ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42g03 |
|---|---|
| Clone Library Name | barley_pub |
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = -1 Query: 426 GKKWQVVLYIAVTGAPAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMALLQLFALCAM 247 G+ W ++ ++G P S + L R C GN A + F++ +L LF M Sbjct: 1755 GEAWHNIMLSCLSGKPCDKNSGI--LTREC-GNEFAYFYFVSFIFLCSFLMLNLFVAVIM 1811 Query: 246 TAFYYERREN 217 F Y R++ Sbjct: 1812 DNFEYLTRDS 1821
>MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Urokinase| receptor-associated protein) (Endocytic receptor 180) (CD280 antigen) Length = 1479 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -1 Query: 288 VLMALLQLFALCAMTAFYYERRENMD-GQLGATRYAKLSSEESNA 157 VLMA+L L AL Y RR++++ G RY++ SS + A Sbjct: 1418 VLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEA 1462
>MSC3_ASHGO (Q74ZL3) Meiotic sister-chromatid recombination protein 3| Length = 751 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 302 PKSNPSATLLPAHVLASVCTGERTAAGAPVTAMYSTTCHFFPFASLHALPNAAAP 466 P SNP + ++ +SV + A G VT S P +LHA AAAP Sbjct: 683 PLSNPPSVVVVPSATSSVPAAQGAAPGVAVTEGPSLGGPAAPVRALHATKTAAAP 737
>NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 291 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 172 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCLSVLLYRRRPHLGGELGGPRGCKLAT 901
>NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 291 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 172 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCISVLLYRRRPHLGGELGGPRGCKLAT 901
>ORML3_RAT (Q6QI25) ORM1-like protein 3 (Liver regeneration-related protein| LRRGT00183) Length = 153 Score = 28.9 bits (63), Expect = 7.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -1 Query: 72 FLNTVQAILFLYTQFYTKYDEV 7 FL +L+ T FYTKYD+V Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122
>ORML3_MOUSE (Q9CPZ6) ORM1-like protein 3| Length = 153 Score = 28.9 bits (63), Expect = 7.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -1 Query: 72 FLNTVQAILFLYTQFYTKYDEV 7 FL +L+ T FYTKYD+V Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122
>ORML3_PONPY (Q5R570) ORM1-like protein 3| Length = 153 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 72 FLNTVQAILFLYTQFYTKYDEV 7 FL +L+ T FYTKYD++ Sbjct: 101 FLTITPIVLYFLTSFYTKYDQI 122
>ORML3_HUMAN (Q8N138) ORM1-like protein 3| Length = 153 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 72 FLNTVQAILFLYTQFYTKYDEV 7 FL +L+ T FYTKYD++ Sbjct: 101 FLTITPIVLYFLTSFYTKYDQI 122
>ORML3_BRARE (Q5XJR6) ORM1-like protein 3| Length = 153 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -1 Query: 72 FLNTVQAILFLYTQFYTKYDEV 7 FL IL+ T FYTKYD V Sbjct: 101 FLTITPIILYFLTSFYTKYDRV 122
>Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989| Length = 198 Score = 28.5 bits (62), Expect = 9.2 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -1 Query: 369 LSPVHTLARTCAGNSVALGLLLGFVYAV-LMALLQLFALCAMTAF 238 L PV + G + ALG+LLGF + V LMALL + A+ F Sbjct: 94 LYPVFFQFKGGKGVATALGVLLGFAWPVGLMALLTWIGVAALFRF 138
>C19AA_BRARE (O42145) Cytochrome P450 19A1a (EC 1.14.14.1) (Aromatase) (CYPXIX)| (Estrogen synthetase) (P-450AROM) Length = 509 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -1 Query: 381 PAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMALLQLFALCAMTA 241 P+ P + R+C G +A+ ++ ++L+ALL F++C M A Sbjct: 442 PSRFFQPFGSGPRSCVGKHIAMVMMK----SILVALLSRFSVCPMKA 484
>CSTN1_DROME (Q9V498) Calsyntenin-1 precursor| Length = 978 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 182 SYH---RKNQTLDHSTCQLSHRLLLACNFHLLCRPGHIVIF 69 SYH R+N+TL T + CNFH+L +P H + F Sbjct: 45 SYHGLIRENETLVEITPLIKVNEEKICNFHILKKPYHEIPF 85
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/70 (25%), Positives = 30/70 (42%) Frame = -1 Query: 426 GKKWQVVLYIAVTGAPAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMALLQLFALCAM 247 G+ W ++ ++G P S + L C GN A + F++ +L LF M Sbjct: 1658 GEAWHNIMLSCLSGKPCDKNSGI--LTADC-GNEFAYFYFVSFIFLCSFLMLNLFVAVIM 1714 Query: 246 TAFYYERREN 217 F Y R++ Sbjct: 1715 DNFEYLTRDS 1724 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,665,384 Number of Sequences: 219361 Number of extensions: 1133843 Number of successful extensions: 3466 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3466 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
