ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY177684.1| Hordeum vulgare subsp. vulgare pyrroline-5-carbox... 755 0.0
2gb|AY880317.1| Triticum aestivum pyrroline-5-carboxylate reducta... 559 e-156
3ref|XM_463717.1| Oryza sativa (japonica cultivar-group), predic... 270 3e-69
4dbj|AK070184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 3e-69
5dbj|AK067368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 3e-69
6gb|DQ026301.1| Zea mays pyrroline 5-carboxylate reductase (p5cr)... 222 7e-55
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
8dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
9emb|X62842.1|PSPROCRNA P.sativum proC mRNA for d1-pyrroline carb... 48 0.024
10emb|X16352.1|GMP5CR Glycine max mRNA for pyrroline-5-carboxylate... 48 0.024
11ref|NM_137927.1| Drosophila melanogaster CG9871-RA (CG9871), mRNA 46 0.094
12gb|AY089455.1| Drosophila melanogaster AT26853 full insert cDNA 46 0.094
13gb|AC099036.1| Drosophila melanogaster, chromosome 2R, region 59... 46 0.094
14gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, r... 46 0.094
15gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68... 46 0.094
16gb|AC102614.11| Mus musculus chromosome 8, clone RP23-421L10, co... 42 1.5
17dbj|BS000098.1| Pan troglodytes chromosome 22 clone:CH251-269G16... 42 1.5
18emb|BX470116.5| Zebrafish DNA sequence from clone DKEY-244B23 in... 42 1.5
19gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 5.8
20gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 5.8
21gb|AC087363.17| Homo sapiens chromosome 8, clone RP11-529P14, co... 40 5.8
22gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 5.8
23gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence 40 5.8
24emb|AL139387.12| Human DNA sequence from clone RP11-12I14 on chr... 40 5.8
25emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 5.8
26gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, co... 40 5.8
27gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, co... 40 5.8
28gb|AC159628.2| Mus musculus BAC clone RP24-206C4 from chromosome... 40 5.8
29gb|AC146885.3| Callithrix jacchus clone CH259-349L5, complete se... 40 5.8
30gb|AF084032.1|AF084032 Rhodobacter sphaeroides strain 2.4.1T qui... 40 5.8
31dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 5.8
32emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chr... 40 5.8
33gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, comp... 40 5.8
34gb|AC084416.36| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 5.8
35dbj|AB056453.1| Vigna unguiculata VuP5CR mRNA, complete cds 40 5.8 
>gb|AY177684.1| Hordeum vulgare subsp. vulgare pyrroline-5-carboxylate reductase
            mRNA, complete cds
          Length = 1023

 Score =  755 bits (381), Expect = 0.0
 Identities = 391/393 (99%), Gaps = 1/393 (0%)
 Strand = Plus / Minus

                                                                        
Query: 41   gttgacaactagtttcgagtctgagatttaaatatctcataaatcatgtctacaccattt 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 gttgacaactagtttcgagtctgagatttaaatatctcataaatcatgtctacaccattt 964

                                                                        
Query: 101  tattgcagaatcgtagcaaacctaacaagggctaataaatttataggactaatttttcga 160
            |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 963  tattgcagaatcgt-gcaaacctaacaagggctagtaaatttataggactaatttttcga 905

                                                                        
Query: 161  gagctctcggcatcttgttgtggcagcaacaacggcatttatcagtgtgccacggaacga 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  gagctctcggcatcttgttgtggcagcaacaacggcatttatcagtgtgccacggaacga 845

                                                                        
Query: 221  acccttctcgagctcatgaacaccagctatcgtagttcctgcaggggaagtgacctgatc 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  acccttctcgagctcatgaacaccagctatcgtagttcctgcaggggaagtgacctgatc 785

                                                                        
Query: 281  cttcagctggcctggatgtttacccgtctcgctaaccatggttgcagcacctagaactgt 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  cttcagctggcctggatgtttacccgtctcgctaaccatggttgcagcacctagaactgt 725

                                                                        
Query: 341  ctgagctgcaagaccaagagcaagatcccgaggaagcccagcagcaactccaccatcagc 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  ctgagctgcaagaccaagagcaagatcccgaggaagcccagcagcaactccaccatcagc 665

                                             
Query: 401  catggcctctattgccaagaaaatgtaggccgg 433
            |||||||||||||||||||||||||||||||||
Sbjct: 664  catggcctctattgccaagaaaatgtaggccgg 632
to top
>gb|AY880317.1| Triticum aestivum pyrroline-5-carboxylate reductase mRNA, complete
            cds
          Length = 1025

 Score =  559 bits (282), Expect = e-156
 Identities = 381/412 (92%), Gaps = 7/412 (1%)
 Strand = Plus / Minus

                                                                        
Query: 25   tagaccaggaaaatatgttgacaactagtttcgagtctgagatttaaatatctcataaat 84
            |||||||||||||| | | || |||| |||| ||||||||||||  || |||||||||||
Sbjct: 1016 tagaccaggaaaatttatcgataacttgtttggagtctgagatt--aagatctcataaat 959

                                                                        
Query: 85   catgtctacaccattttattgcagaatcgtagcaaacctaacaagggctaataaatttat 144
            ||||||  ||||||||||||   |||| |||||||| ||||||| |||||  |   ||||
Sbjct: 958  catgtc--caccattttattctggaattgtagcaaaactaacaatggctaccaggattat 901

                                                                        
Query: 145  a---ggactaatttttcgagagctctcggcatcttgttgtggcagcaacaacggcattta 201
            |   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  aagaggactaattttttgagagctctcggcatcttgttgtggcagcaacaacggcattta 841

                                                                        
Query: 202  tcagtgtgccacggaacgaacccttctcgagctcatgaacaccagctatcgtagttcctg 261
            |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 840  tcagtgtgccrcgaaacgaacccttctcgagctcatgaacaccagctatggtagttcctg 781

                                                                        
Query: 262  caggggaagtgacctgatccttcagctggcctggatgtttacccgtctcgctaaccatgg 321
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 780  caggggaagtgacctgatccttcagctgccctggatgtttacccgtctcgctaaccatgg 721

                                                                        
Query: 322  ttgcagcacctagaactgtctgagctgcaagaccaagagcaagatcccgaggaagcccag 381
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  ttgcagcacctagcactgtctgagctgcaagaccaagagcaagatcccgaggaagcccag 661

                                                                
Query: 382  cagcaactccaccatcagccatggcctctattgccaagaaaatgtaggccgg 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  cagcaactccaccatcagccatggcctctattgccaagaaaatgtaggccgg 609
to top
>ref|XM_463717.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 855

 Score =  270 bits (136), Expect = 3e-69
 Identities = 226/256 (88%)
 Strand = Plus / Minus

                                                                       
Query: 178 ttgtggcagcaacaacggcatttatcagtgtgccacggaacgaacccttctcgagctcat 237
           |||| ||||||||||||||||||||||| || |||||||| | ||||||||| ||||| |
Sbjct: 826 ttgtagcagcaacaacggcatttatcagcgtcccacggaatgcacccttctcaagctctt 767

                                                                       
Query: 238 gaacaccagctatcgtagttcctgcaggggaagtgacctgatccttcagctggcctggat 297
           | |  |||| ||| || |||||||| ||||||||||||  |||||||||||| || ||||
Sbjct: 766 gtatcccagttatggtggttcctgccggggaagtgaccatatccttcagctgacccggat 707

                                                                       
Query: 298 gtttacccgtctcgctaaccatggttgcagcacctagaactgtctgagctgcaagaccaa 357
           |||| || |||| | | ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 706 gttttccagtcttgtttaccatggttgcagcaccaagaactgtctgagatgcaagaccaa 647

                                                                       
Query: 358 gagcaagatcccgaggaagcccagcagcaactccaccatcagccatggcctctattgcca 417
           | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 646 gtgcaagatcccgaggaagaccagcagcaactccaccatcagccatggcctctattgcta 587

                           
Query: 418 agaaaatgtaggccgg 433
           ||||||| || |||||
Sbjct: 586 agaaaatataagccgg 571
to top
>dbj|AK070184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E03, full
           insert sequence
          Length = 1210

 Score =  270 bits (136), Expect = 3e-69
 Identities = 226/256 (88%)
 Strand = Plus / Minus

                                                                       
Query: 178 ttgtggcagcaacaacggcatttatcagtgtgccacggaacgaacccttctcgagctcat 237
           |||| ||||||||||||||||||||||| || |||||||| | ||||||||| ||||| |
Sbjct: 996 ttgtagcagcaacaacggcatttatcagcgtcccacggaatgcacccttctcaagctctt 937

                                                                       
Query: 238 gaacaccagctatcgtagttcctgcaggggaagtgacctgatccttcagctggcctggat 297
           | |  |||| ||| || |||||||| ||||||||||||  |||||||||||| || ||||
Sbjct: 936 gtatcccagttatggtggttcctgccggggaagtgaccatatccttcagctgacccggat 877

                                                                       
Query: 298 gtttacccgtctcgctaaccatggttgcagcacctagaactgtctgagctgcaagaccaa 357
           |||| || |||| | | ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 876 gttttccagtcttgtttaccatggttgcagcaccaagaactgtctgagatgcaagaccaa 817

                                                                       
Query: 358 gagcaagatcccgaggaagcccagcagcaactccaccatcagccatggcctctattgcca 417
           | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 816 gtgcaagatcccgaggaagaccagcagcaactccaccatcagccatggcctctattgcta 757

                           
Query: 418 agaaaatgtaggccgg 433
           ||||||| || |||||
Sbjct: 756 agaaaatataagccgg 741
to top
>dbj|AK067368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L18, full
            insert sequence
          Length = 1321

 Score =  270 bits (136), Expect = 3e-69
 Identities = 226/256 (88%)
 Strand = Plus / Minus

                                                                        
Query: 178  ttgtggcagcaacaacggcatttatcagtgtgccacggaacgaacccttctcgagctcat 237
            |||| ||||||||||||||||||||||| || |||||||| | ||||||||| ||||| |
Sbjct: 1070 ttgtagcagcaacaacggcatttatcagcgtcccacggaatgcacccttctcaagctctt 1011

                                                                        
Query: 238  gaacaccagctatcgtagttcctgcaggggaagtgacctgatccttcagctggcctggat 297
            | |  |||| ||| || |||||||| ||||||||||||  |||||||||||| || ||||
Sbjct: 1010 gtatcccagttatggtggttcctgccggggaagtgaccatatccttcagctgacccggat 951

                                                                        
Query: 298  gtttacccgtctcgctaaccatggttgcagcacctagaactgtctgagctgcaagaccaa 357
            |||| || |||| | | ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 950  gttttccagtcttgtttaccatggttgcagcaccaagaactgtctgagatgcaagaccaa 891

                                                                        
Query: 358  gagcaagatcccgaggaagcccagcagcaactccaccatcagccatggcctctattgcca 417
            | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 890  gtgcaagatcccgaggaagaccagcagcaactccaccatcagccatggcctctattgcta 831

                            
Query: 418  agaaaatgtaggccgg 433
            ||||||| || |||||
Sbjct: 830  agaaaatataagccgg 815
to top
>gb|DQ026301.1| Zea mays pyrroline 5-carboxylate reductase (p5cr) mRNA, complete
           cds
          Length = 1178

 Score =  222 bits (112), Expect = 7e-55
 Identities = 217/252 (86%)
 Strand = Plus / Minus

                                                                       
Query: 182 ggcagcaacaacggcatttatcagtgtgccacggaacgaacccttctcgagctcatgaac 241
           |||||||||||| ||| | ||||| || |||||||| |  |||||||||||||| |||| 
Sbjct: 916 ggcagcaacaacagcactaatcagcgttccacggaatgcgcccttctcgagctcctgaat 857

                                                                       
Query: 242 accagctatcgtagttcctgcaggggaagtgacctgatccttcagctggcctggatgttt 301
            || || || ||||| ||||| || ||||| |||||||| ||||| || |||||||||||
Sbjct: 856 cccggcaatggtagtacctgctggagaagtaacctgatctttcagttgccctggatgttt 797

                                                                       
Query: 302 acccgtctcgctaaccatggttgcagcacctagaactgtctgagctgcaagaccaagagc 361
            || |||| ||| ||||| ||||||||||| |||||||| |||| |||||||||||| ||
Sbjct: 796 gcctgtctggctcaccatagttgcagcaccaagaactgtttgagatgcaagaccaagggc 737

                                                                       
Query: 362 aagatcccgaggaagcccagcagcaactccaccatcagccatggcctctattgccaagaa 421
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 736 aaggtcccgaggaagcccagcagcaactccaccatcagccatggcctctattgctaggaa 677

                       
Query: 422 aatgtaggccgg 433
            || ||||||||
Sbjct: 676 gatataggccgg 665
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  147 bits (74), Expect = 3e-32
 Identities = 92/98 (93%)
 Strand = Plus / Plus

                                                                            
Query: 336      actgtctgagctgcaagaccaagagcaagatcccgaggaagcccagcagcaactccacca 395
                |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 41711481 actgtctgagatgcaagaccaagtgcaagatcccgaggaagaccagcagcaactccacca 41711540

                                                      
Query: 396      tcagccatggcctctattgccaagaaaatgtaggccgg 433
                |||||||||||||||||||| |||||||| || |||||
Sbjct: 41711541 tcagccatggcctctattgctaagaaaatataagccgg 41711578



 Score =  127 bits (64), Expect = 3e-26
 Identities = 136/160 (85%)
 Strand = Plus / Plus

                                                                            
Query: 178      ttgtggcagcaacaacggcatttatcagtgtgccacggaacgaacccttctcgagctcat 237
                |||| ||||||||||||||||||||||| || |||||||| | ||||||||| ||||| |
Sbjct: 41711249 ttgtagcagcaacaacggcatttatcagcgtcccacggaatgcacccttctcaagctctt 41711308

                                                                            
Query: 238      gaacaccagctatcgtagttcctgcaggggaagtgacctgatccttcagctggcctggat 297
                | |  |||| ||| || |||||||| ||||||||||||  |||||||||||| || ||||
Sbjct: 41711309 gtatcccagttatggtggttcctgccggggaagtgaccatatccttcagctgacccggat 41711368

                                                        
Query: 298      gtttacccgtctcgctaaccatggttgcagcacctagaac 337
                |||| || |||| | | ||||||||||||||||| |||||
Sbjct: 41711369 gttttccagtcttgtttaccatggttgcagcaccaagaac 41711408
to top
>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0466H10
          Length = 176530

 Score =  147 bits (74), Expect = 3e-32
 Identities = 92/98 (93%)
 Strand = Plus / Plus

                                                                          
Query: 336    actgtctgagctgcaagaccaagagcaagatcccgaggaagcccagcagcaactccacca 395
              |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 127083 actgtctgagatgcaagaccaagtgcaagatcccgaggaagaccagcagcaactccacca 127142

                                                    
Query: 396    tcagccatggcctctattgccaagaaaatgtaggccgg 433
              |||||||||||||||||||| |||||||| || |||||
Sbjct: 127143 tcagccatggcctctattgctaagaaaatataagccgg 127180



 Score =  127 bits (64), Expect = 3e-26
 Identities = 136/160 (85%)
 Strand = Plus / Plus

                                                                          
Query: 178    ttgtggcagcaacaacggcatttatcagtgtgccacggaacgaacccttctcgagctcat 237
              |||| ||||||||||||||||||||||| || |||||||| | ||||||||| ||||| |
Sbjct: 126851 ttgtagcagcaacaacggcatttatcagcgtcccacggaatgcacccttctcaagctctt 126910

                                                                          
Query: 238    gaacaccagctatcgtagttcctgcaggggaagtgacctgatccttcagctggcctggat 297
              | |  |||| ||| || |||||||| ||||||||||||  |||||||||||| || ||||
Sbjct: 126911 gtatcccagttatggtggttcctgccggggaagtgaccatatccttcagctgacccggat 126970

                                                      
Query: 298    gtttacccgtctcgctaaccatggttgcagcacctagaac 337
              |||| || |||| | | ||||||||||||||||| |||||
Sbjct: 126971 gttttccagtcttgtttaccatggttgcagcaccaagaac 127010
to top
>emb|X62842.1|PSPROCRNA P.sativum proC mRNA for d1-pyrroline carboxylate reductase
          Length = 1250

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 182 ggcagcaacaacggcatttatcagtgtgccacggaa 217
           |||||||||||| ||||| |||||||| ||||||||
Sbjct: 832 ggcagcaacaacagcattcatcagtgttccacggaa 797



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 360 gcaagatcccgaggaagcccagcagcaactccaccatcagccatggcctctattgc 415
           |||||||| || || || ||||| || ||||| ||||||||||  |||||||||||
Sbjct: 654 gcaagatcacgcggtagaccagctgctactcctccatcagccagagcctctattgc 599
to top
>emb|X16352.1|GMP5CR Glycine max mRNA for pyrroline-5-carboxylate reductase
          Length = 1109

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 183 gcagcaacaacggcatttatcagtgtgccacggaac 218
           ||||||||||| ||||| |||||||| |||||||||
Sbjct: 848 gcagcaacaacagcattcatcagtgttccacggaac 813
to top
>ref|NM_137927.1| Drosophila melanogaster CG9871-RA (CG9871), mRNA
          Length = 1194

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 aagtgacctgatccttcagctgg 290
           |||||||||||||||||||||||
Sbjct: 765 aagtgacctgatccttcagctgg 743
to top
>gb|AY089455.1| Drosophila melanogaster AT26853 full insert cDNA
          Length = 1169

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 aagtgacctgatccttcagctgg 290
           |||||||||||||||||||||||
Sbjct: 765 aagtgacctgatccttcagctgg 743
to top
>gb|AC099036.1| Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone
             BACR34K16, complete sequence
          Length = 180361

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 268   aagtgacctgatccttcagctgg 290
             |||||||||||||||||||||||
Sbjct: 29320 aagtgacctgatccttcagctgg 29298
to top
>gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, BAC clone
             BACR04G19, complete sequence
          Length = 181955

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 268   aagtgacctgatccttcagctgg 290
             |||||||||||||||||||||||
Sbjct: 15004 aagtgacctgatccttcagctgg 15026
to top
>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete
             sequence
          Length = 299331

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 268   aagtgacctgatccttcagctgg 290
             |||||||||||||||||||||||
Sbjct: 67481 aagtgacctgatccttcagctgg 67503
to top
>gb|AC102614.11| Mus musculus chromosome 8, clone RP23-421L10, complete sequence
          Length = 197194

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    taaatttataggactaatttt 156
              |||||||||||||||||||||
Sbjct: 133390 taaatttataggactaatttt 133370
to top
>dbj|BS000098.1| Pan troglodytes chromosome 22 clone:CH251-269G16, map 22, complete
             sequences
          Length = 44745

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 340   tctgagctgcaagaccaagag 360
             |||||||||||||||||||||
Sbjct: 28973 tctgagctgcaagaccaagag 28993
to top
>emb|BX470116.5| Zebrafish DNA sequence from clone DKEY-244B23 in linkage group 4,
             complete sequence
          Length = 195795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aaatatctcataaatcatgtc 90
             |||||||||||||||||||||
Sbjct: 29314 aaatatctcataaatcatgtc 29294
to top
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 405     gcctctattgccaagaaaat 424
               ||||||||||||||||||||
Sbjct: 1250649 gcctctattgccaagaaaat 1250630
to top
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 356    aagagcaagatcccgaggaagccc 379
              ||||||| ||||||||||||||||
Sbjct: 267317 aagagcatgatcccgaggaagccc 267340
to top
>gb|AC087363.17| Homo sapiens chromosome 8, clone RP11-529P14, complete sequence
          Length = 174028

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 226   tctcgagctcatgaacaccagcta 249
             |||||||||| |||||||||||||
Sbjct: 36448 tctcgagctcctgaacaccagcta 36471
to top
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 322     ttgcagcacctagaactgtctgagctgc 349
               |||||||||| ||||||||||| |||||
Sbjct: 2212974 ttgcagcaccaagaactgtctgggctgc 2213001
to top
>gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence
          Length = 129285

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   ccgaggaagcccagcagcaa 387
             ||||||||||||||||||||
Sbjct: 47045 ccgaggaagcccagcagcaa 47026
to top
>emb|AL139387.12| Human DNA sequence from clone RP11-12I14 on chromosome 6, complete
             sequence
          Length = 83352

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    tagtttcgagtctgagatttaaat 73
             ||||||| ||||||||||||||||
Sbjct: 56984 tagtttccagtctgagatttaaat 56961
to top
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    agctggcctggatgtttacc 304
              ||||||||||||||||||||
Sbjct: 351237 agctggcctggatgtttacc 351256
to top
>gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, complete sequence
          Length = 191464

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    caccatcagccatggcctct 410
              ||||||||||||||||||||
Sbjct: 171545 caccatcagccatggcctct 171564
to top
>gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, complete sequence
          Length = 173602

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   caccatcagccatggcctct 410
             ||||||||||||||||||||
Sbjct: 52390 caccatcagccatggcctct 52409
to top
>gb|AC159628.2| Mus musculus BAC clone RP24-206C4 from chromosome 12, complete sequence
          Length = 161791

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tagatagaccaggaaaatat 40
             ||||||||||||||||||||
Sbjct: 61383 tagatagaccaggaaaatat 61364
to top
>gb|AC146885.3| Callithrix jacchus clone CH259-349L5, complete sequence
          Length = 213940

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   gcctctattgccaagaaaat 424
             ||||||||||||||||||||
Sbjct: 95741 gcctctattgccaagaaaat 95722
to top
>gb|AF084032.1|AF084032 Rhodobacter sphaeroides strain 2.4.1T quinol oxidase subunit I QxtA
           (qxtA) and quinol oxidase subunit II QxtB (qxtB) genes,
           complete cds
          Length = 2688

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 356 aagagcaagatcccgaggaagccc 379
           ||||||| ||||||||||||||||
Sbjct: 471 aagagcatgatcccgaggaagccc 448
to top
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    agctggcctggatgtttacc 304
              ||||||||||||||||||||
Sbjct: 404428 agctggcctggatgtttacc 404447
to top
>emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chromosome X, complete
             sequence
          Length = 159365

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ggaaaatatgttgacaacta 51
             ||||||||||||||||||||
Sbjct: 31948 ggaaaatatgttgacaacta 31967
to top
>gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, complete sequence
          Length = 235239

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   gcagcacctagaactgtctg 343
             ||||||||||||||||||||
Sbjct: 20972 gcagcacctagaactgtctg 20991
to top
>gb|AC084416.36| Mus musculus strain C57BL/6J chromosome 5 clone rp23-430i3, complete
             sequence
          Length = 183540

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   gcagcacctagaactgtctg 343
             ||||||||||||||||||||
Sbjct: 42083 gcagcacctagaactgtctg 42064
to top
>dbj|AB056453.1| Vigna unguiculata VuP5CR mRNA, complete cds
          Length = 1096

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 183 gcagcaacaacggcatttatcagtgtgccacggaac 218
           ||||||||||| ||||| |||||||| || ||||||
Sbjct: 895 gcagcaacaacagcattcatcagtgttccgcggaac 860


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,965,701
Number of Sequences: 3902068
Number of extensions: 3965701
Number of successful extensions: 71388
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71249
Number of HSP's gapped (non-prelim): 137
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top