>gb|AY277959.1| Takifugu rubripes transcription factor Sox11 (Sox11) gene, complete
            cds
          Length = 4190

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   aaattcaaactaaaatcgaac 68
            |||||||||||||||||||||
Sbjct: 2625 aaattcaaactaaaatcgaac 2605

>emb|AL022153.1|HS23K20 Human DNA sequence from clone RP1-23K20 on chromosome Xq25-26.2
             Contains the 5' end of the COVA1 gene for cytosolic
             ovarian carcinoma antigen 1, the 3' end of a novel gene
             and a CpG island, complete sequence
          Length = 126352

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 260   agatgagggctttcttgcagg 280
             |||||||||||||||||||||
Sbjct: 70370 agatgagggctttcttgcagg 70390

>emb|BX927154.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 7/10
          Length = 349575

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 216   ccagcttgacgaggatctacc 236
             |||||||||||||||||||||
Sbjct: 80314 ccagcttgacgaggatctacc 80334

>emb|BX119930.5| Zebrafish DNA sequence from clone DKEY-18G4 in linkage group 3,
             complete sequence
          Length = 186318

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    acagatattcatgtacacagg 91
             |||||||||||||||||||||
Sbjct: 82381 acagatattcatgtacacagg 82401

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 216     ccagcttgacgaggatctacc 236
               |||||||||||||||||||||
Sbjct: 2205258 ccagcttgacgaggatctacc 2205278

>emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on chromosome 2, complete
              sequence
          Length = 230161

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     tttttaaagtataacatttac 36
              |||||||||||||||||||||
Sbjct: 140436 tttttaaagtataacatttac 140456

>gb|L27126.1|CORPYKI Corynebacterium pyruvate kinase gene, complete cds
          Length = 2795

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 216  ccagcttgacgaggatctacc 236
            |||||||||||||||||||||
Sbjct: 2577 ccagcttgacgaggatctacc 2557

>gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, complete sequence
          Length = 167656

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    ctttttaaagtataacattt 34
             ||||||||||||||||||||
Sbjct: 10816 ctttttaaagtataacattt 10835

>gb|BC071431.1| Danio rerio enhancer of rudimentary homolog (Drosophila), mRNA
           (cDNA clone MGC:86761 IMAGE:6899531), complete cds
          Length = 902

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  taaagtataacatttacaca 39
           ||||||||||||||||||||
Sbjct: 719 taaagtataacatttacaca 738

>gb|BC059528.1| Danio rerio enhancer of rudimentary homolog (Drosophila), mRNA
           (cDNA clone MGC:73178 IMAGE:4786063), complete cds
          Length = 861

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  taaagtataacatttacaca 39
           ||||||||||||||||||||
Sbjct: 684 taaagtataacatttacaca 703

>gb|AC115928.10| Mus musculus chromosome 18, clone RP24-530D22, complete sequence
          Length = 182777

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    catgtacacaggatctgcaa 99
             ||||||||||||||||||||
Sbjct: 31426 catgtacacaggatctgcaa 31445

>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence
          Length = 139630

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     catgtacacaggatctgcaa 99
              ||||||||||||||||||||
Sbjct: 133196 catgtacacaggatctgcaa 133215

>ref|XM_823112.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.v4.0001)
            partial mRNA
          Length = 4950

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  ctggcgaagatgagggctttcttg 276
            ||||||||||||||| ||||||||
Sbjct: 1249 ctggcgaagatgaggactttcttg 1272

>emb|Z81101.1|CEK09G1 Caenorhabditis elegans Cosmid K09G1, complete sequence
          Length = 34657

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  caaattcaaactaaaatcga 66
           ||||||||||||||||||||
Sbjct: 212 caaattcaaactaaaatcga 193

>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence
          Length = 191116

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     ctttttaaagtataacattt 34
              ||||||||||||||||||||
Sbjct: 161897 ctttttaaagtataacattt 161916

>gb|AC124501.3| Mus musculus BAC clone RP23-412F10 from chromosome 6, complete sequence
          Length = 210057

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     atctgcaaattcaggctaaa 111
              ||||||||||||||||||||
Sbjct: 117750 atctgcaaattcaggctaaa 117769

>emb|AL391495.16| Human DNA sequence from clone RP11-324B6 on chromosome Xq13.2-21.1
             Contains a tetratricopeptide repeat domain 3 (TTC3)
             pseudogene and the gene for hepatocellular
             carcinoma-associated protein (HCA3), complete sequence
          Length = 142952

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tttaaagtataacatttaca 37
             ||||||||||||||||||||
Sbjct: 16478 tttaaagtataacatttaca 16497

>emb|AL353622.33| Human DNA sequence from clone RP5-1092A3 on chromosome 1 Contains the
             5' end of the DNAJC8 gene for DnaJ (Hsp40) homolog
             subfamily C member 8, the ATPIF1 gene for ATPase
             inhibitory factor 1, the SESN2 gene for sestrin 2, the
             gene for a novel protein (FLJ20045) and a CpG island,
             complete sequence
          Length = 157243

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    ctttttaaagtataacattt 34
             ||||||||||||||||||||
Sbjct: 10592 ctttttaaagtataacattt 10573

>gb|AC164168.3| Mus musculus 6 BAC RP23-343D21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 236103

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     atctgcaaattcaggctaaa 111
              ||||||||||||||||||||
Sbjct: 199969 atctgcaaattcaggctaaa 199988

>gb|AC104450.2| Homo sapiens chromosome 3 clone RP11-493K19, complete sequence
          Length = 217337

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    caaaagagctacaatccaaa 190
              ||||||||||||||||||||
Sbjct: 107537 caaaagagctacaatccaaa 107518

>dbj|AK124030.1| Homo sapiens cDNA FLJ42036 fis, clone SPLEN2038345
          Length = 2669

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 caaaagagctacaatccaaa 190
           ||||||||||||||||||||
Sbjct: 899 caaaagagctacaatccaaa 918

>gb|AC067942.6| Homo sapiens BAC clone RP11-791G16 from 4, complete sequence
          Length = 187399

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   tgagggctttcttgcaggga 282
             ||||||||||||||||||||
Sbjct: 99767 tgagggctttcttgcaggga 99786

>ref|XM_681674.1| PREDICTED: Danio rerio similar to Enhancer of rudimentary homolog
           (LOC572860), mRNA
          Length = 909

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  taaagtataacatttacaca 39
           ||||||||||||||||||||
Sbjct: 742 taaagtataacatttacaca 761

>ref|NM_073072.3| Caenorhabditis elegans F25B3.6 (F25B3.6) mRNA, complete cds
          Length = 2356

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   caaattcaaactaaaatcga 66
            ||||||||||||||||||||
Sbjct: 1314 caaattcaaactaaaatcga 1333

>ref|NM_131228.1| Danio rerio enhancer of rudimentary homolog (Drosophila) (erh),
           mRNA
          Length = 823

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  taaagtataacatttacaca 39
           ||||||||||||||||||||
Sbjct: 636 taaagtataacatttacaca 655

>dbj|BS000029.1| Pan troglodytes chromosome 22 clone:RP43-172K02, map 22, complete
             sequences
          Length = 173573

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 54    aaactaaaatcgaacttacagatattca 81
             ||||||||| | ||||||||||||||||
Sbjct: 67636 aaactaaaacctaacttacagatattca 67663

>emb|BX664607.21| Zebrafish DNA sequence from clone CH211-132B12 in linkage group 18,
              complete sequence
          Length = 179328

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     ctgcaaattcaaactaaaat 63
              ||||||||||||||||||||
Sbjct: 135791 ctgcaaattcaaactaaaat 135772

>emb|AL929220.13| Zebrafish DNA sequence from clone DKEY-65B13 in linkage group 20,
              complete sequence
          Length = 227539

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     taaagtataacatttacaca 39
              ||||||||||||||||||||
Sbjct: 130978 taaagtataacatttacaca 130959

>gb|AC004814.2|AC004814 Homo sapiens clone 3938P1, complete sequence
          Length = 83030

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   caaaagagctacaatccaaa 190
             ||||||||||||||||||||
Sbjct: 28769 caaaagagctacaatccaaa 28750

>dbj|AP001667.1| Homo sapiens genomic DNA, chromosome 21q, section 11/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 54     aaactaaaatcgaacttacagatattca 81
              ||||||||| | ||||||||||||||||
Sbjct: 315600 aaactaaaacctaacttacagatattca 315627

>gb|U66872.1|DRU66872 Danio rerio enhancer of rudimentary homolog mRNA, complete cds
          Length = 823

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  taaagtataacatttacaca 39
           ||||||||||||||||||||
Sbjct: 636 taaagtataacatttacaca 655

>gb|AC140491.4| Mus musculus BAC clone RP24-136G21 from 9, complete sequence
          Length = 163404

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    tctttttaaagtataacatttaca 37
             |||||||||||| |||||||||||
Sbjct: 25668 tctttttaaagtttaacatttaca 25645

>gb|AC162280.4| Mus musculus chromosome 3, clone RP24-240C19, complete sequence
          Length = 165299

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tataacatttacacaggatc 44
             ||||||||||||||||||||
Sbjct: 76802 tataacatttacacaggatc 76783

>dbj|AP000473.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B291N6,
             LL56-APP region, complete sequence
          Length = 155448

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 54    aaactaaaatcgaacttacagatattca 81
             ||||||||| | ||||||||||||||||
Sbjct: 62105 aaactaaaacctaacttacagatattca 62132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,016,727
Number of Sequences: 3902068
Number of extensions: 3016727
Number of successful extensions: 54847
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54787
Number of HSP's gapped (non-prelim): 60
length of query: 344
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 322
effective length of database: 17,147,199,772
effective search space: 5521398326584
effective search space used: 5521398326584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)