ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart42g11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y13189.1|HVWL3MRNA Hordeum vulgare mRNA for hypothetical protein, partial, clone WL3 Length = 438 Score = 381 bits (192), Expect = e-102 Identities = 192/192 (100%) Strand = Plus / Minus Query: 255 cctcaaggtgcgcagccatcgccttgttcatcggaggagggccgcatctcaagatctgga 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 cctcaaggtgcgcagccatcgccttgttcatcggaggagggccgcatctcaagatctgga 379 Query: 315 tgtcctcagcaggtgctggacagtgaattttaatcatatcctgggacacaaacccaacac 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 tgtcctcagcaggtgctggacagtgaattttaatcatatcctgggacacaaacccaacac 319 Query: 375 caccgttccagacttcaggaggctgattcaacacgtagaaaatcttgaagcggtcaggat 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 caccgttccagacttcaggaggctgattcaacacgtagaaaatcttgaagcggtcaggat 259 Query: 435 attcttcggcca 446 |||||||||||| Sbjct: 258 attcttcggcca 247
>dbj|AK103964.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F12, full insert sequence Length = 1266 Score = 240 bits (121), Expect = 3e-60 Identities = 193/217 (88%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct: 942 cttagaactggaactgcatctccttggtgtacccgagctcatcaaggtgcgcagccattg 883 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 ||||||||||||||||||| || || |||||||| || |||||||| ||||||||||| Sbjct: 882 ccttgttcatcggaggaggaccacacctcaagatttgaatgtcctcggcaggtgctggca 823 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | ||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 822 aatgagctttaatcatgtcctgtgacacaaacccaacgccaccgttccagacttcaggag 763 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcagg 432 |||||||||| || ||| | ||||| ||||| ||||| Sbjct: 762 gctgattcaagacatagtagatcttaaagcgatcagg 726
>dbj|AK071859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115I22, full insert sequence Length = 1298 Score = 240 bits (121), Expect = 3e-60 Identities = 193/217 (88%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct: 958 cttagaactggaactgcatctccttggtgtacccgagctcatcaaggtgcgcagccattg 899 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 ||||||||||||||||||| || || |||||||| || |||||||| ||||||||||| Sbjct: 898 ccttgttcatcggaggaggaccacacctcaagatttgaatgtcctcggcaggtgctggca 839 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | ||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 838 aatgagctttaatcatgtcctgtgacacaaacccaacgccaccgttccagacttcaggag 779 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcagg 432 |||||||||| || ||| | ||||| ||||| ||||| Sbjct: 778 gctgattcaagacatagtagatcttaaagcgatcagg 742
>dbj|AK058594.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H01, full insert sequence Length = 1271 Score = 240 bits (121), Expect = 3e-60 Identities = 193/217 (88%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct: 969 cttagaactggaactgcatctccttggtgtacccgagctcatcaaggtgcgcagccattg 910 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 ||||||||||||||||||| || || |||||||| || |||||||| ||||||||||| Sbjct: 909 ccttgttcatcggaggaggaccacacctcaagatttgaatgtcctcggcaggtgctggca 850 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | ||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 849 aatgagctttaatcatgtcctgtgacacaaacccaacgccaccgttccagacttcaggag 790 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcagg 432 |||||||||| || ||| | ||||| ||||| ||||| Sbjct: 789 gctgattcaagacatagtagatcttaaagcgatcagg 753
>gb|AY105771.1| Zea mays PCO074166 mRNA sequence Length = 1305 Score = 222 bits (112), Expect = 8e-55 Identities = 193/220 (87%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| | Sbjct: 967 cttagaactggaactgcatctcctttgtgtagttgagctcgtcaaggtgtgcagccatgg 908 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 ||||||||||||||||||| || ||||||| |||||| |||||||||||||| ||||||| Sbjct: 907 ccttgttcatcggaggaggaccacatctcaggatctgaatgtcctcagcaggcgctggac 848 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | ||| || ||||| |||| ||||||||||||||||||||||||||| ||||||| Sbjct: 847 aatgagattggatcatttccttagacacaaacccaacaccaccgttccagttctcaggag 788 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcaggata 435 ||||||||||||| ||| | ||||| |||||| ||||||| Sbjct: 787 gctgattcaacacatagtagatcttaaagcggccaggata 748
>gb|AF077372.1|AF077372 Zea mays cytochrome b5 reductase (NFR) mRNA, complete cds Length = 1147 Score = 222 bits (112), Expect = 8e-55 Identities = 193/220 (87%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| | Sbjct: 881 cttagaactggaactgcatctcctttgtgtagttgagctcgtcaaggtgtgcagccatgg 822 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 ||||||||||||||||||| || ||||||| |||||| |||||||||||||| ||||||| Sbjct: 821 ccttgttcatcggaggaggaccacatctcaggatctgaatgtcctcagcaggcgctggac 762 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | ||| || ||||| |||| ||||||||||||||||||||||||||| ||||||| Sbjct: 761 aatgagattggatcatttccttagacacaaacccaacaccaccgttccagttctcaggag 702 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcaggata 435 ||||||||||||| ||| | ||||| |||||| ||||||| Sbjct: 701 gctgattcaacacatagtagatcttaaagcggccaggata 662
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 141 bits (71), Expect = 2e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct: 34645675 cttagaactggaactgcatctccttggtgtacccgagctcatcaaggtgcgcagccattg 34645734 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctgga 314 ||||||||||||||||||| || || ||||||||||||| Sbjct: 34645735 ccttgttcatcggaggaggaccacacctcaagatctgga 34645773 Score = 99.6 bits (50), Expect = 8e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 314 atgtcctcagcaggtgctggacagtgaattttaatcatatcctgggacacaaacccaaca 373 |||||||| ||||||||||| | ||| ||||||||| ||||| |||||||||||||| Sbjct: 34645884 atgtcctcggcaggtgctggcaaatgagctttaatcatgtcctgtgacacaaacccaacg 34645943 Query: 374 ccaccgttccagacttcaggaggctg 399 |||||||||||||||||||||||||| Sbjct: 34645944 ccaccgttccagacttcaggaggctg 34645969
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07 Length = 172483 Score = 141 bits (71), Expect = 2e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct: 97692 cttagaactggaactgcatctccttggtgtacccgagctcatcaaggtgcgcagccattg 97751 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctgga 314 ||||||||||||||||||| || || ||||||||||||| Sbjct: 97752 ccttgttcatcggaggaggaccacacctcaagatctgga 97790 Score = 99.6 bits (50), Expect = 8e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 314 atgtcctcagcaggtgctggacagtgaattttaatcatatcctgggacacaaacccaaca 373 |||||||| ||||||||||| | ||| ||||||||| ||||| |||||||||||||| Sbjct: 97901 atgtcctcggcaggtgctggcaaatgagctttaatcatgtcctgtgacacaaacccaacg 97960 Query: 374 ccaccgttccagacttcaggaggctg 399 |||||||||||||||||||||||||| Sbjct: 97961 ccaccgttccagacttcaggaggctg 97986
>gb|AY290735.1| Triticum aestivum cytochrome b5 reductase isoform II-like mRNA, partial sequence Length = 472 Score = 131 bits (66), Expect = 2e-27 Identities = 153/182 (84%) Strand = Plus / Minus Query: 212 gaaacttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagcc 271 ||||| ||||||||||||||||||||||| ||||| || || || || |||| |||||| Sbjct: 190 gaaacctagaactggaactgcatctccttggtgtagccaaggtcatccaggtttgcagcc 131 Query: 272 atcgccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgct 331 || || ||||||||||||||||| ||||||||||| | ||| ||||| | ||||| ||| Sbjct: 130 atggctttgttcatcggaggaggcccgcatctcaatacctgaatgtcggcggcaggcgct 71 Query: 332 ggacagtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttca 391 || |||||| || ||||| |||| |||||||||||||||||||| | |||||||||| Sbjct: 70 gggcagtgagcttggatcatttcctttgacacaaacccaacaccaccatcccagacttca 11 Query: 392 gg 393 || Sbjct: 10 gg 9
>dbj|AK105459.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-E07, full insert sequence Length = 1233 Score = 127 bits (64), Expect = 3e-26 Identities = 181/220 (82%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||| ||||||||||| ||||| ||||| || || | ||| ||||| ||||||| | Sbjct: 961 cttagaattggaactgcatttccttcgtgtagccaagattctccaggtgttcagccatgg 902 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 | |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||| || | Sbjct: 901 ctttgttcatgggaggaggtccgcatctcaatatctgaatgtcagcagcaggtgccgggc 842 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | || ||| ||||| ||| |||||||||||||||||||| ||||||| ||| |||| Sbjct: 841 aatgggtttggatcatttccattgacacaaacccaacaccaccattccagatttctggag 782 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcaggata 435 ||||||| || || ||| | ||||||||||| || ||||| Sbjct: 781 gctgatttaatacatagtatatcttgaagcgatcgggata 742
>dbj|AK073699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059L16, full insert sequence Length = 1218 Score = 127 bits (64), Expect = 3e-26 Identities = 181/220 (82%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||| ||||||||||| ||||| ||||| || || | ||| ||||| ||||||| | Sbjct: 965 cttagaattggaactgcatttccttcgtgtagccaagattctccaggtgttcagccatgg 906 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 | |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||| || | Sbjct: 905 ctttgttcatgggaggaggtccgcatctcaatatctgaatgtcagcagcaggtgccgggc 846 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | || ||| ||||| ||| |||||||||||||||||||| ||||||| ||| |||| Sbjct: 845 aatgggtttggatcatttccattgacacaaacccaacaccaccattccagatttctggag 786 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcaggata 435 ||||||| || || ||| | ||||||||||| || ||||| Sbjct: 785 gctgatttaatacatagtatatcttgaagcgatcgggata 746
>dbj|AK071883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046O12, full insert sequence Length = 1359 Score = 127 bits (64), Expect = 3e-26 Identities = 181/220 (82%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||| ||||||||||| ||||| ||||| || || | ||| ||||| ||||||| | Sbjct: 967 cttagaattggaactgcatttccttcgtgtagccaagattctccaggtgttcagccatgg 908 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 | |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||| || | Sbjct: 907 ctttgttcatgggaggaggtccgcatctcaatatctgaatgtcagcagcaggtgccgggc 848 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | || ||| ||||| ||| |||||||||||||||||||| ||||||| ||| |||| Sbjct: 847 aatgggtttggatcatttccattgacacaaacccaacaccaccattccagatttctggag 788 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcaggata 435 ||||||| || || ||| | ||||||||||| || ||||| Sbjct: 787 gctgatttaatacatagtatatcttgaagcgatcgggata 748
>gb|AY110029.1| Zea mays CL1597_2 mRNA sequence Length = 823 Score = 119 bits (60), Expect = 8e-24 Identities = 171/208 (82%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||||||||||||||||||||| ||||| || || || || |||||||| ||||| | Sbjct: 553 cttagaactggaactgcatctccttcgtgtagccaaggtcgtccaggtgcgcggccatgg 494 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 | |||||||| |||||||| || |||| ||| | ||| ||||| | ||||| ||||| | Sbjct: 493 ctttgttcatgggaggaggcccacatcgcaatacctgaatgtcggcggcaggcgctgggc 434 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | ||| | | ||||| |||| ||||| ||||| || ||||||| |||||||||||||| Sbjct: 433 aatgagtctggatcatttccttcgacacgaacccgacgccaccgtcccagacttcaggag 374 Query: 396 gctgattcaacacgtagaaaatcttgaa 423 |||||||||| || ||| | |||||||| Sbjct: 373 gctgattcaagacatagtagatcttgaa 346
>gb|AF205603.1|AF205603 Zea mays cytochrome b5 reductase isoform II (NFR II) mRNA, complete cds Length = 1370 Score = 111 bits (56), Expect = 2e-21 Identities = 179/220 (81%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 |||||||||| |||||||||||||| ||||| || || | || |||||||| ||||| | Sbjct: 1189 cttagaactgaaactgcatctccttcgtgtagccaaggccgtccaggtgcgcggccatgg 1130 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggac 335 | |||||||| |||||||| || |||| ||| | ||| ||||| | ||||| ||||| | Sbjct: 1129 ctttgttcatgggaggaggtccacatcgcaatacctgaatgtcggcggcaggcgctgggc 1070 Query: 336 agtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggag 395 | ||| | | ||||| |||| ||||| ||||| || ||||||| |||||||||||||| Sbjct: 1069 aatgagtctggatcatttccttcgacacgaacccgacgccaccgtcccagacttcaggag 1010 Query: 396 gctgattcaacacgtagaaaatcttgaagcggtcaggata 435 |||||||||| || ||| | |||||||| || |||||||| Sbjct: 1009 gctgattcaagacatagtagatcttgaaacgatcaggata 970
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02, complete sequence Length = 138584 Score = 73.8 bits (37), Expect = 4e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||| ||||||||||| ||||| ||||| || || | ||| ||||| ||||||| | Sbjct: 89055 cttagaattggaactgcatttccttcgtgtagccaagattctccaggtgttcagccatgg 88996 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctg 312 | |||||||| |||||||| ||||||||||| ||||| Sbjct: 88995 ctttgttcatgggaggaggtccgcatctcaatatctg 88959 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 359 gacacaaacccaacaccaccgttccagacttcaggaggctg 399 |||||||||||||||||||| ||||||| ||| |||||||| Sbjct: 88773 gacacaaacccaacaccaccattccagatttctggaggctg 88733
>gb|AY819699.1| Vernicia fordii NADH:cytochrome b5 reductase (CBR1A) mRNA, complete cds Length = 843 Score = 73.8 bits (37), Expect = 4e-10 Identities = 124/153 (81%) Strand = Plus / Minus Query: 260 aggtgcgcagccatcgccttgttcatcggaggagggccgcatctcaagatctggatgtcc 319 ||||| |||||||| ||||||||||| || || || || ||||||| |||||||| || Sbjct: 800 aggtgagcagccatggccttgttcataggtggtggtccacatctcagaatctggatatca 741 Query: 320 tcagcaggtgctggacagtgaattttaatcatatcctgggacacaaacccaacaccaccg 379 ||||| || || |||||| ||| |||||| |||| || ||||| ||||| ||||| Sbjct: 740 gatgcaggagcagggcagtgattttcaatcatttcctttgatacaaagccaacgccacca 681 Query: 380 ttccagacttcaggaggctgattcaacacgtag 412 | ||| |||||||||||||||||||| |||||| Sbjct: 680 tcccatacttcaggaggctgattcaaaacgtag 648
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 4e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 216 cttagaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcg 275 ||||||| ||||||||||| ||||| ||||| || || | ||| ||||| ||||||| | Sbjct: 23885220 cttagaattggaactgcatttccttcgtgtagccaagattctccaggtgttcagccatgg 23885161 Query: 276 ccttgttcatcggaggagggccgcatctcaagatctg 312 | |||||||| |||||||| ||||||||||| ||||| Sbjct: 23885160 ctttgttcatgggaggaggtccgcatctcaatatctg 23885124 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 359 gacacaaacccaacaccaccgttccagacttcaggaggctg 399 |||||||||||||||||||| ||||||| ||| |||||||| Sbjct: 23884938 gacacaaacccaacaccaccattccagatttctggaggctg 23884898
>gb|AF542186.1| Triticum aestivum cytochrome b5 reductase isoform II-like mRNA, complete sequence Length = 803 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 370 aacaccaccgttccagacttcaggaggctgattcaacacgtagaaaatcttgaagcggtc 429 ||||||||| | |||||||||||| |||||||||| || ||| | ||||||||||| || Sbjct: 714 aacaccaccatcccagacttcaggtggctgattcaggacatagtagatcttgaagcgatc 655 Query: 430 aggata 435 |||||| Sbjct: 654 aggata 649
>ref|NM_121783.2| Arabidopsis thaliana ATCBR AT5G17770 (ATCBR) mRNA, complete cds Length = 1291 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 997 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 938 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 937 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 878 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 877 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 818 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 817 ggttcaaaacatagaa 802
>gb|AY072482.1| Arabidopsis thaliana NADH-cytochrome b5 reductase (MVA3.13) mRNA, complete cds Length = 630 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 493 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 434 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 433 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 374 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 373 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 314 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 313 ggttcaaaacatagaa 298
>gb|AY059822.1| Arabidopsis thaliana NADH-cytochrome b5 reductase (MVA3.13) mRNA, complete cds Length = 1396 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 1108 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 1049 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 1048 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 989 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 988 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 929 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 928 ggttcaaaacatagaa 913
>emb|BX829520.1|CNS0A1GE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1057 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 843 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 784 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 783 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 724 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 723 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 664 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 663 ggttcaaaacatagaa 648
>emb|BX829509.1|CNS0A1EP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1037 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 838 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 779 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 778 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 719 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 718 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 659 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 658 ggttcaaaacatagaa 643
>emb|BX829414.1|CNS0A18I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB11ZH05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1132 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 877 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 818 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 817 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 758 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 757 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 698 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 697 ggttcaaaacatagaa 682
>emb|BX832371.1|CNS0A164 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH68ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1123 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 981 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 922 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 921 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 862 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 861 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 802 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 801 ggttcaaaacatagaa 786
>gb|AY085728.1| Arabidopsis thaliana clone 17432 mRNA, complete sequence Length = 1206 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 997 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 938 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 937 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 878 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 877 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 818 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 817 ggttcaaaacatagaa 802
>dbj|AB007799.1| Arabidopsis thaliana mRNA for NADH-cytochrome b5 reductase, complete cds Length = 1079 Score = 56.0 bits (28), Expect = 1e-04 Identities = 154/196 (78%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 926 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 867 Query: 279 tgttcatcggaggagggccgcatctcaagatctggatgtcctcagcaggtgctggacagt 338 ||||||| || || || |||||||| | |||||| || || |||||||| || || | Sbjct: 866 tgttcattggcggtggtccgcatcttaggatctgaatatcagatgcaggtgcagggcaat 807 Query: 339 gaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcaggaggct 398 || | | |||||| |||| || ||||| ||||||||||| | ||| ||||| ||||||| Sbjct: 806 gagtctgaatcatttcctttgatacaaatccaacaccaccatcccatacttccggaggct 747 Query: 399 gattcaacacgtagaa 414 | ||||| || ||||| Sbjct: 746 ggttcaaaacatagaa 731
>emb|AL138720.19| Human DNA sequence from clone RP11-146I2 on chromosome 6 Contains a novel gene, the 3' end of a novel gene and a CpG island, complete sequence Length = 156615 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 aattttaatcatatcctgggac 361 |||||||||||||||||||||| Sbjct: 45545 aattttaatcatatcctgggac 45566
>gb|AY819697.1| Vernicia fordii NADH:cytochrome b5 reductase (CBR1A) gene, complete cds Length = 3575 Score = 44.1 bits (22), Expect = 0.38 Identities = 55/66 (83%) Strand = Plus / Minus Query: 335 cagtgaattttaatcatatcctgggacacaaacccaacaccaccgttccagacttcagga 394 |||||| ||| |||||| |||| || ||||| ||||| ||||| | ||| ||||||||| Sbjct: 3310 cagtgattttcaatcatttcctttgatacaaagccaacgccaccatcccatacttcagga 3251 Query: 395 ggctga 400 |||||| Sbjct: 3250 ggctga 3245 Score = 40.1 bits (20), Expect = 6.0 Identities = 47/56 (83%) Strand = Plus / Minus Query: 260 aggtgcgcagccatcgccttgttcatcggaggagggccgcatctcaagatctggat 315 ||||| |||||||| ||||||||||| || || || || ||||||| |||||||| Sbjct: 3532 aggtgagcagccatggccttgttcataggtggtggtccacatctcagaatctggat 3477
>dbj|AB007800.1| Arabidopsis thaliana gene for NADH-cytochrome b5 reductase, complete cds Length = 2186 Score = 44.1 bits (22), Expect = 0.38 Identities = 76/94 (80%) Strand = Plus / Minus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 2033 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 1974 Query: 279 tgttcatcggaggagggccgcatctcaagatctg 312 ||||||| || || || |||||||| | |||||| Sbjct: 1973 tgttcattggcggtggtccgcatcttaggatctg 1940
>dbj|AB006706.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVA3 Length = 81701 Score = 44.1 bits (22), Expect = 0.38 Identities = 76/94 (80%) Strand = Plus / Plus Query: 219 agaactggaactgcatctcctttgtgtatccgagctcctcaaggtgcgcagccatcgcct 278 |||||||||| ||||||||| | |||||| || | ||||||| |||||||| |||| Sbjct: 46795 agaactggaattgcatctccggagagtatcccagagcttcaaggtttgcagccatggcct 46854 Query: 279 tgttcatcggaggagggccgcatctcaagatctg 312 ||||||| || || || |||||||| | |||||| Sbjct: 46855 tgttcattggcggtggtccgcatcttaggatctg 46888
>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence Length = 223529 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 ttccagacttcaggaggctga 400 ||||||||||||||||||||| Sbjct: 131534 ttccagacttcaggaggctga 131514
>ref|XM_948489.1| Theileria annulata strain Ankara hypothetical protein (TA09625) partial mRNA Length = 2484 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 atttcaaaccaataataaaag 56 ||||||||||||||||||||| Sbjct: 243 atttcaaaccaataataaaag 263
>gb|AC074389.8| Homo sapiens BAC clone RP11-510K8 from 7, complete sequence Length = 195782 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 tcggaggagggccgcatctca 305 ||||||||||||||||||||| Sbjct: 14284 tcggaggagggccgcatctca 14304
>gb|AC130220.3| Mus musculus BAC clone RP23-140M6 from chromosome 6, complete sequence Length = 200785 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ggaggtacaagactaaaaat 121 |||||||||||||||||||| Sbjct: 110796 ggaggtacaagactaaaaat 110777
>ref|XM_658404.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5892.2), mRNA Length = 2229 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 aactgcatctcctttgtgtatccg 250 |||||||||||||| ||||||||| Sbjct: 833 aactgcatctccttcgtgtatccg 810
>gb|AY439097.1| Glycine max cyclin d2 mRNA, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 ctgattcaacacgtagaaaa 416 |||||||||||||||||||| Sbjct: 1075 ctgattcaacacgtagaaaa 1094
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttcaaaccaataataaaagt 57 |||||||||||||||||||| Sbjct: 176675 ttcaaaccaataataaaagt 176694
>gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete sequence Length = 90381 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atttcaatttcaaaccaata 49 |||||||||||||||||||| Sbjct: 20539 atttcaatttcaaaccaata 20558
>emb|AL139084.9| Human DNA sequence from clone RP11-318G11 on chromosome 13 Contains part of the gene for zizimin1 (KIAA1085) and a ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 80803 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tttcaatttcaaaccaataa 50 |||||||||||||||||||| Sbjct: 49672 tttcaatttcaaaccaataa 49691
>emb|AL080286.16|HSDJ655C4 Human DNA sequence from clone RP4-655C4 on chromosome 1p32.3-34.3 Contains a ferritin light polypeptide (FTL) pseudogene, complete sequence Length = 155278 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 atctggatgtcctcagcagg 327 |||||||||||||||||||| Sbjct: 57575 atctggatgtcctcagcagg 57556
>emb|BX056583.1|CNS09FTN Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC36AA03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 976 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 aatgcatcgcttgtggaagatata 142 |||||||| ||||||||||||||| Sbjct: 709 aatgcatctcttgtggaagatata 732
>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence Length = 186563 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttcaaaccaataataaaagt 57 |||||||||||||||||||| Sbjct: 7860 ttcaaaccaataataaaagt 7879
>gb|AC083800.13| Homo sapiens 3q BAC RP11-484M3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181395 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tgcatctcctttgtgtatcc 249 |||||||||||||||||||| Sbjct: 1585 tgcatctcctttgtgtatcc 1566
>gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, complete sequence Length = 126394 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ctcatatttcaatttcaaac 44 |||||||||||||||||||| Sbjct: 93086 ctcatatttcaatttcaaac 93067
>gb|AC012032.22| Homo sapiens 3 BAC RP11-630D12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 122889 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tgcatctcctttgtgtatcc 249 |||||||||||||||||||| Sbjct: 122475 tgcatctcctttgtgtatcc 122456
>gb|AC157516.2| Mus musculus BAC clone RP24-279F18 from chromosome 9, complete sequence Length = 175493 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 atcatatcctgggacacaaa 366 |||||||||||||||||||| Sbjct: 52536 atcatatcctgggacacaaa 52517
>emb|BX832891.1|CNS0A0GU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL1ZG02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 922 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 368 ccaacaccaccgttccagacttcaggaggctg 399 ||||||||||| ||||| ||||| |||||||| Sbjct: 649 ccaacaccaccattccatacttccggaggctg 618
>gb|AF212926.1|AF212926 Pseudaletia unipuncta allatotropin neuropeptide precursor, mRNA, complete cds Length = 1525 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gaggtacaagactaaaaatg 122 |||||||||||||||||||| Sbjct: 1067 gaggtacaagactaaaaatg 1086
>emb|CR931761.6| Zebrafish DNA sequence from clone DKEY-27P1 in linkage group 10, complete sequence Length = 151872 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 aatttcaaaccaataataaa 54 |||||||||||||||||||| Sbjct: 27997 aatttcaaaccaataataaa 28016
>gb|AC164552.4| Mus musculus BAC clone RP23-352M7 from chromosome 9, complete sequence Length = 169465 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 atcatatcctgggacacaaa 366 |||||||||||||||||||| Sbjct: 160482 atcatatcctgggacacaaa 160463 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,255,932 Number of Sequences: 3902068 Number of extensions: 4255932 Number of successful extensions: 74694 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74559 Number of HSP's gapped (non-prelim): 123 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
