ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93170.1|HV1433B H.vulgare mRNA for Hv14-3-3b 139 1e-30
2emb|AL359874.9| Human DNA sequence from clone RP11-3K22 on chrom... 40 0.75
3dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 0.75
4gb|AC012331.9| Homo sapiens chromosome 22 clone b41c4 map 22q11,... 40 0.75
5gb|AC002308.1| Homo sapiens Chromosome 22q11.2 BAC Clone 1000e4 ... 40 0.75
6ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@)... 40 0.75
7dbj|D87007.1| Homo sapiens immunoglobulin lambda gene locus DNA,... 40 0.75
8gb|AC131329.13| Mus musculus chromosome 13, clone RP23-474B11, c... 38 3.0
9gb|AC113114.9| Mus musculus chromosome 17, clone RP23-338H10, co... 38 3.0
10gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome... 38 3.0
11dbj|AK136339.1| Mus musculus 15 days embryo male testis cDNA, RI... 38 3.0
12gb|AC159615.2| Mus musculus BAC clone RP24-484P4 from chromosome... 38 3.0
13gb|AF532117.1| Mus musculus strain 129/SvJ BAC clone citb9k22 fr... 38 3.0
14gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 ... 38 3.0
15gb|AC013403.9| Homo sapiens BAC clone RP11-195B17 from 2, comple... 38 3.0
16gb|AC007350.1|AC007350 Homo sapiens clone RP11-225G18 from 7p14-... 38 3.0
17gb|AC154819.2| Mus musculus BAC clone RP24-535A1 from 17, comple... 38 3.0
18emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on ch... 38 3.0
19dbj|AK116988.1| Ciona intestinalis cDNA, clone:cits012p01, full ... 38 3.0

>emb|X93170.1|HV1433B H.vulgare mRNA for Hv14-3-3b
          Length = 1136

 Score =  139 bits (70), Expect = 1e-30
 Identities = 73/74 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    caaggggccacacagacaagaggagcagaaatttctagaaccaccaaagtaacaggaagg 60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1084 caaggggccacacagacaagagcagcagaaatttctagaaccaccaaagtaacaggaagg 1025

                          
Query: 61   ttcaacaagaggca 74
            ||||||||||||||
Sbjct: 1024 ttcaacaagaggca 1011



to top

>emb|AL359874.9| Human DNA sequence from clone RP11-3K22 on chromosome 1, complete
             sequence
          Length = 79946

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    accaaagtaacaggaaggtt 62
             ||||||||||||||||||||
Sbjct: 46265 accaaagtaacaggaaggtt 46246



to top

>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 10      acacagacaagaggagcaga 29
               ||||||||||||||||||||
Sbjct: 1566966 acacagacaagaggagcaga 1566985



to top

>gb|AC012331.9| Homo sapiens chromosome 22 clone b41c4 map 22q11, complete sequence
          Length = 143376

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    aaggggccacacagacaagaggag 25
            ||||||||||||||| ||||||||
Sbjct: 7361 aaggggccacacagagaagaggag 7338



to top

>gb|AC002308.1| Homo sapiens Chromosome 22q11.2 BAC Clone 1000e4 In IGLC Region, complete
              sequence
          Length = 151111

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      aaggggccacacagacaagaggag 25
              ||||||||||||||| ||||||||
Sbjct: 110233 aaggggccacacagagaagaggag 110256



to top

>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22
          Length = 909203

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      aaggggccacacagacaagaggag 25
              ||||||||||||||| ||||||||
Sbjct: 677227 aaggggccacacagagaagaggag 677250



to top

>dbj|D87007.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:48A11
          Length = 37302

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aaggggccacacagacaagaggag 25
             ||||||||||||||| ||||||||
Sbjct: 11173 aaggggccacacagagaagaggag 11196



to top

>gb|AC131329.13| Mus musculus chromosome 13, clone RP23-474B11, complete sequence
          Length = 172830

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    gaaccaccaaagtaacagg 56
             |||||||||||||||||||
Sbjct: 63085 gaaccaccaaagtaacagg 63067



to top

>gb|AC113114.9| Mus musculus chromosome 17, clone RP23-338H10, complete sequence
          Length = 183828

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    aaagtaacaggaaggttca 64
             |||||||||||||||||||
Sbjct: 66806 aaagtaacaggaaggttca 66824



to top

>gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome 12, complete sequence
          Length = 208026

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    aggagcagaaatttctaga 39
             |||||||||||||||||||
Sbjct: 68144 aggagcagaaatttctaga 68126



to top

>dbj|AK136339.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:8030492L23
            product:unclassifiable, full insert sequence
          Length = 2530

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 46   aaagtaacaggaaggttca 64
            |||||||||||||||||||
Sbjct: 1311 aaagtaacaggaaggttca 1329



to top

>gb|AC159615.2| Mus musculus BAC clone RP24-484P4 from chromosome 12, complete sequence
          Length = 127735

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     aggagcagaaatttctaga 39
              |||||||||||||||||||
Sbjct: 123752 aggagcagaaatttctaga 123770



to top

>gb|AF532117.1| Mus musculus strain 129/SvJ BAC clone citb9k22 from the MHC region,
              complete sequence
          Length = 173288

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     accaccaaagtaacaggaa 58
              |||||||||||||||||||
Sbjct: 165947 accaccaaagtaacaggaa 165965



to top

>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region,
             complete sequence
          Length = 161729

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    accaccaaagtaacaggaa 58
             |||||||||||||||||||
Sbjct: 34652 accaccaaagtaacaggaa 34670



to top

>gb|AC013403.9| Homo sapiens BAC clone RP11-195B17 from 2, complete sequence
          Length = 159707

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      gccacacagacaagaggag 25
              |||||||||||||||||||
Sbjct: 114031 gccacacagacaagaggag 114049



to top

>gb|AC007350.1|AC007350 Homo sapiens clone RP11-225G18 from 7p14-15, complete sequence
          Length = 153339

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    agaaatttctagaaccacc 45
             |||||||||||||||||||
Sbjct: 79749 agaaatttctagaaccacc 79767



to top

>gb|AC154819.2| Mus musculus BAC clone RP24-535A1 from 17, complete sequence
          Length = 165136

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     accaccaaagtaacaggaa 58
              |||||||||||||||||||
Sbjct: 140871 accaccaaagtaacaggaa 140889



to top

>emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on chromosome 13, complete
             sequence
          Length = 155441

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    gaaccaccaaagtaacagg 56
             |||||||||||||||||||
Sbjct: 23025 gaaccaccaaagtaacagg 23043



to top

>dbj|AK116988.1| Ciona intestinalis cDNA, clone:cits012p01, full insert sequence
          Length = 1351

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cagaaatttctagaaccac 44
            |||||||||||||||||||
Sbjct: 1077 cagaaatttctagaaccac 1059


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 749,252
Number of Sequences: 3902068
Number of extensions: 749252
Number of successful extensions: 55084
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55049
Number of HSP's gapped (non-prelim): 35
length of query: 74
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 53
effective length of database: 17,151,101,840
effective search space: 909008397520
effective search space used: 909008397520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top