Clone Name | rbart42g06 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197496.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.4), mRNA Length = 928 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 618 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 566
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 7676 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 7624 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtc 425 ||||||||||| || ||||| || |||||| |||||||| |||||||||| Sbjct: 4601 ctccacgaaccgcttcgcccacgccgccaggagcggggtcttgccggcgtc 4551
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 65977 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 65925 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtc 425 ||||||||||| || ||||| || |||||| |||||||| |||||||||| Sbjct: 62902 ctccacgaaccgcttcgcccacgccgccaggagcggggtcttgccggcgtc 62852
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 20100514 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 20100566 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Plus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtc 425 ||||||||||| || ||||| || |||||| |||||||| |||||||||| Sbjct: 20103589 ctccacgaaccgcttcgcccacgccgccaggagcggggtcttgccggcgtc 20103639
>dbj|AK105926.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A09, full insert sequence Length = 1030 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 718 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 666
>dbj|AK104213.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F07, full insert sequence Length = 928 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 716 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 664
>dbj|AK098972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077C21, full insert sequence Length = 1005 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 718 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 666
>dbj|AK067361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013101K13, full insert sequence Length = 1024 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 717 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 665
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtcga 427 ||||||||||| ||| ||||| || |||||| |||||||| |||||||||||| Sbjct: 20111790 ctccacgaaccgctccgcccacgccgccaggagcggggtcttgccggcgtcga 20111842 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Plus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtc 425 ||||||||||| || ||||| || |||||| |||||||| |||||||||| Sbjct: 20114865 ctccacgaaccgcttcgcccacgccgccaggagcggggtcttgccggcgtc 20114915
>gb|AC167173.4| Mus musculus BAC clone RP23-30D21 from chromosome 3, complete sequence Length = 203513 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 45 aagagtataaccacatagtttac 67 ||||||||||||||||||||||| Sbjct: 144650 aagagtataaccacatagtttac 144672
>ref|NM_197497.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0034L04.1), mRNA Length = 914 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtc 425 ||||||||||| || ||||| || |||||| |||||||| |||||||||| Sbjct: 603 ctccacgaaccgcttcgcccacgccgccaggagcggggtcttgccggcgtc 553
>gb|AF402800.1| Oryza sativa (japonica cultivar-group) clone RICS12005A putative glutathione S-transferase OsGSTU13 mRNA, complete cds Length = 998 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Minus Query: 375 ctccacgaacctctcagcccaggcggccaggcgcggggtcctgccggcgtc 425 ||||||||||| || ||||| || |||||| |||||||| |||||||||| Sbjct: 668 ctccacgaaccgcttcgcccacgccgccaggagcggggtcttgccggcgtc 618
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 309 ccgcagcttctcggcctcctcc 330 |||||||||||||||||||||| Sbjct: 11774521 ccgcagcttctcggcctcctcc 11774542
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 309 ccgcagcttctcggcctcctcc 330 |||||||||||||||||||||| Sbjct: 11771284 ccgcagcttctcggcctcctcc 11771305
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence Length = 162711 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 ccgcagcttctcggcctcctcc 330 |||||||||||||||||||||| Sbjct: 136132 ccgcagcttctcggcctcctcc 136111
>ref|XM_001004672.1| PREDICTED: Mus musculus similar to 40S ribosomal protein S15 (RIG protein) (LOC628847), mRNA Length = 438 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 338 tttccatgggtggcgccgccttctt 362 ||||||||||||||||| ||||||| Sbjct: 214 tttccatgggtggcgcctccttctt 190
>ref|XM_917901.1| PREDICTED: Mus musculus similar to 40S ribosomal protein S15 (RIG protein) (LOC638324), mRNA Length = 438 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 338 tttccatgggtggcgccgccttctt 362 ||||||||||||||||| ||||||| Sbjct: 214 tttccatgggtggcgcctccttctt 190
>ref|XM_895111.1| PREDICTED: Mus musculus similar to 40S ribosomal protein S15 (RIG protein) (LOC628847), mRNA Length = 438 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 338 tttccatgggtggcgccgccttctt 362 ||||||||||||||||| ||||||| Sbjct: 214 tttccatgggtggcgcctccttctt 190
>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence Length = 191116 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 338 tttccatgggtggcgccgccttctt 362 ||||||||||||||||| ||||||| Sbjct: 117069 tttccatgggtggcgcctccttctt 117093
>gb|AY373324.1| Gallus gallus sine oculis related homeobox 3 mRNA, complete cds Length = 1009 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cccgcagcttctcggcctcct 328 ||||||||||||||||||||| Sbjct: 522 cccgcagcttctcggcctcct 502
>emb|Y15106.1|GGCSIX3 Gallus gallus mRNA for cSIX3 protein Length = 1204 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cccgcagcttctcggcctcct 328 ||||||||||||||||||||| Sbjct: 697 cccgcagcttctcggcctcct 677
>ref|NM_204364.1| Gallus gallus sine oculis homeobox homolog 3 (Drosophila) (SIX3), mRNA Length = 1204 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cccgcagcttctcggcctcct 328 ||||||||||||||||||||| Sbjct: 697 cccgcagcttctcggcctcct 677
>emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chromosome X, complete sequence Length = 194106 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 taatactcataaagtaataat 173 ||||||||||||||||||||| Sbjct: 178747 taatactcataaagtaataat 178727
>dbj|AB042621.1| Cricetulus griseus mRNA for Pex7, complete cds Length = 1453 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 gcccgcagcttctcggcctcc 327 ||||||||||||||||||||| Sbjct: 65 gcccgcagcttctcggcctcc 45
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 agccgccgcagcccacatag 307 |||||||||||||||||||| Sbjct: 1678112 agccgccgcagcccacatag 1678093
>ref|XM_811761.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053509905.180) partial mRNA Length = 1410 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ccgcagcttctcggcctcct 328 |||||||||||||||||||| Sbjct: 719 ccgcagcttctcggcctcct 738
>emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 in linkage group 2, complete sequence Length = 176623 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 19 tgtagcataattcatgtcaaaaaataaa 46 |||||||||||| |||| |||||||||| Sbjct: 128086 tgtagcataattgatgtaaaaaaataaa 128059
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gcagcttctcggcctcctcc 330 |||||||||||||||||||| Sbjct: 65039 gcagcttctcggcctcctcc 65020
>ref|XM_541332.2| PREDICTED: Canis familiaris similar to Isoleucyl-tRNA synthetase, cytoplasmic (Isoleucine--tRNA ligase) (IleRS) (IRS) (LOC484216), mRNA Length = 8292 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 gcagcttctcggcctcctcc 330 |||||||||||||||||||| Sbjct: 2869 gcagcttctcggcctcctcc 2850
>emb|BX028116.1|CNS08TUW Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA42AC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 891 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 cagcttctcggcctcctccaacat 335 |||||||||| ||||||||||||| Sbjct: 847 cagcttctcgtcctcctccaacat 870
>ref|NM_057646.2| Drosophila melanogaster Ryanodine receptor 44F CG10844-RD, transcript variant D (Rya-r44F), mRNA Length = 15778 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gccgccttctttgcagcctc 371 |||||||||||||||||||| Sbjct: 13884 gccgccttctttgcagcctc 13865
>ref|NM_057645.2| Drosophila melanogaster Ryanodine receptor 44F CG10844-RC, transcript variant C (Rya-r44F), mRNA Length = 15820 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gccgccttctttgcagcctc 371 |||||||||||||||||||| Sbjct: 13926 gccgccttctttgcagcctc 13907
>ref|NM_057644.2| Drosophila melanogaster Ryanodine receptor 44F CG10844-RB, transcript variant B (Rya-r44F), mRNA Length = 15778 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gccgccttctttgcagcctc 371 |||||||||||||||||||| Sbjct: 13884 gccgccttctttgcagcctc 13865
>ref|NM_057643.2| Drosophila melanogaster Ryanodine receptor 44F CG10844-RA, transcript variant A (Rya-r44F), mRNA Length = 15820 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gccgccttctttgcagcctc 371 |||||||||||||||||||| Sbjct: 13926 gccgccttctttgcagcctc 13907
>gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, complete sequence Length = 173836 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 acttagaggagtgaaattca 132 |||||||||||||||||||| Sbjct: 66042 acttagaggagtgaaattca 66023
>gb|AC007471.4|AC007471 Drosophila melanogaster, chromosome 2R, region 44F-45A, BAC clone BACR02C23, complete sequence Length = 168601 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gccgccttctttgcagcctc 371 |||||||||||||||||||| Sbjct: 79266 gccgccttctttgcagcctc 79247
>ref|XM_317450.2| Anopheles gambiae str. PEST ENSANGP00000012400 (ENSANGG00000009911), partial mRNA Length = 783 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 cagcttctcggcctcctccaacat 335 |||||||||| ||||||||||||| Sbjct: 681 cagcttctcgtcctcctccaacat 704
>emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in linkage group 20, complete sequence Length = 128871 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcataattcatgtcaaaaaa 42 |||||||||||||||||||| Sbjct: 75429 gcataattcatgtcaaaaaa 75448
>gb|AE003835.4| Drosophila melanogaster chromosome 2R, section 15 of 73 of the complete sequence Length = 271696 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gccgccttctttgcagcctc 371 |||||||||||||||||||| Sbjct: 92386 gccgccttctttgcagcctc 92367
>dbj|D17389.1|DRORYRH Drosophila melanogaster DNA for ryanodine receptor homologue, complete cds Length = 25680 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gccgccttctttgcagcctc 371 |||||||||||||||||||| Sbjct: 23580 gccgccttctttgcagcctc 23561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,694,431 Number of Sequences: 3902068 Number of extensions: 4694431 Number of successful extensions: 121299 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121095 Number of HSP's gapped (non-prelim): 204 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)