ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44 30 4.5
2YTRE_LEPBI (P20464) Hypothetical 22 kDa protein in trpE 5'region 29 5.9
3FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Pepti... 29 7.7

>ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44|
          Length = 258

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 485 EEEEEDGHRQDKDE--GLKMKLFRRFHHHHAHDSENEVDEVEELARKLG 345
           EE EE G ++ K E  GLK K+  + HH    D+   V+ V E  +K G
Sbjct: 93  EEVEEGGEKKKKKEKKGLKEKIEEKIHHKE-EDTSVPVEVVTEPEKKKG 140



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>YTRE_LEPBI (P20464) Hypothetical 22 kDa protein in trpE 5'region|
          Length = 189

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +2

Query: 74  YINPSGNVTWNTKEKK*EMAE------HYTSRITHSTGNRLTKVIKRPNQP 208
           ++NPSG+ +WN   +K  + +      H+T  +    G      + +P QP
Sbjct: 135 HLNPSGDRSWNINSQKASICKGCPSSAHFTETLEFHYGKHHQTYVTKPQQP 185



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>FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 437

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 482 EEEEDGHRQDKDEGLKMKLFRRFHHHHAHDSENEVDEVEELARK 351
           EE E    ++ +E  K    ++  HHH HD +++ D   +   K
Sbjct: 240 EEIEASEEEESEEEEKKSKHKKHDHHHHHDHDHDHDHEHKSKNK 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,267,513
Number of Sequences: 219361
Number of extensions: 921476
Number of successful extensions: 3734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3634
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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