ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin,... 638 e-180
2dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd 638 e-180
3gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrins... 309 4e-81
4ref|XM_466869.1| Oryza sativa (japonica cultivar-group), mRNA 119 7e-24
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
6dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
7dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
8gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence 111 2e-21
9gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein... 111 2e-21
10gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein... 103 4e-19
11gb|AY109332.1| Zea mays CL502_5 mRNA sequence 103 4e-19
12ref|XM_473219.1| Oryza sativa (japonica cultivar-group), predic... 88 3e-14
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
14emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 88 3e-14
15gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds 74 4e-10
16gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protei... 74 4e-10
17dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 58 2e-05
18gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chrom... 42 1.4
19emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chr... 42 1.4
20emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on ch... 42 1.4
21gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete... 42 1.4
22gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, comple... 42 1.4
23dbj|AK120386.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
24emb|AL392086.14| Human DNA sequence from clone RP11-799O21 on ch... 40 5.5
25emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chr... 40 5.5
26emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chr... 40 5.5
27emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.5
28emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 5.5
29gb|BC061498.1| Mus musculus SWI/SNF related, matrix associated, ... 40 5.5
30gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (R... 40 5.5
31gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, co... 40 5.5
32gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, comp... 40 5.5
33gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, compl... 40 5.5
34gb|AC008041.5| Homo sapiens 3 BAC RPCI11-469J4 (Roswell Park Can... 40 5.5
35gb|AF135398.1|AF135398 Thermus brockianus strain ITI360 putative... 40 5.5
36gb|AC136837.1| Homo sapiens chromosome 16 clone RP11-483N11, com... 40 5.5 
>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds
          Length = 1318

 Score =  638 bits (322), Expect = e-180
 Identities = 336/343 (97%)
 Strand = Plus / Minus

                                                                        
Query: 68   gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1202

                                                                        
Query: 128  ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1142

                                                                        
Query: 188  tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccat 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccat 1082

                                                                        
Query: 248  agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgnnnnnnnt 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 1081 agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgccccccct 1022

                                                                        
Query: 308  cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 962

                                                       
Query: 368  cgctggccctcagcacatactggtggtaggcggcggcaatggc 410
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  cgctggccctcagcacatactggtggtaggcggcggcaatggc 919
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>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd
          Length = 1251

 Score =  638 bits (322), Expect = e-180
 Identities = 336/343 (97%)
 Strand = Plus / Minus

                                                                        
Query: 68   gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1122

                                                                        
Query: 128  ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1062

                                                                        
Query: 188  tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccat 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccat 1002

                                                                        
Query: 248  agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgnnnnnnnt 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 1001 agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgccccccct 942

                                                                        
Query: 308  cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 882

                                                       
Query: 368  cgctggccctcagcacatactggtggtaggcggcggcaatggc 410
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881  cgctggccctcagcacatactggtggtaggcggcggcaatggc 839



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 1    aaacggtaccaattctttgatgaccaaagtctcc 34
            ||||||||||||||||||||| |||||| |||||
Sbjct: 1244 aaacggtaccaattctttgattaccaaattctcc 1211
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>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA,
            complete cds
          Length = 1235

 Score =  309 bits (156), Expect = 4e-81
 Identities = 205/220 (93%), Gaps = 6/220 (2%)
 Strand = Plus / Minus

                                                                        
Query: 84   agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaaacacgtcgacat 143
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1145 agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaa-cacgtcgacgt 1087

                                                                        
Query: 144  acgaatggacggtcacatcaacatatgcacaagccgaggaacggtagcagcagatgatgc 203
            ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1086 acgaatggacggtcacatcgacatatgcacaagccgaggaacggtagcagctgatgatgc 1027

                                                                        
Query: 204  gaagactggagccactga-----accaagcggtgggatcgagcagccatagcgcattggc 258
             |||||||||||||||||     || |||  ||||||||||||| |||||||||||| ||
Sbjct: 1026 aaagactggagccactgaacaggacaaaggtgtgggatcgagcaaccatagcgcatttgc 967

                                                    
Query: 259  tggaggcggccttcttcttcgcacatatctacacttcagt 298
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  tggaggcggccttcttcttcgcacatatctacacttcagt 927



 Score =  155 bits (78), Expect = 1e-34
 Identities = 93/98 (94%)
 Strand = Plus / Minus

                                                                       
Query: 313 gtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcggcgctg 372
           ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gtccggccggagcgacggccggcttagttgctcctgtaggacccgagcttggcggcgctg 869

                                                 
Query: 373 gccctcagcacatactggtggtaggcggcggcaatggc 410
           ||||||||||| |||||||||||||||||||| |||||
Sbjct: 868 gccctcagcacgtactggtggtaggcggcggcgatggc 831
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>ref|XM_466869.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1214

 Score =  119 bits (60), Expect = 7e-24
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                       
Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 928 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 869

                       
Query: 399 ggcggcaatggc 410
           |||||| |||||
Sbjct: 868 ggcggcgatggc 857
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 7e-24
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                            
Query: 339      gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
                |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 25184709 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 25184650

                            
Query: 399      ggcggcaatggc 410
                |||||| |||||
Sbjct: 25184649 ggcggcgatggc 25184638
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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1469H02
          Length = 136602

 Score =  119 bits (60), Expect = 7e-24
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                         
Query: 339   gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
             |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 85102 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 85043

                         
Query: 399   ggcggcaatggc 410
             |||||| |||||
Sbjct: 85042 ggcggcgatggc 85031
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>dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E03, full
           insert sequence
          Length = 1214

 Score =  119 bits (60), Expect = 7e-24
 Identities = 69/72 (95%)
 Strand = Plus / Minus

                                                                       
Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 928 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 869

                       
Query: 399 ggcggcaatggc 410
           |||||| |||||
Sbjct: 868 ggcggcgatggc 857
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>gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence
          Length = 1215

 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Minus

                                                                       
Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
           |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 956 gttgctccggtaggacccgagcttggtggcgctggccctcagcacgtactggtggtaggc 897

                       
Query: 399 ggcggcaatggc 410
           |||||| |||||
Sbjct: 896 ggcggcgatggc 885
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>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete
           cds
          Length = 1171

 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Minus

                                                                       
Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
           |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 948 gttgctccggtaggacccgagcttggtggcgctggccctcagcacgtactggtggtaggc 889

                       
Query: 399 ggcggcaatggc 410
           |||||| |||||
Sbjct: 888 ggcggcgatggc 877
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>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete
           cds
          Length = 1156

 Score =  103 bits (52), Expect = 4e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                       
Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
           |||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct: 938 gttgctccggtaggacccgagcttggtggcgctggctctcagcacgtactggtggtaggc 879

                       
Query: 399 ggcggcaatggc 410
           |||||| |||||
Sbjct: 878 ggcggcgatggc 867
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>gb|AY109332.1| Zea mays CL502_5 mRNA sequence
          Length = 1969

 Score =  103 bits (52), Expect = 4e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                       
Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398
           |||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct: 366 gttgctccggtaggacccgagcttggtggcgctggctctcagcacgtactggtggtaggc 307

                       
Query: 399 ggcggcaatggc 410
           |||||| |||||
Sbjct: 306 ggcggcgatggc 295
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>ref|XM_473219.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 355 ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggc 410
           |||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 848 ccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggc 793
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                        
Query: 355      ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggc 410
                |||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 26074840 ccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggc 26074785
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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
              complete sequence
          Length = 163039

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                      
Query: 355    ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggc 410
              |||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 109167 ccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggc 109112
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>gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds
          Length = 1104

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 358 agcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggc 410
           |||||||||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 833 agcttggcggcgctggccctcagcacgtactggtggtacgccgcggcgatggc 781
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>gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protein (pip2-5) mRNA, complete
           cds
          Length = 1207

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 358 agcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggc 410
           |||||||||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 888 agcttggcggcgctggccctcagcacgtactggtggtacgccgcggcgatggc 836
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>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete
           cds
          Length = 1343

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 355 ccgagcttggcggcgctggccctcagcacatactggtggta 395
           |||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 918 ccgaacttggtggcgctggccctcagcacgtactggtggta 878
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>gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chromosome 6, complete
              sequence
          Length = 148530

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 77     aaagaaaagcacacttggaagaaac 101
              |||||||| ||||||||||||||||
Sbjct: 110966 aaagaaaaacacacttggaagaaac 110990
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>emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 79387

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 77    aaagaaaagcacacttggaagaaac 101
             ||||||||| |||||||||||||||
Sbjct: 40318 aaagaaaagtacacttggaagaaac 40342
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>emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on chromosome 6, complete
             sequence
          Length = 95430

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 77    aaagaaaagcacacttggaagaaac 101
             |||||||| ||||||||||||||||
Sbjct: 35576 aaagaaaaacacacttggaagaaac 35552
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>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   ggtcacatcaacatatgcaca 174
             |||||||||||||||||||||
Sbjct: 33938 ggtcacatcaacatatgcaca 33958
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>gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, complete sequence
          Length = 34461

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    aagaaaagcacacttggaaga 98
             |||||||||||||||||||||
Sbjct: 18083 aagaaaagcacacttggaaga 18063
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>dbj|AK120386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073J03, full
           insert sequence
          Length = 616

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 339 gttgctcctgtaggacccgagcttg 363
           |||||||| ||||||||||||||||
Sbjct: 288 gttgctccggtaggacccgagcttg 264
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>emb|AL392086.14| Human DNA sequence from clone RP11-799O21 on chromosome 10 Contains the
              3' end of a novel gene and a novel gene, complete sequence
          Length = 220225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    ttgctcctgtaggacccgag 359
              ||||||||||||||||||||
Sbjct: 100729 ttgctcctgtaggacccgag 100748
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>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete
             sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   tcacatcaacatatgcacaa 175
             ||||||||||||||||||||
Sbjct: 78375 tcacatcaacatatgcacaa 78394
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>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the 3'
              end of the gene for progesterone-induced blocking factor 1
              (PIBF1), a proteasome (prosome, macropain) 26S subunit,
              non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene for
              Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2), a
              fatty acid binding protein 5 (psoriasis-associated)
              (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a
              CpG island, complete sequence
          Length = 199882

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    ctggagccactgaaccaagc 228
              ||||||||||||||||||||
Sbjct: 183049 ctggagccactgaaccaagc 183030
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   tactggtggtaggcggcggc 404
             ||||||||||||||||||||
Sbjct: 74741 tactggtggtaggcggcggc 74722
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    tactggtggtaggcggcggc 404
              ||||||||||||||||||||
Sbjct: 187779 tactggtggtaggcggcggc 187760
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>gb|BC061498.1| Mus musculus SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily e, member 1, mRNA
           (cDNA clone MGC:70264 IMAGE:5251562), complete cds
          Length = 2386

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 310 cgcgtccggccggagctacgggcg 333
           ||||||||||||||||| ||||||
Sbjct: 5   cgcgtccggccggagctgcgggcg 28
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>gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 151011

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aagaaaagcacacttggaag 97
             ||||||||||||||||||||
Sbjct: 79101 aagaaaagcacacttggaag 79120
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>gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, complete sequence
          Length = 207997

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 345    cctgtaggacccgagcttggcggc 368
              |||| |||||||||||||||||||
Sbjct: 193419 cctgcaggacccgagcttggcggc 193396
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>gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, complete sequence
          Length = 159064

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   cctgtaggacccgagcttggcggc 368
             |||| |||||||||||||||||||
Sbjct: 53537 cctgcaggacccgagcttggcggc 53560
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>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence
          Length = 158692

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    aaagaaaagcacacttggaagaaa 100
             ||||||||| ||||||||||||||
Sbjct: 56776 aaagaaaagtacacttggaagaaa 56799
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>gb|AC008041.5| Homo sapiens 3 BAC RPCI11-469J4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 178896

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  aggacccgagcttggcggcg 369
            ||||||||||||||||||||
Sbjct: 3614 aggacccgagcttggcggcg 3633
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>gb|AF135398.1|AF135398 Thermus brockianus strain ITI360 putative galactoside binding protein
            (bdtE) gene, partial cds; and putative integral membrane
            protein (bdtF), putative integral membrane protein
            (bdtG), beta-galactosidase (bgaT), alpha-galactosidase
            (agaT), galactose-1-phosphate uridylyltransferase homolog
            (galT), glycerol kinase homolog (glpK), and glycerol
            dehydrogenase homolog (glpD) genes, complete cds
          Length = 10091

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  cttggcggcgctggccctca 379
            ||||||||||||||||||||
Sbjct: 2375 cttggcggcgctggccctca 2394
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>gb|AC136837.1| Homo sapiens chromosome 16 clone RP11-483N11, complete sequence
          Length = 65756

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 345   cctgtaggacccgagcttggcggc 368
             |||| |||||||||||||||||||
Sbjct: 34175 cctgcaggacccgagcttggcggc 34152


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,805,973
Number of Sequences: 3902068
Number of extensions: 2805973
Number of successful extensions: 57335
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57212
Number of HSP's gapped (non-prelim): 120
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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