Clone Name | rbart42g05 |
---|---|
Clone Library Name | barley_pub |
>emb|X93170.1|HV1433B H.vulgare mRNA for Hv14-3-3b Length = 1136 Score = 139 bits (70), Expect = 1e-30 Identities = 73/74 (98%) Strand = Plus / Minus Query: 1 caaggggccacacagacaagaggagcagaaatttctagaaccaccaaagtaacaggaagg 60 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1084 caaggggccacacagacaagagcagcagaaatttctagaaccaccaaagtaacaggaagg 1025 Query: 61 ttcaacaagaggca 74 |||||||||||||| Sbjct: 1024 ttcaacaagaggca 1011
>emb|AL359874.9| Human DNA sequence from clone RP11-3K22 on chromosome 1, complete sequence Length = 79946 Score = 40.1 bits (20), Expect = 0.75 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 accaaagtaacaggaaggtt 62 |||||||||||||||||||| Sbjct: 46265 accaaagtaacaggaaggtt 46246
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 40.1 bits (20), Expect = 0.75 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 acacagacaagaggagcaga 29 |||||||||||||||||||| Sbjct: 1566966 acacagacaagaggagcaga 1566985
>gb|AC012331.9| Homo sapiens chromosome 22 clone b41c4 map 22q11, complete sequence Length = 143376 Score = 40.1 bits (20), Expect = 0.75 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 aaggggccacacagacaagaggag 25 ||||||||||||||| |||||||| Sbjct: 7361 aaggggccacacagagaagaggag 7338
>gb|AC002308.1| Homo sapiens Chromosome 22q11.2 BAC Clone 1000e4 In IGLC Region, complete sequence Length = 151111 Score = 40.1 bits (20), Expect = 0.75 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 aaggggccacacagacaagaggag 25 ||||||||||||||| |||||||| Sbjct: 110233 aaggggccacacagagaagaggag 110256
>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22 Length = 909203 Score = 40.1 bits (20), Expect = 0.75 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 aaggggccacacagacaagaggag 25 ||||||||||||||| |||||||| Sbjct: 677227 aaggggccacacagagaagaggag 677250
>dbj|D87007.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:48A11 Length = 37302 Score = 40.1 bits (20), Expect = 0.75 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 aaggggccacacagacaagaggag 25 ||||||||||||||| |||||||| Sbjct: 11173 aaggggccacacagagaagaggag 11196
>gb|AC131329.13| Mus musculus chromosome 13, clone RP23-474B11, complete sequence Length = 172830 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gaaccaccaaagtaacagg 56 ||||||||||||||||||| Sbjct: 63085 gaaccaccaaagtaacagg 63067
>gb|AC113114.9| Mus musculus chromosome 17, clone RP23-338H10, complete sequence Length = 183828 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 aaagtaacaggaaggttca 64 ||||||||||||||||||| Sbjct: 66806 aaagtaacaggaaggttca 66824
>gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome 12, complete sequence Length = 208026 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 aggagcagaaatttctaga 39 ||||||||||||||||||| Sbjct: 68144 aggagcagaaatttctaga 68126
>dbj|AK136339.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030492L23 product:unclassifiable, full insert sequence Length = 2530 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 aaagtaacaggaaggttca 64 ||||||||||||||||||| Sbjct: 1311 aaagtaacaggaaggttca 1329
>gb|AC159615.2| Mus musculus BAC clone RP24-484P4 from chromosome 12, complete sequence Length = 127735 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 aggagcagaaatttctaga 39 ||||||||||||||||||| Sbjct: 123752 aggagcagaaatttctaga 123770
>gb|AF532117.1| Mus musculus strain 129/SvJ BAC clone citb9k22 from the MHC region, complete sequence Length = 173288 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 accaccaaagtaacaggaa 58 ||||||||||||||||||| Sbjct: 165947 accaccaaagtaacaggaa 165965
>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region, complete sequence Length = 161729 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 accaccaaagtaacaggaa 58 ||||||||||||||||||| Sbjct: 34652 accaccaaagtaacaggaa 34670
>gb|AC013403.9| Homo sapiens BAC clone RP11-195B17 from 2, complete sequence Length = 159707 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 gccacacagacaagaggag 25 ||||||||||||||||||| Sbjct: 114031 gccacacagacaagaggag 114049
>gb|AC007350.1|AC007350 Homo sapiens clone RP11-225G18 from 7p14-15, complete sequence Length = 153339 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 agaaatttctagaaccacc 45 ||||||||||||||||||| Sbjct: 79749 agaaatttctagaaccacc 79767
>gb|AC154819.2| Mus musculus BAC clone RP24-535A1 from 17, complete sequence Length = 165136 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 accaccaaagtaacaggaa 58 ||||||||||||||||||| Sbjct: 140871 accaccaaagtaacaggaa 140889
>emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on chromosome 13, complete sequence Length = 155441 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 gaaccaccaaagtaacagg 56 ||||||||||||||||||| Sbjct: 23025 gaaccaccaaagtaacagg 23043
>dbj|AK116988.1| Ciona intestinalis cDNA, clone:cits012p01, full insert sequence Length = 1351 Score = 38.2 bits (19), Expect = 3.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cagaaatttctagaaccac 44 ||||||||||||||||||| Sbjct: 1077 cagaaatttctagaaccac 1059 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 749,252 Number of Sequences: 3902068 Number of extensions: 749252 Number of successful extensions: 55084 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55049 Number of HSP's gapped (non-prelim): 35 length of query: 74 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 53 effective length of database: 17,151,101,840 effective search space: 909008397520 effective search space used: 909008397520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)