ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ297421.1|DCA297421 Daucus carota partial mRNA for putative... 56 9e-05
2gb|AY921641.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR4... 54 4e-04
3emb|BX814348.1|CNS0ABZY Arabidopsis thaliana Full-length cDNA Co... 50 0.006
4ref|NM_106319.3| Arabidopsis thaliana OPR2; 12-oxophytodienoate ... 46 0.089
5ref|NM_106320.2| Arabidopsis thaliana heat shock protein binding... 46 0.089
6gb|BT025251.1| Arabidopsis thaliana At1g76690 mRNA, complete cds 46 0.089
7emb|BX813593.1|CNS0ACEC Arabidopsis thaliana Full-length cDNA Co... 46 0.089
8emb|BX816752.1|CNS0ABN0 Arabidopsis thaliana Full-length cDNA Co... 46 0.089
9emb|BX816748.1|CNS0ABM5 Arabidopsis thaliana Full-length cDNA Co... 46 0.089
10gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28... 46 0.089
11dbj|AK117738.1| Arabidopsis thaliana At1g76690 mRNA for putative... 46 0.089
12gb|U92460.1|ATU92460 Arabidopsis thaliana 12-oxophytodienoate re... 46 0.089
13ref|NM_202428.1| Arabidopsis thaliana OPR1; 12-oxophytodienoate ... 42 1.4
14ref|NM_106318.3| Arabidopsis thaliana OPR1; 12-oxophytodienoate ... 42 1.4
15gb|BT020365.1| Arabidopsis thaliana At1g76680 gene, complete cds 42 1.4
16ref|XM_470425.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
18emb|AL022288.1|CEZK1025 Caenorhabditis elegans Cosmid ZK1025, co... 42 1.4
19emb|Z81477.1|CEC27C7 Caenorhabditis elegans Cosmid C27C7, comple... 42 1.4
20emb|AL163279.2|HS21C079 Homo sapiens chromosome 21 segment HS21C079 42 1.4
21emb|Y10617.1|AT12OXOPR A.thaliana mRNA for 12-oxo-phytodienoate ... 42 1.4
22emb|Y10253.1|OSPANC O.sativa panC gene 42 1.4
23gb|AF064861.5| Homo sapiens chromosome 21 clone RP1-128M19 map q... 42 1.4
24gb|AC157524.2| Pan troglodytes BAC clone CH251-516K17 from chrom... 42 1.4
25gb|AY074874.1| Arabidopsis thaliana At1g76680/F28O16_5 mRNA, com... 42 1.4
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
27emb|BX816218.1|CNS0ABRK Arabidopsis thaliana Full-length cDNA Co... 42 1.4
28emb|BX841572.1|CNS09YFC Arabidopsis thaliana Full-length cDNA Co... 42 1.4
29gb|AY087801.1| Arabidopsis thaliana clone 38527 mRNA, complete s... 42 1.4
30gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom... 42 1.4
31gb|AF129408.4| Homo sapiens chromosome 21 clone RP1-31K18 map q2... 42 1.4
32dbj|BS000164.1| Pan troglodytes chromosome 22 clone:RP43-027I07,... 42 1.4
33dbj|BS000156.1| Pan troglodytes chromosome 22 clone:RP43-145H09,... 42 1.4
34dbj|AK104812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
35emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.4
36dbj|AK066656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
37emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.5
38ref|XM_735639.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.5
39dbj|AB236163.1| Pichia minuta ADE1 gene for Phosphoribosyl-amino... 40 5.5
40emb|CR617973.1| full-length cDNA clone CS0DI022YI22 of Placenta ... 40 5.5
41dbj|AK022877.1| Homo sapiens cDNA FLJ12815 fis, clone NT2RP2002546 40 5.5
42gb|AC154731.2| Mus musculus BAC clone RP23-121M22 from chromosom... 40 5.5
43gb|AC154361.2| Mus musculus BAC clone RP23-170I24 from chromosom... 40 5.5
44gb|AC021088.5| Homo sapiens chromosome 5 clone CTD-2144A5, compl... 40 5.5
45dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, r... 40 5.5
48gb|AC017099.11| Homo sapiens BAC clone RP11-542D13 from 2, compl... 40 5.5
49gb|AC013272.5| Homo sapiens BAC clone RP11-401C13 from 2, comple... 40 5.5
50gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, comple... 40 5.5
51gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, comple... 40 5.5
52gb|AC148026.2| Homo sapiens BAC clone RP11-625I24 from 2, comple... 40 5.5
53gb|AC013734.4|AC013734 Homo sapiens BAC clone RP11-557B9 from Y,... 40 5.5
54dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
55dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
56dbj|AK121554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
57gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, com... 40 5.5
58gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 40 5.5
59gb|BT001647.1| Drosophila melanogaster RE43027 full insert cDNA 40 5.5
60gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
61emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126... 40 5.5
62gb|AF009314.1|AF009314 Homo sapiens clone TUA8 Cri-du-chat regio... 40 5.5 
>emb|AJ297421.1|DCA297421 Daucus carota partial mRNA for putative 12-oxophytodienoate
           reductase (opr2 gene)
          Length = 261

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 239 ctcaaaccgctttggcaggtctgggtttgccaggaa 274
           ||||||||||||||| || |||||||||||||||||
Sbjct: 197 ctcaaaccgctttggtagatctgggtttgccaggaa 162
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>gb|AY921641.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR4) mRNA, complete cds
          Length = 1833

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 154  cgaggaaggggtaatcggtgtatccaacgatggggtccgaggtgtagaagg 204
            |||| |||||||| || |||||||||| || |||||| |||||||||||||
Sbjct: 1750 cgagaaaggggtagtctgtgtatccaatgacggggtcggaggtgtagaagg 1700
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>emb|BX814348.1|CNS0ABZY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB69ZE10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1221

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 151  attcgaggaaggggtaatcggtgtatccaacga 183
            |||||||||| |||||||||||||| |||||||
Sbjct: 1167 attcgaggaaagggtaatcggtgtaaccaacga 1135
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>ref|NM_106319.3| Arabidopsis thaliana OPR2; 12-oxophytodienoate reductase AT1G76690
            (OPR2) mRNA, complete cds
          Length = 1573

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 1108 aaccgctttggcaggtctgggtt 1086
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>ref|NM_106320.2| Arabidopsis thaliana heat shock protein binding / unfolded protein
            binding AT1G76700 mRNA, complete cds
          Length = 2266

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 1790 aaccgctttggcaggtctgggtt 1812
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>gb|BT025251.1| Arabidopsis thaliana At1g76690 mRNA, complete cds
          Length = 1125

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 1022 aaccgctttggcaggtctgggtt 1000
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>emb|BX813593.1|CNS0ACEC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB26ZH11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1264

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 1076 aaccgctttggcaggtctgggtt 1054
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>emb|BX816752.1|CNS0ABN0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZH10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1296

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 1108 aaccgctttggcaggtctgggtt 1086
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>emb|BX816748.1|CNS0ABM5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZG08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1226

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 1061 aaccgctttggcaggtctgggtt 1039
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>gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28O16 genomic sequence, complete
             sequence
          Length = 87684

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 243   aaccgctttggcaggtctgggtt 265
             |||||||||||||||||||||||
Sbjct: 17024 aaccgctttggcaggtctgggtt 17002



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 151   attcgaggaaggggtaatcggtgta 175
             |||||||||| ||||||||||||||
Sbjct: 15032 attcgaggaaagggtaatcggtgta 15008
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>dbj|AK117738.1| Arabidopsis thaliana At1g76690 mRNA for putative 12-oxophytodienoate
            reductase (OPR2), complete cds, clone: RAFL17-42-I17
          Length = 1313

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 1082 aaccgctttggcaggtctgggtt 1060
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>gb|U92460.1|ATU92460 Arabidopsis thaliana 12-oxophytodienoate reductase OPR1 and
            12-oxophytodienoate reductase OPR2 genes, complete cds
          Length = 7079

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 243  aaccgctttggcaggtctgggtt 265
            |||||||||||||||||||||||
Sbjct: 6618 aaccgctttggcaggtctgggtt 6596



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 4626 attcgaggaaagggtaatcggtgta 4602
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>ref|NM_202428.1| Arabidopsis thaliana OPR1; 12-oxophytodienoate reductase AT1G76680
            (OPR1) transcript variant AT1G76680.2 mRNA, complete cds
          Length = 1460

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 1253 attcgaggaaagggtaatcggtgta 1229
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>ref|NM_106318.3| Arabidopsis thaliana OPR1; 12-oxophytodienoate reductase AT1G76680
            (OPR1) transcript variant AT1G76680.1 mRNA, complete cds
          Length = 1451

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 1244 attcgaggaaagggtaatcggtgta 1220
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>gb|BT020365.1| Arabidopsis thaliana At1g76680 gene, complete cds
          Length = 1119

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 1108 attcgaggaaagggtaatcggtgta 1084
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>ref|XM_470425.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1220

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 333 tcgcggtcgtacccaccattggcta 357
           ||||||||||||||||||| |||||
Sbjct: 146 tcgcggtcgtacccaccatgggcta 170
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 333      tcgcggtcgtacccaccattggcta 357
                ||||||||||||||||||| |||||
Sbjct: 35561461 tcgcggtcgtacccaccatgggcta 35561485
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>emb|AL022288.1|CEZK1025 Caenorhabditis elegans Cosmid ZK1025, complete sequence
          Length = 40589

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     ggggttttggatatatttttt 22
             |||||||||||||||||||||
Sbjct: 13739 ggggttttggatatatttttt 13719
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>emb|Z81477.1|CEC27C7 Caenorhabditis elegans Cosmid C27C7, complete sequence
          Length = 22217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     ggggttttggatatatttttt 22
             |||||||||||||||||||||
Sbjct: 12470 ggggttttggatatatttttt 12450
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>emb|AL163279.2|HS21C079 Homo sapiens chromosome 21 segment HS21C079
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      ttttggatatattttttctta 26
              |||||||||||||||||||||
Sbjct: 138339 ttttggatatattttttctta 138319
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>emb|Y10617.1|AT12OXOPR A.thaliana mRNA for 12-oxo-phytodienoate reductase
          Length = 1311

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 1173 attcgaggaaagggtaatcggtgta 1149
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>emb|Y10253.1|OSPANC O.sativa panC gene
          Length = 1264

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 333 tcgcggtcgtacccaccattggcta 357
           ||||||||||||||||||| |||||
Sbjct: 163 tcgcggtcgtacccaccatgggcta 187
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>gb|AF064861.5| Homo sapiens chromosome 21 clone RP1-128M19 map q22.2, complete
             sequence
          Length = 135578

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     ttttggatatattttttctta 26
             |||||||||||||||||||||
Sbjct: 20536 ttttggatatattttttctta 20516
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>gb|AC157524.2| Pan troglodytes BAC clone CH251-516K17 from chromosome unknown, complete
              sequence
          Length = 204622

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      ttttggatatattttttctta 26
              |||||||||||||||||||||
Sbjct: 137662 ttttggatatattttttctta 137682
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>gb|AY074874.1| Arabidopsis thaliana At1g76680/F28O16_5 mRNA, complete cds
          Length = 1252

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 1178 attcgaggaaagggtaatcggtgta 1154
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 333      tcgcggtcgtacccaccattggcta 357
                ||||||||||||||||||| |||||
Sbjct: 35651533 tcgcggtcgtacccaccatgggcta 35651557
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>emb|BX816218.1|CNS0ABRK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH34ZH11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1237

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 1162 attcgaggaaagggtaatcggtgta 1138
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>emb|BX841572.1|CNS09YFC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH92ZF02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1165

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 151 attcgaggaaggggtaatcggtgta 175
           |||||||||| ||||||||||||||
Sbjct: 61  attcgaggaaagggtaatcggtgta 85
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>gb|AY087801.1| Arabidopsis thaliana clone 38527 mRNA, complete sequence
          Length = 1280

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 151  attcgaggaaggggtaatcggtgta 175
            |||||||||| ||||||||||||||
Sbjct: 1178 attcgaggaaagggtaatcggtgta 1154
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>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete
             sequence
          Length = 145290

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 333   tcgcggtcgtacccaccattggcta 357
             ||||||||||||||||||| |||||
Sbjct: 94424 tcgcggtcgtacccaccatgggcta 94448
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>gb|AF129408.4| Homo sapiens chromosome 21 clone RP1-31K18 map q22.2, complete sequence
          Length = 141843

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      ttttggatatattttttctta 26
              |||||||||||||||||||||
Sbjct: 131329 ttttggatatattttttctta 131309
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>dbj|BS000164.1| Pan troglodytes chromosome 22 clone:RP43-027I07, map 22, complete
              sequences
          Length = 152825

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      ttttggatatattttttctta 26
              |||||||||||||||||||||
Sbjct: 140351 ttttggatatattttttctta 140331
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>dbj|BS000156.1| Pan troglodytes chromosome 22 clone:RP43-145H09, map 22, complete
             sequences
          Length = 152714

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     ttttggatatattttttctta 26
             |||||||||||||||||||||
Sbjct: 23683 ttttggatatattttttctta 23663
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>dbj|AK104812.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G05, full
           insert sequence
          Length = 1160

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 333 tcgcggtcgtacccaccattggcta 357
           ||||||||||||||||||| |||||
Sbjct: 76  tcgcggtcgtacccaccatgggcta 100
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 296     gtcggtgtatccctcggtgatcaccttgc 324
               ||||||||| |||||| ||||||||||||
Sbjct: 1322892 gtcggtgtagccctcgatgatcaccttgc 1322920
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>dbj|AK066656.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072H13, full
           insert sequence
          Length = 1220

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 333 tcgcggtcgtacccaccattggcta 357
           ||||||||||||||||||| |||||
Sbjct: 148 tcgcggtcgtacccaccatgggcta 172
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 385     acggcagcaaccgctttggc 404
               ||||||||||||||||||||
Sbjct: 4817770 acggcagcaaccgctttggc 4817751
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>ref|XM_735639.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000787.04.0)
           partial mRNA
          Length = 903

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  ggatatattttttcttataa 29
           ||||||||||||||||||||
Sbjct: 813 ggatatattttttcttataa 794
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>dbj|AB236163.1| Pichia minuta ADE1 gene for
            Phosphoribosyl-amino-imidazolesuccinocarbozamide
            synthetase, complete cds
          Length = 2560

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  ttcagctctgcgccaacctc 241
            ||||||||||||||||||||
Sbjct: 1381 ttcagctctgcgccaacctc 1362
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>emb|CR617973.1| full-length cDNA clone CS0DI022YI22 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 865

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  atatattttttcttataaac 31
           ||||||||||||||||||||
Sbjct: 545 atatattttttcttataaac 526
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>dbj|AK022877.1| Homo sapiens cDNA FLJ12815 fis, clone NT2RP2002546
          Length = 2267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   atatattttttcttataaac 31
            ||||||||||||||||||||
Sbjct: 1946 atatattttttcttataaac 1927
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>gb|AC154731.2| Mus musculus BAC clone RP23-121M22 from chromosome 14, complete
             sequence
          Length = 215346

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   aaggaagaatctacatatat 146
             ||||||||||||||||||||
Sbjct: 54911 aaggaagaatctacatatat 54892
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>gb|AC154361.2| Mus musculus BAC clone RP23-170I24 from chromosome 14, complete sequence
          Length = 202760

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aaggaagaatctacatatat 146
              ||||||||||||||||||||
Sbjct: 195527 aaggaagaatctacatatat 195508
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>gb|AC021088.5| Homo sapiens chromosome 5 clone CTD-2144A5, complete sequence
          Length = 106129

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    atatattttttcttataaac 31
             ||||||||||||||||||||
Sbjct: 72906 atatattttttcttataaac 72925
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 385    acggcagcaaccgctttggcacca 408
              ||||||||||| ||||||||||||
Sbjct: 977746 acggcagcaacagctttggcacca 977769
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 319      ccttgcccccttcctcgcggtcgtaccc 346
                ||||| |||||||||| |||||||||||
Sbjct: 15175241 ccttgtccccttcctcccggtcgtaccc 15175268
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>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
              BACR03K23, complete sequence
          Length = 160346

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     gatatattttttcttataaa 30
              ||||||||||||||||||||
Sbjct: 143563 gatatattttttcttataaa 143544
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>gb|AC017099.11| Homo sapiens BAC clone RP11-542D13 from 2, complete sequence
          Length = 230426

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    attttttcttataaactgga 35
             ||||||||||||||||||||
Sbjct: 98404 attttttcttataaactgga 98423
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>gb|AC013272.5| Homo sapiens BAC clone RP11-401C13 from 2, complete sequence
          Length = 172705

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     attttttcttataaactgga 35
              ||||||||||||||||||||
Sbjct: 112776 attttttcttataaactgga 112757
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>gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, complete sequence
          Length = 191055

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    attttttcttataaactgga 35
             ||||||||||||||||||||
Sbjct: 90137 attttttcttataaactgga 90118
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>gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, complete sequence
          Length = 202084

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    attttttcttataaactgga 35
             ||||||||||||||||||||
Sbjct: 33613 attttttcttataaactgga 33594
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>gb|AC148026.2| Homo sapiens BAC clone RP11-625I24 from 2, complete sequence
          Length = 159856

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    attttttcttataaactgga 35
             ||||||||||||||||||||
Sbjct: 60619 attttttcttataaactgga 60600
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>gb|AC013734.4|AC013734 Homo sapiens BAC clone RP11-557B9 from Y, complete sequence
          Length = 180019

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    attttttcttataaactgga 35
             ||||||||||||||||||||
Sbjct: 60586 attttttcttataaactgga 60567
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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0043B10
          Length = 167399

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 319    ccttgcccccttcctcgcggtcgtaccc 346
              ||||| |||||||||| |||||||||||
Sbjct: 147207 ccttgtccccttcctcccggtcgtaccc 147234
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>dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0493G01
          Length = 167587

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 319   ccttgcccccttcctcgcggtcgtaccc 346
             ||||| |||||||||| |||||||||||
Sbjct: 28614 ccttgtccccttcctcccggtcgtaccc 28641
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>dbj|AK121554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033G12, full
            insert sequence
          Length = 1613

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 319  ccttgcccccttcctcgcggtcgtaccc 346
            ||||| |||||||||| |||||||||||
Sbjct: 1211 ccttgtccccttcctcccggtcgtaccc 1184
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>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence
          Length = 147102

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ctcttttctttttaatgaac 59
             ||||||||||||||||||||
Sbjct: 97711 ctcttttctttttaatgaac 97730
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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     gatatattttttcttataaa 30
              ||||||||||||||||||||
Sbjct: 235906 gatatattttttcttataaa 235887
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>gb|BT001647.1| Drosophila melanogaster RE43027 full insert cDNA
          Length = 2662

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   gatatattttttcttataaa 30
            ||||||||||||||||||||
Sbjct: 2299 gatatattttttcttataaa 2318
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 385    acggcagcaaccgctttggcacca 408
              ||||||||||| ||||||||||||
Sbjct: 977746 acggcagcaacagctttggcacca 977769
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>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 134217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 385    acggcagcaaccgctttggcacca 408
              ||||||||||| ||||||||||||
Sbjct: 115331 acggcagcaacagctttggcacca 115354
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>gb|AF009314.1|AF009314 Homo sapiens clone TUA8 Cri-du-chat region mRNA
          Length = 1484

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   atatattttttcttataaac 31
            ||||||||||||||||||||
Sbjct: 1144 atatattttttcttataaac 1125


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,227,615
Number of Sequences: 3902068
Number of extensions: 4227615
Number of successful extensions: 96104
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95849
Number of HSP's gapped (non-prelim): 255
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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