Clone Information

BLAST Search Result

Clone Name	rbart42f03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC027660.2\| Oryza sativa (japonica cultivar-group) chromosome...	278	2e-71
2	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	278	2e-71
3	dbj\|AK065828.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
4	dbj\|AK061548.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
5	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	278	2e-71
6	ref\|NM_196478.1\| Oryza sativa (japonica cultivar-group) unknown ...	276	6e-71
7	dbj\|AK098975.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	270	4e-69
8	gb\|BT016704.1\| Zea mays clone Contig537 mRNA sequence	194	2e-46
9	gb\|AY108933.1\| Zea mays PCO071536 mRNA sequence	141	2e-30
10	gb\|AY664417.1\| Zea mays cultivar Mo17 locus 9002, complete sequence	141	2e-30
11	gb\|AY664413.1\| Zea mays cultivar B73 locus 9002, complete sequence	141	2e-30
12	gb\|AY109606.1\| Zea mays CL4591_1 mRNA sequence	129	9e-27
13	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	74	5e-10
14	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	74	5e-10
15	gb\|AC107225.2\| Oryza sativa (japonica cultivar-group) chromosome...	74	5e-10
16	gb\|BT017965.1\| Zea mays clone EL01N0523F06.c mRNA sequence	62	2e-06
17	gb\|AY587604.1\| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1)...	52	0.002
18	ref\|XM_469992.1\| Oryza sativa (japonica cultivar-group), mRNA	50	0.007
19	gb\|AC108906.9\| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom...	50	0.007
20	dbj\|AK059759.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.007
21	gb\|AY110013.1\| Zea mays CL32377_1 mRNA sequence	48	0.027
22	gb\|AC166079.2\| Mus musculus BAC clone RP23-51L15 from chromosome...	42	1.7
23	gb\|AY505071.1\| Newcastle disease virus strain gamefowl/U.S.(CA)/...	42	1.7
24	gb\|AY562987.1\| Newcastle disease virus isolate gamefowl/U.S.(CA)...	42	1.7
25	gb\|AC153802.1\| Mus musculus 6 NOVECTOR RP24-79H20 (Roswell Park ...	40	6.6
26	gb\|AC163608.2\| Mus musculus chromosome 1, clone RP24-185M14, com...	40	6.6
27	emb\|CT009748.6\| Mouse DNA sequence from clone RP23-120N6 on chro...	40	6.6
28	gb\|AC117255.3\| Mus musculus BAC clone RP24-481E4 from 3, complet...	40	6.6
29	gb\|AC113524.9\| Mus musculus chromosome 6, clone RP23-120I17, com...	40	6.6
30	gb\|AC101994.3\| Mus musculus chromosome 1, clone RP24-406F14, com...	40	6.6
31	emb\|BX004972.12\| Zebrafish DNA sequence from clone CH211-166A6 i...	40	6.6
32	gb\|AC010571.8\| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell...	40	6.6
33	gb\|AC010068.8\| Drosophila melanogaster 3L BAC RP98-15K24 (Roswel...	40	6.6
34	dbj\|AK156867.1\| Mus musculus activated spleen cDNA, RIKEN full-l...	40	6.6
35	gb\|AY935498.1\| Newcastle disease virus isolate 99-1435, complete...	40	6.6
36	gb\|AY935497.1\| Newcastle disease virus isolate 99-1997PR-32, com...	40	6.6
37	gb\|AY935496.1\| Newcastle disease virus isolate 99-0868lo, comple...	40	6.6
38	gb\|AY935495.1\| Newcastle disease virus isolate 99-0868hi, comple...	40	6.6
39	gb\|AY935494.1\| Newcastle disease virus isolate 99-0655, complete...	40	6.6
40	gb\|AY935492.1\| Newcastle disease virus isolate 98-1249, complete...	40	6.6
41	gb\|AY935491.1\| Newcastle disease virus isolate 98-1154, complete...	40	6.6
42	gb\|AY935489.1\| Newcastle disease virus isolate 01-1108, complete...	40	6.6
43	gb\|AY225110.1\| Newcastle disease virus strain HB92 isolate V4, c...	40	6.6
44	gb\|AE003595.3\| Drosophila melanogaster chromosome 3L, section 76...	40	6.6
45	emb\|CT025661.8\| Mouse DNA sequence from clone RP23-357H5 on chro...	40	6.6

>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC
             nbxb0045B21, complete sequence
          Length = 152397

 Score =  278 bits (140), Expect = 2e-71
 Identities = 239/272 (87%)
 Strand = Plus / Plus

                                                                         
Query: 216   aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275
             |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 82086 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 82145

                                                                         
Query: 276   caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335
             |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 82146 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 82205

                                                                         
Query: 336   attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395
              |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 82206 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 82265

                                                                         
Query: 396   cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455
             ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 82266 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 82325

                                             
Query: 456   caaactgtcagggtctgtcgttgcatcagggt 487
             ||  ||||||| |||||| |||||||| ||||
Sbjct: 82326 caggctgtcagagtctgttgttgcatcggggt 82357

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  278 bits (140), Expect = 2e-71
 Identities = 239/272 (87%)
 Strand = Plus / Plus

                                                                            
Query: 216      aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275
                |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 13913460 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 13913519

                                                                            
Query: 276      caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335
                |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 13913520 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 13913579

                                                                            
Query: 336      attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395
                 |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 13913580 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 13913639

                                                                            
Query: 396      cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455
                ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 13913640 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 13913699

                                                
Query: 456      caaactgtcagggtctgtcgttgcatcagggt 487
                ||  ||||||| |||||| |||||||| ||||
Sbjct: 13913700 caggctgtcagagtctgttgttgcatcggggt 13913731

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>dbj|AK065828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G23, full
           insert sequence
          Length = 1152

 Score =  278 bits (140), Expect = 2e-71
 Identities = 239/272 (87%)
 Strand = Plus / Minus

                                                                       
Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275
           |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 617 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 558

                                                                       
Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335
           |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 557 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 498

                                                                       
Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395
            |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 497 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 438

                                                                       
Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455
           ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 437 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 378

                                           
Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487
           ||  ||||||| |||||| |||||||| ||||
Sbjct: 377 caggctgtcagagtctgttgttgcatcggggt 346

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>dbj|AK061548.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A08, full
           insert sequence
          Length = 1212

 Score =  278 bits (140), Expect = 2e-71
 Identities = 239/272 (87%)
 Strand = Plus / Minus

                                                                       
Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275
           |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 971 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 912

                                                                       
Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335
           |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 911 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 852

                                                                       
Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395
            |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 851 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 792

                                                                       
Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455
           ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 791 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 732

                                           
Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487
           ||  ||||||| |||||| |||||||| ||||
Sbjct: 731 caggctgtcagagtctgttgttgcatcggggt 700

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  278 bits (140), Expect = 2e-71
 Identities = 239/272 (87%)
 Strand = Plus / Plus

                                                                            
Query: 216      aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275
                |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 13920802 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 13920861

                                                                            
Query: 276      caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335
                |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 13920862 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 13920921

                                                                            
Query: 336      attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395
                 |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 13920922 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 13920981

                                                                            
Query: 396      cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455
                ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 13920982 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 13921041

                                                
Query: 456      caaactgtcagggtctgtcgttgcatcagggt 487
                ||  ||||||| |||||| |||||||| ||||
Sbjct: 13921042 caggctgtcagagtctgttgttgcatcggggt 13921073

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>ref|NM_196478.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0045B21.11), mRNA
          Length = 1110

 Score =  276 bits (139), Expect = 6e-71
 Identities = 229/259 (88%)
 Strand = Plus / Minus

                                                                        
Query: 229  cacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttg 288
            ||||| ||||||||||||| |||||||||||||||||| || || |||||||| ||||| 
Sbjct: 1061 cacacattgcagctcttccggcagaagccaggtgcttcattggtacccaccatgtagttc 1002

                                                                        
Query: 289  gggttcttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcg 348
            || |||||||| |||||||| || ||||||||||| | ||||||||| ||||||||||||
Sbjct: 1001 ggattcttggcacactcccctactgcagcccactgggggcagaggacgttctcatcctcg 942

                                                                        
Query: 349  cacccgtcaccggaagctccctgcttgcctgagttttcgaaggacctcacatggatccat 408
            |||||||||  |||||||||||||||| | ||| | ||||||||||||||||||||||||
Sbjct: 941  cacccgtcagtggaagctccctgcttgacagagatgtcgaaggacctcacatggatccat 882

                                                                        
Query: 409  ttcgtggcggaccacttctggccttcgatgacggggcagctcccgtgcaaactgtcaggg 468
            || || |||||||||||||| ||||| ||||| ||||||||||||||||  ||||||| |
Sbjct: 881  ttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtgcaggctgtcagag 822

                               
Query: 469  tctgtcgttgcatcagggt 487
            ||||| |||||||| ||||
Sbjct: 821  tctgttgttgcatcggggt 803

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>dbj|AK098975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B02, full
           insert sequence
          Length = 1127

 Score =  270 bits (136), Expect = 4e-69
 Identities = 239/272 (87%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                       
Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275
           |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 972 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 913

                                                                       
Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335
           |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 912 caccatgtagttcggattcttggcacactcccctactgcagcccactggg-gcagaggac 854

                                                                       
Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395
            |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 853 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 794

                                                                       
Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455
           ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 793 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 734

                                           
Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487
           ||  ||||||| |||||| |||||||| ||||
Sbjct: 733 caggctgtcagagtctgttgttgcatcggggt 702

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>gb|BT016704.1| Zea mays clone Contig537 mRNA sequence
          Length = 1224

 Score =  194 bits (98), Expect = 2e-46
 Identities = 209/246 (84%)
 Strand = Plus / Minus

                                                                       
Query: 242 tcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttcttggcgc 301
           |||||| |||||||||||| |||||||| || |||||||| ||||| ||||||||||| |
Sbjct: 986 tcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttcttggcac 927

                                                                       
Query: 302 actccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccgtcaccgg 361
           |||| || || || |||||||| | |||||||| ||| || |||||||| ||||||  ||
Sbjct: 926 actcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccgtcagagg 867

                                                                       
Query: 362 aagctccctgcttgcctgagttttcgaaggacctcacatggatccatttcgtggcggacc 421
           || |   |||||| || | |   || || |||||||||||||||||||| || |||||||
Sbjct: 866 aacccggctgcttcccagggaggtcaaatgacctcacatggatccatttagttgcggacc 807

                                                                       
Query: 422 acttctggccttcgatgacggggcagctcccgtgcaaactgtcagggtctgtcgttgcat 481
           |||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 806 acttctggccttcgattacggggcagctaccgtgcaagctgtcagagtctgtcgttgcat 747

                 
Query: 482 cagggt 487
           ||||||
Sbjct: 746 cagggt 741

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>gb|AY108933.1| Zea mays PCO071536 mRNA sequence
          Length = 676

 Score =  141 bits (71), Expect = 2e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 391 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450
           |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 313 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 254

                                              
Query: 451 ccgtgcaaactgtcagggtctgtcgttgcatcagg 485
           |||||||| ||||||| ||||||||||||||||||
Sbjct: 253 ccgtgcaagctgtcagagtctgtcgttgcatcagg 219



 Score =  109 bits (55), Expect = 9e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                       
Query: 235 ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 294
           ||||||||||||| |||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 469 ttgcagctcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttc 410

                                                                       
Query: 295 ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccg 354
           ||||| ||||| || || || |||||||| | |||||||| ||| || |||||||| |||
Sbjct: 409 ttggcacactcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccg 350

              
Query: 355 tca 357
           |||
Sbjct: 349 tca 347

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>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence
          Length = 366120

 Score =  141 bits (71), Expect = 2e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                         
Query: 391   gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450
             |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 25448 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 25389

                                                
Query: 451   ccgtgcaaactgtcagggtctgtcgttgcatcagg 485
             |||||||| ||||||| ||||||||||||||||||
Sbjct: 25388 ccgtgcaagctgtcagagtctgtcgttgcatcagg 25354



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 93/109 (85%)
 Strand = Plus / Minus

                                                                         
Query: 249   gcagaagccaggtgcttccttcgtgcccaccatatagttggggttcttggcgcactcccc 308
             |||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct: 25590 gcagaagccaggagcttccttggtccccaccatgtagttagggttcttggcacactcacc 25531

                                                              
Query: 309   aacggcagcccactgcgagcagaggacattctcatcctcgcacccgtca 357
              || || |||||||| | |||||||| ||| || |||||||| ||||||
Sbjct: 25530 cacagctgcccactgggggcagaggatattgtcgtcctcgcatccgtca 25482

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>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score =  141 bits (71), Expect = 2e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                         
Query: 391   gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450
             |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 28105 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 28046

                                                
Query: 451   ccgtgcaaactgtcagggtctgtcgttgcatcagg 485
             |||||||| ||||||| ||||||||||||||||||
Sbjct: 28045 ccgtgcaagctgtcagagtctgtcgttgcatcagg 28011



 Score =  109 bits (55), Expect = 9e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                         
Query: 235   ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 294
             ||||||||||||| |||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 28261 ttgcagctcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttc 28202

                                                                         
Query: 295   ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccg 354
             ||||| ||||| || || || |||||||| | |||||||| ||| || |||||||| |||
Sbjct: 28201 ttggcacactcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccg 28142

                
Query: 355   tca 357
             |||
Sbjct: 28141 tca 28139

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>gb|AY109606.1| Zea mays CL4591_1 mRNA sequence
          Length = 1093

 Score =  129 bits (65), Expect = 9e-27
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                       
Query: 391 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450
           |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| 
Sbjct: 755 gacctcacatggatccatttagtcgcggaccacttctggccttcgatggcggggcagcta 696

                                                
Query: 451 ccgtgcaaactgtcagggtctgtcgttgcatcagggt 487
           |||||||| ||||||| |||||| |||| ||||||||
Sbjct: 695 ccgtgcaagctgtcagagtctgttgttgaatcagggt 659



 Score =  115 bits (58), Expect = 1e-22
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                       
Query: 235 ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 294
           ||||||||||||| ||||||||||||||||||||| || |||||||| ||||| ||||||
Sbjct: 911 ttgcagctcttccggcagaagccaggtgcttccttggtccccaccatgtagttagggttc 852

                                                                
Query: 295 ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctc 347
           ||||||||||| || ||||| |||||||     ||||||||||| || |||||
Sbjct: 851 ttggcgcactcgcccacggccgcccactnnnnncagaggacattgtcgtcctc 799

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                           
Query: 389     aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 448
               |||| |||||||||||||||||||| || |||||||||| |||||  ||||| |||||||
Sbjct: 3553340 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 3553281

                        
Query: 449     tcccgtgca 457
               | |||||||
Sbjct: 3553280 ttccgtgca 3553272



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 397      acatggatccatttcgtggcggaccacttctggccttcgat 437
                ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 33219024 acatggatccatttcgttgcagaccatttctcgccttcgat 33219064



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                           
Query: 232     acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 291
               |||||||| ||||||| |||||||||||| | |||  | ||||| ||||| ||   ||||
Sbjct: 3553491 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 3553432

                                            
Query: 292     ttcttggcgcactccccaacggcagccca 320
               |||||||| ||||| ||| | ||||||||
Sbjct: 3553431 ttcttggcacactctccagcagcagccca 3553403



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 232     acgttgcagctcttcctgcagaagccagg 260
               |||||||| ||||||| ||||||||||||
Sbjct: 3550608 acgttgcaactcttccggcagaagccagg 3550580



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                           
Query: 288     ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 346
               |||||||||||| ||||| ||  |||||||||| ||| |||||||| ||||  |||||||
Sbjct: 3550549 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 3550491

                    
Query: 347     cgcac 351
               |||||
Sbjct: 3550490 cgcac 3550486

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                           
Query: 389     aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 448
               |||| |||||||||||||||||||| || |||||||||| |||||  ||||| |||||||
Sbjct: 3553451 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 3553392

                        
Query: 449     tcccgtgca 457
               | |||||||
Sbjct: 3553391 ttccgtgca 3553383



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 397      acatggatccatttcgtggcggaccacttctggccttcgat 437
                ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 33309534 acatggatccatttcgttgcagaccatttctcgccttcgat 33309574



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                           
Query: 232     acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 291
               |||||||| ||||||| |||||||||||| | |||  | ||||| ||||| ||   ||||
Sbjct: 3553602 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 3553543

                                            
Query: 292     ttcttggcgcactccccaacggcagccca 320
               |||||||| ||||| ||| | ||||||||
Sbjct: 3553542 ttcttggcacactctccagcagcagccca 3553514



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 232     acgttgcagctcttcctgcagaagccagg 260
               |||||||| ||||||| ||||||||||||
Sbjct: 3550719 acgttgcaactcttccggcagaagccagg 3550691



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                           
Query: 288     ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 346
               |||||||||||| ||||| ||  |||||||||| ||| |||||||| ||||  |||||||
Sbjct: 3550660 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 3550602

                    
Query: 347     cgcac 351
               |||||
Sbjct: 3550601 cgcac 3550597

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>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0026H19, complete sequence
          Length = 150620

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                         
Query: 389   aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 448
             |||| |||||||||||||||||||| || |||||||||| |||||  ||||| |||||||
Sbjct: 70993 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 70934

                      
Query: 449   tcccgtgca 457
             | |||||||
Sbjct: 70933 ttccgtgca 70925



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                         
Query: 232   acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 291
             |||||||| ||||||| |||||||||||| | |||  | ||||| ||||| ||   ||||
Sbjct: 71144 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 71085

                                          
Query: 292   ttcttggcgcactccccaacggcagccca 320
             |||||||| ||||| ||| | ||||||||
Sbjct: 71084 ttcttggcacactctccagcagcagccca 71056



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 232   acgttgcagctcttcctgcagaagccagg 260
             |||||||| ||||||| ||||||||||||
Sbjct: 68261 acgttgcaactcttccggcagaagccagg 68233



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                         
Query: 288   ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 346
             |||||||||||| ||||| ||  |||||||||| ||| |||||||| ||||  |||||||
Sbjct: 68202 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 68144

                  
Query: 347   cgcac 351
             |||||
Sbjct: 68143 cgcac 68139

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>gb|BT017965.1| Zea mays clone EL01N0523F06.c mRNA sequence
          Length = 1150

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 385 tcgaaggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacgggg 444
           ||||| ||||| || |||||||||||||| || ||||| |||| ||| ||||| || |||
Sbjct: 807 tcgaacgacctgacgtggatccatttcgtcgccgaccatttctcgccctcgatcaccggg 748

                      
Query: 445 cagctcccgtg 455
           |||||||||||
Sbjct: 747 cagctcccgtg 737

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>gb|AY587604.1| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1) mRNA, complete
           cds
          Length = 1201

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 388 aaggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcag 447
           |||||||  ||||||||||||||||| || ||||| || |  ||||| || || ||||||
Sbjct: 845 aaggaccgaacatggatccatttcgttgctgaccatttttcaccttcaattacagggcag 786

                         
Query: 448 ctcccgtgcaaact 461
           || |||||||||||
Sbjct: 785 ctaccgtgcaaact 772

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>ref|XM_469992.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 900

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 397 acatggatccatttcgtggcggaccacttctggccttcgat 437
           ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 725 acatggatccatttcgttgcagaccatttctcgccttcgat 685

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>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
             sequence
          Length = 144487

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 397   acatggatccatttcgtggcggaccacttctggccttcgat 437
             ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 25531 acatggatccatttcgttgcagaccatttctcgccttcgat 25491

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>dbj|AK059759.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E11, full
           insert sequence
          Length = 1114

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 397 acatggatccatttcgtggcggaccacttctggccttcgat 437
           ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 739 acatggatccatttcgttgcagaccatttctcgccttcgat 699

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>gb|AY110013.1| Zea mays CL32377_1 mRNA sequence
          Length = 840

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 402 gatccatttcgtggcggaccacttctggccttcgatgacggggcagct 449
           ||||||||| ||||||  ||| |||| ||||| |||||||||||||||
Sbjct: 183 gatccatttggtggcgacccatttctcgcctttgatgacggggcagct 230

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>gb|AC166079.2| Mus musculus BAC clone RP23-51L15 from chromosome 7, complete sequence
          Length = 193749

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      cagaaatactataaaagtatg 25
              |||||||||||||||||||||
Sbjct: 174549 cagaaatactataaaagtatg 174529

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>gb|AY505071.1| Newcastle disease virus strain gamefowl/U.S.(CA)/211472/02
           RNA-dependent RNA polymerase (L) gene, complete cds
          Length = 6615

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 74  aaattaactgggctaccactt 94
           |||||||||||||||||||||
Sbjct: 100 aaattaactgggctaccactt 120

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>gb|AY562987.1| Newcastle disease virus isolate gamefowl/U.S.(CA)/211472/02, complete
            genome
          Length = 15192

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   aaattaactgggctaccactt 94
            |||||||||||||||||||||
Sbjct: 8486 aaattaactgggctaccactt 8506

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>gb|AC153802.1| Mus musculus 6 NOVECTOR RP24-79H20 (Roswell Park Cancer Institute
              (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 189471

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     atatggacgtcacaagtccc 67
              ||||||||||||||||||||
Sbjct: 178657 atatggacgtcacaagtccc 178638

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>gb|AC163608.2| Mus musculus chromosome 1, clone RP24-185M14, complete sequence
          Length = 161555

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   ccaaaagcatccagcaaaca 151
             ||||||||||||||||||||
Sbjct: 83539 ccaaaagcatccagcaaaca 83558

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>emb|CT009748.6| Mouse DNA sequence from clone RP23-120N6 on chromosome 9, complete
              sequence
          Length = 235839

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    aaagcatccagcaaacagcc 154
              ||||||||||||||||||||
Sbjct: 226428 aaagcatccagcaaacagcc 226409

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>gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complete sequence
          Length = 209706

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    agaagccaggtgcttccttc 270
              ||||||||||||||||||||
Sbjct: 132694 agaagccaggtgcttccttc 132675

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>gb|AC113524.9| Mus musculus chromosome 6, clone RP23-120I17, complete sequence
          Length = 216807

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     atatggacgtcacaagtccc 67
              ||||||||||||||||||||
Sbjct: 157301 atatggacgtcacaagtccc 157320

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>gb|AC101994.3| Mus musculus chromosome 1, clone RP24-406F14, complete sequence
          Length = 164170

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    ccaaaagcatccagcaaaca 151
              ||||||||||||||||||||
Sbjct: 120554 ccaaaagcatccagcaaaca 120573

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>emb|BX004972.12| Zebrafish DNA sequence from clone CH211-166A6 in linkage group 8,
             complete sequence
          Length = 151374

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aaagcatccagcaaacagcc 154
             ||||||||||||||||||||
Sbjct: 70728 aaagcatccagcaaacagcc 70709

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>gb|AC010571.8| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell Park Cancer Institute
              Drosophila BAC library) complete sequence
          Length = 169138

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     gtatatggacagtatatgga 54
              ||||||||||||||||||||
Sbjct: 143021 gtatatggacagtatatgga 143040

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>gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 178607

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   gtatatggacagtatatgga 54
            ||||||||||||||||||||
Sbjct: 5480 gtatatggacagtatatgga 5499

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>dbj|AK156867.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830104B06 product:ancient ubiquitous
            protein, full insert sequence
          Length = 2398

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  ctcttcctgcagaagccagg 260
            ||||||||||||||||||||
Sbjct: 2175 ctcttcctgcagaagccagg 2194

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>gb|AY935498.1| Newcastle disease virus isolate 99-1435, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY935497.1| Newcastle disease virus isolate 99-1997PR-32, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY935496.1| Newcastle disease virus isolate 99-0868lo, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY935495.1| Newcastle disease virus isolate 99-0868hi, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY935494.1| Newcastle disease virus isolate 99-0655, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY935492.1| Newcastle disease virus isolate 98-1249, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY935491.1| Newcastle disease virus isolate 98-1154, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY935489.1| Newcastle disease virus isolate 01-1108, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AY225110.1| Newcastle disease virus strain HB92 isolate V4, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aaattaactgggctaccact 93
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499

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>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete
              sequence
          Length = 294272

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     gtatatggacagtatatgga 54
              ||||||||||||||||||||
Sbjct: 210740 gtatatggacagtatatgga 210759

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>emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chromosome 9, complete
             sequence
          Length = 219201

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ctcttcctgcagaagccagg 260
             ||||||||||||||||||||
Sbjct: 83763 ctcttcctgcagaagccagg 83744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,636,257
Number of Sequences: 3902068
Number of extensions: 3636257
Number of successful extensions: 79549
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79362
Number of HSP's gapped (non-prelim): 180
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result