccacaaatctcggcg 185 ||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct: 35522 tgatcttcactgggagcccaccgctgatggacgcggtgagccccggcacgaatcttggcg 35463 Query: 186 c 186 | Sbjct: 35462 c 35462 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||| | ||||| ||| |||||| | Sbjct: 35442 cggccattctcgccgacgacctcgacgtcgaacgccctctcgacggcgacgttgaccgtc 35383 Query: 257 ttcatctcagtga 269 ||||||||||||| Sbjct: 35382 ttcatctcagtga 35370
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 214 bits (108), Expect = 2e-52 Identities = 219/256 (85%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 149610 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 149669 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 149670 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 149729 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 149730 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 149789 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 149790 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 149849 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 149850 tggtacatgacgcgcg 149865 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 131 ctcactgggagccctccactgatggacgcggtgagccccg 170 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 149535 ctcacttggagcccgccactgatcgacgcggtgagccccg 149574
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 214 bits (108), Expect = 2e-52 Identities = 219/256 (85%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 25754 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 25813 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 25814 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 25873 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 25874 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 25933 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 25934 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 25993 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 25994 tggtacatgacgcgcg 26009 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 131 ctcactgggagccctccactgatggacgcggtgagccccg 170 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 25679 ctcacttggagcccgccactgatcgacgcggtgagccccg 25718
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 214 bits (108), Expect = 2e-52 Identities = 219/256 (85%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 2373611 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 2373670 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 2373671 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 2373730 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 2373731 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 2373790 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 2373791 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 2373850 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 2373851 tggtacatgacgcgcg 2373866 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 131 ctcactgggagccctccactgatggacgcggtgagccccg 170 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 2373536 ctcacttggagcccgccactgatcgacgcggtgagccccg 2373575
>dbj|AK106404.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G11, full insert sequence Length = 1871 Score = 214 bits (108), Expect = 2e-52 Identities = 219/256 (85%) Strand = Plus / Minus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 1520 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 1461 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 1460 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 1401 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 1400 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 1341 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 1340 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 1281 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 1280 tggtacatgacgcgcg 1265 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 131 ctcactgggagccctccactgatggacgcggtgagccccg 170 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 1595 ctcacttggagcccgccactgatcgacgcggtgagccccg 1556
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 214 bits (108), Expect = 2e-52 Identities = 219/256 (85%) Strand = Plus / Plus Query: 197 cggccattctctccgacaacctccacgtcgaaagctctcaccacggccacgctgaccgcc 256 ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||| ||||| Sbjct: 2381393 cggccattctcgccgacgacctcgacgtcgaacgccctcacgacggcgacgctggccgcc 2381452 Query: 257 ttcatctcagtgacggcgagctccttgccgaggcatacgcggaggccggcctggaacact 316 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 2381453 ttcatctcggtgacggcgagctccttgccgaggcacacgcgttggccggcctggaacacc 2381512 Query: 317 gggtacttgtacaggctagccggcgcgaacgaaccaccgggtccagtgagccaccggtcg 376 ||||| |||||| || | ||||| ||||||| | ||||| || ||||||||||| | Sbjct: 2381513 gggtatttgtacgggttcgccgggacgaacgacgcgccggggccggtgagccaccgcgcc 2381572 Query: 377 gggcggaacgcttcgtaatcggcgccccagatgctgggcatgcggcccatggcgtacggg 436 || |||||||| |||| ||||||||||||||| ||||| || ||||||||||| ||| Sbjct: 2381573 ggccggaacgcggcgtagtcggcgccccagatgtgcggcatccgccccatggcgtagggg 2381632 Query: 437 tggtacatgacgcgcg 452 |||||||||||||||| Sbjct: 2381633 tggtacatgacgcgcg 2381648 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 131 ctcactgggagccctccactgatggacgcggtgagccccg 170 |||||| ||||||| |||||||| |||||||||||||||| Sbjct: 2381318 ctcacttggagcccgccactgatcgacgcggtgagccccg 2381357
>gb|BT018678.1| Zea mays clone EL01N0511B03.d mRNA sequence Length = 1945 Score = 198 bits (100), Expect = 1e-47 Identities = 199/232 (85%) Strand = Plus / Minus Query: 221 acgtcgaaagctctcaccacggccacgctgaccgccttcatctcagtgacggcgagctcc 280 |||||||| || ||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct: 1547 acgtcgaacgccctcacgacggccaccgcgaccgccttcatctcggtgacggcgagctcc 1488 Query: 281 ttgccgaggcatacgcggaggccggcctggaacactgggtacttgtacaggctagccggc 340 ||||||||||| ||||||||||| ||||||||||| |||||| |||||||||| | || Sbjct: 1487 ttgccgaggcacacgcggaggcccgcctggaacaccgggtacctgtacaggctctctggg 1428 Query: 341 gcgaacgaaccaccgggtccagtgagccaccggtcggggcggaacgcttcgtaatcggcg 400 ||||||| || |||| || |||||||| ||| | |||||||| || ||| |||||| Sbjct: 1427 acgaacgagccgccggcgccggtgagccagcggcccgggcggaaggcgccgtggtcggcg 1368 Query: 401 ccccagatgctgggcatgcggcccatggcgtacgggtggtacatgacgcgcg 452 |||||||||| |||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1367 ccccagatgcgcggcatgcggcccatggcgtaggggtggtacatcacgcgcg 1316 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 126 tgatcctcactgggagccctccactgatggacgcggtgagccccg 170 |||||||||| |||||||| || |||||||||||||||||||||| Sbjct: 1642 tgatcctcaccgggagcccgccgctgatggacgcggtgagccccg 1598
>ref|NM_190681.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1427 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1368 Query: 299 aggccggcctggaacactgggta 321 | ||| ||||||||||| ||||| Sbjct: 1367 acgcccgcctggaacaccgggta 1345
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 37090871 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 37090930 Query: 299 aggccggcctggaacactgggta 321 | ||| ||||||||||| ||||| Sbjct: 37090931 acgcccgcctggaacaccgggta 37090953
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 92012 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 92071 Query: 299 aggccggcctggaacactgggta 321 | ||| ||||||||||| ||||| Sbjct: 92072 acgcccgcctggaacaccgggta 92094
>dbj|AK119283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C08, full insert sequence Length = 2845 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1518 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1459 Query: 299 aggccggcctggaacactgggta 321 | ||| ||||||||||| ||||| Sbjct: 1458 acgcccgcctggaacaccgggta 1436
>dbj|AK100746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118I04, full insert sequence Length = 1754 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1519 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1460 Query: 299 aggccggcctggaacactgggta 321 | ||| ||||||||||| ||||| Sbjct: 1459 acgcccgcctggaacaccgggta 1437
>dbj|AK061128.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H02, full insert sequence Length = 1754 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| || |||||||| ||| ||| ||||||||||||| ||| ||||| Sbjct: 1519 acggcgacgatgacggctttcatctccatgagggctagctccttgccgatgcagacgcga 1460 Query: 299 aggccggcctggaacactgggta 321 | ||| ||||||||||| ||||| Sbjct: 1459 acgcccgcctggaacaccgggta 1437
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 48.1 bits (24), Expect = 0.025 Identities = 87/108 (80%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 38447 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 38388 Query: 299 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 346 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 38387 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 38340
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.025 Identities = 87/108 (80%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 21647271 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 21647212 Query: 299 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 346 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 21647211 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 21647164
>dbj|AK111423.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G11, full insert sequence Length = 1730 Score = 48.1 bits (24), Expect = 0.025 Identities = 87/108 (80%) Strand = Plus / Plus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 137 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 196 Query: 299 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 346 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 197 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 244
>dbj|AK105264.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D01, full insert sequence Length = 2395 Score = 48.1 bits (24), Expect = 0.025 Identities = 87/108 (80%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 1541 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 1482 Query: 299 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 346 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 1481 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 1434
>dbj|AK105131.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G02, full insert sequence Length = 894 Score = 48.1 bits (24), Expect = 0.025 Identities = 87/108 (80%) Strand = Plus / Minus Query: 239 acggccacgctgaccgccttcatctcagtgacggcgagctccttgccgaggcatacgcgg 298 ||||| ||| |||| ||||||||||| ||| |||||| |||||||| | ||| ||||| Sbjct: 443 acggcgacgatgacggccttcatctccatgatggcgagatccttgcctacgcagacgcgc 384 Query: 299 aggccggcctggaacactgggtacttgtacaggctagccggcgcgaac 346 | ||| ||||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 383 accccgccctggaagaccgggtacctgtacgggctctccggcacgaac 336
>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster, complete sequence Length = 49461 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cggaactcgacgtcgaagcgc 122 ||||||||||||||||||||| Sbjct: 29591 cggaactcgacgtcgaagcgc 29611
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 caccacggccacgctgaccgc 255 ||||||||||||||||||||| Sbjct: 148971 caccacggccacgctgaccgc 148951
>dbj|AP003031.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-535A19, complete sequences Length = 95585 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 tttcttattaaagaaacaact 36 ||||||||||||||||||||| Sbjct: 92940 tttcttattaaagaaacaact 92960
>dbj|AP003168.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-263C24, complete sequence Length = 122001 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 tttcttattaaagaaacaact 36 ||||||||||||||||||||| Sbjct: 5632 tttcttattaaagaaacaact 5652
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 gacggcgagctccttgccgag 288 ||||||||||||||||||||| Sbjct: 2245338 gacggcgagctccttgccgag 2245358
>ref|XM_478794.1| Oryza sativa (japonica cultivar-group), mRNA Length = 911 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 tgctgggcatgcggcccatggcgt 431 ||||| |||||||||||||||||| Sbjct: 105 tgctgtgcatgcggcccatggcgt 82
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 accacggccacgctgaccgc 255 |||||||||||||||||||| Sbjct: 96756 accacggccacgctgaccgc 96775
>emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on chromosome 13 Contains the 5' end of the UGCGL2 gene for UDP-glucose ceramide glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), the 5' end of the gene for a novel protein similar to heparan sulfate 6-sulfotransferase and two CpG islands, complete sequence Length = 186131 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ctctatgtacattgctagcg 78 |||||||||||||||||||| Sbjct: 12201 ctctatgtacattgctagcg 12220
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 cgccccagatgctgggcatg 418 |||||||||||||||||||| Sbjct: 3475098 cgccccagatgctgggcatg 3475079
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ctgaattttttatctgaagtcgga 105 |||||||||||||| ||||||||| Sbjct: 1688469 ctgaattttttatccgaagtcgga 1688446
>gb|AC087638.7| Homo sapiens chromosome 15, clone RP11-655F8, complete sequence Length = 173062 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgaaagctctcaccacggcc 244 |||||||||||||||||||| Sbjct: 153399 cgaaagctctcaccacggcc 153418
>gb|AC010809.10| Homo sapiens, clone RP11-3D4, complete sequence Length = 173087 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgaaagctctcaccacggcc 244 |||||||||||||||||||| Sbjct: 168937 cgaaagctctcaccacggcc 168918
>gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosome 9, complete sequence Length = 142451 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 atctgaattttttatctgaa 99 |||||||||||||||||||| Sbjct: 36587 atctgaattttttatctgaa 36606
>emb|BX120011.13| Zebrafish DNA sequence from clone DKEY-18O5 in linkage group 25, complete sequence Length = 225675 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tcttattaaagaaacaactc 37 |||||||||||||||||||| Sbjct: 193897 tcttattaaagaaacaactc 193878
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cgctgaccgccttcatctca 265 |||||||||||||||||||| Sbjct: 491222 cgctgaccgccttcatctca 491241
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 tgctgggcatgcggcccatggcgt 431 ||||| |||||||||||||||||| Sbjct: 23099708 tgctgtgcatgcggcccatggcgt 23099685
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 tgctgggcatgcggcccatggcgt 431 ||||| |||||||||||||||||| Sbjct: 43892 tgctgtgcatgcggcccatggcgt 43869
>dbj|AK063015.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A09, full insert sequence Length = 912 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 tgctgggcatgcggcccatggcgt 431 ||||| |||||||||||||||||| Sbjct: 106 tgctgtgcatgcggcccatggcgt 83
>emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chromosome 9, complete sequence Length = 193329 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 atctgaattttttatctgaa 99 |||||||||||||||||||| Sbjct: 61168 atctgaattttttatctgaa 61187 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,992,211 Number of Sequences: 3902068 Number of extensions: 2992211 Number of successful extensions: 55811 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55462 Number of HSP's gapped (non-prelim): 348 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
