ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468361.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1080 Score = 95.6 bits (48), Expect = 1e-16 Identities = 143/174 (82%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 224 atcagcccgatttcttgcgtctgatctcgatgccctgcacgatgaggccgctcttccagt 283 ||||||| |||||||| |||||||||| ||||||||||| || || || |||||||| | Sbjct: 906 atcagccagatttcttaagtctgatctcaatgccctgcacaataagacctctcttccaat 847 Query: 284 tcccgcctttcgtctccaccaggctgatggacacctcgccgtcgtcgccgcccccctcgt 343 | || || || ||||||| |||||||| | ||||||| || || || || || |||| Sbjct: 846 tgcctcccttggtctccatcaggctgaagcacacctctccatcttcaccttcc---tcgt 790 Query: 344 tgaggaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 ||| |||||| |||| |||||||||||||||| |||| ||||||| |||||||| Sbjct: 789 tgatgaactcacccatctccagctccatccactcgtcagtccttttctgaggga 736
>ref|XM_507040.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.25 mRNA Length = 1168 Score = 95.6 bits (48), Expect = 1e-16 Identities = 143/174 (82%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 224 atcagcccgatttcttgcgtctgatctcgatgccctgcacgatgaggccgctcttccagt 283 ||||||| |||||||| |||||||||| ||||||||||| || || || |||||||| | Sbjct: 984 atcagccagatttcttaagtctgatctcaatgccctgcacaataagacctctcttccaat 925 Query: 284 tcccgcctttcgtctccaccaggctgatggacacctcgccgtcgtcgccgcccccctcgt 343 | || || || ||||||| |||||||| | ||||||| || || || || || |||| Sbjct: 924 tgcctcccttggtctccatcaggctgaagcacacctctccatcttcaccttcc---tcgt 868 Query: 344 tgaggaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 ||| |||||| |||| |||||||||||||||| |||| ||||||| |||||||| Sbjct: 867 tgatgaactcacccatctccagctccatccactcgtcagtccttttctgaggga 814
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 95.6 bits (48), Expect = 1e-16 Identities = 143/174 (82%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 224 atcagcccgatttcttgcgtctgatctcgatgccctgcacgatgaggccgctcttccagt 283 ||||||| |||||||| |||||||||| ||||||||||| || || || |||||||| | Sbjct: 34854291 atcagccagatttcttaagtctgatctcaatgccctgcacaataagacctctcttccaat 34854232 Query: 284 tcccgcctttcgtctccaccaggctgatggacacctcgccgtcgtcgccgcccccctcgt 343 | || || || ||||||| |||||||| | ||||||| || || || || || |||| Sbjct: 34854231 tgcctcccttggtctccatcaggctgaagcacacctctccatcttcaccttcc---tcgt 34854175 Query: 344 tgaggaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 ||| |||||| |||| |||||||||||||||| |||| ||||||| |||||||| Sbjct: 34854174 tgatgaactcacccatctccagctccatccactcgtcagtccttttctgaggga 34854121 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 348 gaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 |||||| |||||||||||||||||||| || || | ||||| |||||||| Sbjct: 34842845 gaactcacccagctccagctccatccaaccatcagccctttcctgaggga 34842796 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 349 aactcgcccagctccagctccatccacccgtcggtcctttgctgaggg 396 ||||| ||||||| |||||||||||| ||||| | ||||| ||||||| Sbjct: 34841336 aactcacccagcttcagctccatccaaccgtcagcccttttctgaggg 34841289 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 343 ttgaggaactcgcccagctccagctccatcca 374 |||| ||||||||||| ||||| ||||||||| Sbjct: 34833068 ttgaagaactcgcccaactccacctccatcca 34833037 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 acctcgccgtcgtcgccgcc 335 |||||||||||||||||||| Sbjct: 27137374 acctcgccgtcgtcgccgcc 27137355
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 95.6 bits (48), Expect = 1e-16 Identities = 143/174 (82%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 224 atcagcccgatttcttgcgtctgatctcgatgccctgcacgatgaggccgctcttccagt 283 ||||||| |||||||| |||||||||| ||||||||||| || || || |||||||| | Sbjct: 75886 atcagccagatttcttaagtctgatctcaatgccctgcacaataagacctctcttccaat 75827 Query: 284 tcccgcctttcgtctccaccaggctgatggacacctcgccgtcgtcgccgcccccctcgt 343 | || || || ||||||| |||||||| | ||||||| || || || || || |||| Sbjct: 75826 tgcctcccttggtctccatcaggctgaagcacacctctccatcttcaccttcc---tcgt 75770 Query: 344 tgaggaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 ||| |||||| |||| |||||||||||||||| |||| ||||||| |||||||| Sbjct: 75769 tgatgaactcacccatctccagctccatccactcgtcagtccttttctgaggga 75716 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 348 gaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 |||||| |||||||||||||||||||| || || | ||||| |||||||| Sbjct: 64440 gaactcacccagctccagctccatccaaccatcagccctttcctgaggga 64391 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 349 aactcgcccagctccagctccatccacccgtcggtcctttgctgaggg 396 ||||| ||||||| |||||||||||| ||||| | ||||| ||||||| Sbjct: 62931 aactcacccagcttcagctccatccaaccgtcagcccttttctgaggg 62884 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 343 ttgaggaactcgcccagctccagctccatcca 374 |||| ||||||||||| ||||| ||||||||| Sbjct: 54663 ttgaagaactcgcccaactccacctccatcca 54632
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 95.6 bits (48), Expect = 1e-16 Identities = 143/174 (82%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 224 atcagcccgatttcttgcgtctgatctcgatgccctgcacgatgaggccgctcttccagt 283 ||||||| |||||||| |||||||||| ||||||||||| || || || |||||||| | Sbjct: 13788 atcagccagatttcttaagtctgatctcaatgccctgcacaataagacctctcttccaat 13729 Query: 284 tcccgcctttcgtctccaccaggctgatggacacctcgccgtcgtcgccgcccccctcgt 343 | || || || ||||||| |||||||| | ||||||| || || || || || |||| Sbjct: 13728 tgcctcccttggtctccatcaggctgaagcacacctctccatcttcaccttcc---tcgt 13672 Query: 344 tgaggaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 ||| |||||| |||| |||||||||||||||| |||| ||||||| |||||||| Sbjct: 13671 tgatgaactcacccatctccagctccatccactcgtcagtccttttctgaggga 13618 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 348 gaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 |||||| |||||||||||||||||||| || || | ||||| |||||||| Sbjct: 2342 gaactcacccagctccagctccatccaaccatcagccctttcctgaggga 2293 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 349 aactcgcccagctccagctccatccacccgtcggtcctttgctgaggg 396 ||||| ||||||| |||||||||||| ||||| | ||||| ||||||| Sbjct: 833 aactcacccagcttcagctccatccaaccgtcagcccttttctgaggg 786
>dbj|AK098981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092F18, full insert sequence Length = 1080 Score = 95.6 bits (48), Expect = 1e-16 Identities = 143/174 (82%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 224 atcagcccgatttcttgcgtctgatctcgatgccctgcacgatgaggccgctcttccagt 283 ||||||| |||||||| |||||||||| ||||||||||| || || || |||||||| | Sbjct: 906 atcagccagatttcttaagtctgatctcaatgccctgcacaataagacctctcttccaat 847 Query: 284 tcccgcctttcgtctccaccaggctgatggacacctcgccgtcgtcgccgcccccctcgt 343 | || || || ||||||| |||||||| | ||||||| || || || || || |||| Sbjct: 846 tgcctcccttggtctccatcaggctgaagcacacctctccatcttcaccttcc---tcgt 790 Query: 344 tgaggaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 ||| |||||| |||| |||||||||||||||| |||| ||||||| |||||||| Sbjct: 789 tgatgaactcacccatctccagctccatccactcgtcagtccttttctgaggga 736
>dbj|AK060823.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B03, full insert sequence Length = 1168 Score = 95.6 bits (48), Expect = 1e-16 Identities = 143/174 (82%), Gaps = 3/174 (1%) Strand = Plus / Minus Query: 224 atcagcccgatttcttgcgtctgatctcgatgccctgcacgatgaggccgctcttccagt 283 ||||||| |||||||| |||||||||| ||||||||||| || || || |||||||| | Sbjct: 984 atcagccagatttcttaagtctgatctcaatgccctgcacaataagacctctcttccaat 925 Query: 284 tcccgcctttcgtctccaccaggctgatggacacctcgccgtcgtcgccgcccccctcgt 343 | || || || ||||||| |||||||| | ||||||| || || || || || |||| Sbjct: 924 tgcctcccttggtctccatcaggctgaagcacacctctccatcttcaccttcc---tcgt 868 Query: 344 tgaggaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 ||| |||||| |||| |||||||||||||||| |||| ||||||| |||||||| Sbjct: 867 tgatgaactcacccatctccagctccatccactcgtcagtccttttctgaggga 814
>ref|XM_468360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 519 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 348 gaactcgcccagctccagctccatccacccgtcggtcctttgctgaggga 397 |||||| |||||||||||||||||||| || || | ||||| |||||||| Sbjct: 393 gaactcacccagctccagctccatccaaccatcagccctttcctgaggga 344
>gb|BT018973.1| Zea mays clone Contig385.F mRNA sequence Length = 1282 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 244 ctgatctcgatgccctgcacgatgaggccgctcttccagttcccgcctttcgtctccacc 303 |||||||| ||||||||||| | || || ||||||||||| ||||| | ||||||| Sbjct: 1013 ctgatctcaatgccctgcacagtaagacctctcttccagttgccgcccctggtctccatg 954 Query: 304 aggctgatggacacctc 320 ||||||| ||||||||| Sbjct: 953 aggctgacggacacctc 937
>ref|XM_468359.1| Oryza sativa (japonica cultivar-group), mRNA Length = 711 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 349 aactcgcccagctccagctccatccacccgtcggtcctttgctgaggg 396 ||||| ||||||| |||||||||||| ||||| | ||||| ||||||| Sbjct: 479 aactcacccagcttcagctccatccaaccgtcagcccttttctgaggg 432
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 316 acctcgccgtcgtcgccgcccccctc 341 |||||||||||||||||||| ||||| Sbjct: 15632159 acctcgccgtcgtcgccgccgccctc 15632134
>gb|AC022108.4|AC022108 Homo sapiens chromosome 5 clone CTC-426B10, complete sequence Length = 235599 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 gcactggaaatggaatcatggg 473 |||||||||||||||||||||| Sbjct: 81864 gcactggaaatggaatcatggg 81843
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgcccccctcg 342 ||||||||||||||||||| |||||| Sbjct: 4179924 cctcgccgtcgtcgccgccgccctcg 4179899 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgccc 336 |||||||||||||||||||| Sbjct: 2672026 cctcgccgtcgtcgccgccc 2672007
>gb|AC012611.6|AC012611 Homo sapiens chromosome 5 clone CTC-554K7, complete sequence Length = 115855 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 gcactggaaatggaatcatggg 473 |||||||||||||||||||||| Sbjct: 38261 gcactggaaatggaatcatggg 38240
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 316 acctcgccgtcgtcgccgcccccctc 341 |||||||||||||||||||| ||||| Sbjct: 70056 acctcgccgtcgtcgccgccgccctc 70031
>gb|AC135794.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084H09, complete sequence Length = 130151 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgcccccctc 341 ||||||||||||||||| ||||||| Sbjct: 36284 cctcgccgtcgtcgccgtccccctc 36260
>gb|BC073832.1| Homo sapiens cDNA clone MGC:90157 IMAGE:4470345, complete cds Length = 920 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 gccgctcttccagttcccgcc 290 ||||||||||||||||||||| Sbjct: 325 gccgctcttccagttcccgcc 345
>gb|BC064526.1| Homo sapiens cDNA clone IMAGE:5763881, partial cds Length = 1408 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 gccgctcttccagttcccgcc 290 ||||||||||||||||||||| Sbjct: 342 gccgctcttccagttcccgcc 362
>emb|AL138762.20| Human DNA sequence from clone RP11-179B2 on chromosome 10, complete sequence Length = 113297 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 gccgctcttccagttcccgcc 290 ||||||||||||||||||||| Sbjct: 109341 gccgctcttccagttcccgcc 109361
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 tccaccaggctgatggacacc 318 ||||||||||||||||||||| Sbjct: 2244144 tccaccaggctgatggacacc 2244124
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgcccccctc 341 ||||||||||||||||| ||||||| Sbjct: 4064622 cctcgccgtcgtcgccgtccccctc 4064598
>gb|AF460992.1| Homo sapiens putative C10ORF6 short splice variant mRNA, partial sequence Length = 1037 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 gccgctcttccagttcccgcc 290 ||||||||||||||||||||| Sbjct: 752 gccgctcttccagttcccgcc 772
>dbj|AK063747.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G06, full insert sequence Length = 667 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgcccccctc 341 ||||||||||||||||| ||||||| Sbjct: 235 cctcgccgtcgtcgccgtccccctc 211
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgcccccctc 341 ||||||||||||||||| ||||||| Sbjct: 4073316 cctcgccgtcgtcgccgtccccctc 4073292
>gb|AC022346.4| Drosophila melanogaster clone BACR22I24, complete sequence Length = 181052 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 ccagctccagctccatccac 375 |||||||||||||||||||| Sbjct: 161535 ccagctccagctccatccac 161516
>ref|XM_468357.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 343 ttgaggaactcgcccagctccagctccatcca 374 |||| ||||||||||| ||||| ||||||||| Sbjct: 482 ttgaagaactcgcccaactccacctccatcca 451
>ref|XM_468720.1| Oryza sativa (japonica cultivar-group), mRNA Length = 607 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 172 cgccgtcgtcgccgcccccc 191
>ref|NM_186952.1| Oryza sativa (japonica cultivar-group), mRNA Length = 861 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 318 ctcgccgtcgtcgccgcccccctcgttg 345 |||||||||||||||||| || |||||| Sbjct: 288 ctcgccgtcgtcgccgccgccgtcgttg 261
>ref|XM_369167.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00077.4) partial mRNA Length = 1638 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ggacacctcgccgtcgtcgc 331 |||||||||||||||||||| Sbjct: 792 ggacacctcgccgtcgtcgc 773
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 17225000 cgccgtcgtcgccgcccccc 17224981 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 cgcccccctcgttgaggaac 351 |||||||||||||||||||| Sbjct: 12020831 cgcccccctcgttgaggaac 12020812
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete sequence Length = 115326 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 57744 cgccgtcgtcgccgcccccc 57725
>gb|AC116748.8| Mus musculus chromosome 9, clone RP23-80L8, complete sequence Length = 268886 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 ggttccttctcctgagtctt 450 |||||||||||||||||||| Sbjct: 252000 ggttccttctcctgagtctt 252019
>ref|NM_007278.1| Homo sapiens GABA(A) receptor-associated protein (GABARAP), mRNA Length = 924 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 28 cgccgtcgtcgccgcccccc 47
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cctcgccgtcgtcgccgccc 336 |||||||||||||||||||| Sbjct: 190445 cctcgccgtcgtcgccgccc 190464
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cctcgccgtcgtcgccgccc 336 |||||||||||||||||||| Sbjct: 104281 cctcgccgtcgtcgccgccc 104300
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 116393 cgccgtcgtcgccgcccccc 116374
>gb|AC113208.5| Homo sapiens chromosome 15, clone RP11-69H7, complete sequence Length = 153468 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cagcaaaaggagaggtgttc 143 |||||||||||||||||||| Sbjct: 62181 cagcaaaaggagaggtgttc 62162
>emb|CR607499.1| full-length cDNA clone CS0DF034YP05 of Fetal brain of Homo sapiens (human) Length = 1615 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 208 cgccgtcgtcgccgcccccc 189
>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence Length = 22437 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 acacctcgccgtcgtcgccg 333 |||||||||||||||||||| Sbjct: 8184 acacctcgccgtcgtcgccg 8165
>emb|BX465197.8| Zebrafish DNA sequence from clone DKEY-184E24 in linkage group 14, complete sequence Length = 101530 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 gttcaaaaacccacattgcagaag 163 |||||| ||||||||||||||||| Sbjct: 70995 gttcaataacccacattgcagaag 71018
>gb|AF067171.1|AF067171 Homo sapiens ganglioside expression factor 2 homolog mRNA, complete cds Length = 924 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 28 cgccgtcgtcgccgcccccc 47
>gb|AC022343.2|AC022343 Drosophila melanogaster, chromosome X, region 12E-12F, BAC clone BACR33F13, complete sequence Length = 164853 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ccagctccagctccatccac 375 |||||||||||||||||||| Sbjct: 104221 ccagctccagctccatccac 104240
>gb|AC120057.9| Homo sapiens chromosome 17, clone CTD-2545G14, complete sequence Length = 198821 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 196553 cgccgtcgtcgccgcccccc 196534
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 318 ctcgccgtcgtcgccgcccccctcgttg 345 |||||||||||||||||| || |||||| Sbjct: 9186777 ctcgccgtcgtcgccgccgccgtcgttg 9186804
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgccc 336 |||||||||||||||||||| Sbjct: 19790658 cctcgccgtcgtcgccgccc 19790639
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 17218569 cgccgtcgtcgccgcccccc 17218550 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 cgcccccctcgttgaggaac 351 |||||||||||||||||||| Sbjct: 12017594 cgcccccctcgttgaggaac 12017575
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 cgcccccctcgttgaggaac 351 |||||||||||||||||||| Sbjct: 41411 cgcccccctcgttgaggaac 41392
>gb|AC154850.2| Mus musculus BAC clone RP23-36B4 from chromosome 9, complete sequence Length = 247708 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 ggttccttctcctgagtctt 450 |||||||||||||||||||| Sbjct: 55320 ggttccttctcctgagtctt 55339
>gb|AC022236.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-425I8, complete sequence Length = 198392 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gatgatgcatatctgcttaa 30 |||||||||||||||||||| Sbjct: 124582 gatgatgcatatctgcttaa 124601
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 acctcgccgtcgtcgccgcc 335 |||||||||||||||||||| Sbjct: 33823 acctcgccgtcgtcgccgcc 33804
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctcgccgtcgtcgccgccc 336 |||||||||||||||||||| Sbjct: 57703 cctcgccgtcgtcgccgccc 57684
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 acctcgccgtcgtcgccgcc 335 |||||||||||||||||||| Sbjct: 109023 acctcgccgtcgtcgccgcc 109004
>dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0046D03 Length = 150554 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 318 ctcgccgtcgtcgccgcccccctcgttg 345 |||||||||||||||||| || |||||| Sbjct: 69650 ctcgccgtcgtcgccgccgccgtcgttg 69677
>emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in linkage group 14, complete sequence Length = 160087 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 gttcaaaaacccacattgcagaag 163 |||||| ||||||||||||||||| Sbjct: 18871 gttcaataacccacattgcagaag 18848
>dbj|AK122114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128A11, full insert sequence Length = 2728 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 204 cgccgtcgtcgccgcccccc 223
>dbj|AK098634.1| Homo sapiens cDNA FLJ25768 fis, clone TST06391, highly similar to GABA(A) receptor-associated protein Length = 895 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 32 cgccgtcgtcgccgcccccc 51
>dbj|AK101871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070F06, full insert sequence Length = 3349 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 acctcgccgtcgtcgccgcc 335 |||||||||||||||||||| Sbjct: 878 acctcgccgtcgtcgccgcc 859
>gb|AE003496.4| Drosophila melanogaster chromosome X, section 48 of 74 of the complete sequence Length = 299868 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ccagctccagctccatccac 375 |||||||||||||||||||| Sbjct: 46374 ccagctccagctccatccac 46393
>gb|AF044671.1|AF044671 Homo sapiens MM46 mRNA, complete cds Length = 859 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 2 cgccgtcgtcgccgcccccc 21
>gb|AF043654.1|AF043654 Streptomyces lividans 1326 BxlS (bxlS), BxlR (bxlR), BxlE (bxlE), BxlF (bxlF), BxlG (bxlG), and BxlA (bxlA) genes, complete cds Length = 8616 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 ggacacctcgccgtcgtcgccgcc 335 ||||||||||||||||||| |||| Sbjct: 7512 ggacacctcgccgtcgtcgacgcc 7489
>gb|AC003688.1|AC003688 Homo sapiens chromosome 17, clone hRPC.4_G_17, complete sequence Length = 98117 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 44802 cgccgtcgtcgccgcccccc 44783
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 315 cacctcgccgtcgtcgccgcccccctcg 342 |||||||||| |||||||||||| |||| Sbjct: 1867169 cacctcgccgacgtcgccgccccgctcg 1867142
>gb|AF022814.1|AF022814 Fugu rubripes transcription factor (SLP-1) and heme-oxygenase genes, complete cds Length = 37400 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gacacctcgccgtcgtcgccgccc 336 |||||||||||| ||||||||||| Sbjct: 34570 gacacctcgccgccgtcgccgccc 34593
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 ggacacctcgccgtcgtcgccgcc 335 ||||||||||||||||||| |||| Sbjct: 59947 ggacacctcgccgtcgtcgacgcc 59924
>dbj|AB030711.1| Homo sapiens FLC3B mRNA for MAP1 light chain 3 related protein, complete cds Length = 906 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgccgtcgtcgccgcccccc 339 |||||||||||||||||||| Sbjct: 27 cgccgtcgtcgccgcccccc 46 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,857,697 Number of Sequences: 3902068 Number of extensions: 3857697 Number of successful extensions: 94277 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93220 Number of HSP's gapped (non-prelim): 1057 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
