>AATF_DROME (Q9VM95) Protein AATF-like|
          Length = 488

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -2

Query: 470 FYALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANFXXXXXXXXXXXASK--LFENLF 303
           F  L+K + K +K VD RASK RK+RY VH K+ NF           ASK  L+++LF
Sbjct: 430 FVELQKLRQKMKKKVDTRASKGRKLRYVVHNKLINFMAPNESSDWTDASKSELYKSLF 487

>BFR2_NEUCR (Q7S6P8) Protein bfr-2|
          Length = 636

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = -2

Query: 452 KQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           K+ K RK VDR+ASK RK+R++VHEK+ NF
Sbjct: 548 KEAKTRKQVDRKASKGRKLRFTVHEKLQNF 577

>AATF_CHICK (Q5ZIM6) Protein AATF (Apoptosis-antagonizing transcription factor)|
          Length = 574

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
 Frame = -2

Query: 464 ALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANFXX--XXXXXXXXXASKLFENLFG 300
           A++K ++K +K VDR+ASK RKIRY VH K+ +F              ++L+ +LFG
Sbjct: 491 AIQKLRSKIKKKVDRKASKGRKIRYHVHSKLVSFMAPIDHCTMNDDARTELYRSLFG 547

>BFR2_SCHPO (Q9US05) Protein bfr2|
          Length = 452

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = -2

Query: 455 KKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           KKQ +K++ VD +ASK RKIRY VH+K+ NF
Sbjct: 364 KKQKQKKENVDTKASKGRKIRYHVHDKLQNF 394

>BFR2_GIBZE (Q4I327) Protein BFR2|
          Length = 538

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = -2

Query: 452 KQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           K  K RK VDR+ASK RK+R++VHEK+ NF
Sbjct: 458 KDVKNRKNVDRKASKGRKMRFTVHEKMQNF 487

>AATF_MOUSE (Q9JKX4) Protein AATF (Apoptosis-antagonizing transcription factor)|
           (Rb-binding protein Che-1) (Traube protein)
          Length = 526

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = -2

Query: 464 ALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANFXX--XXXXXXXXXASKLFENLFGMGN 291
           A++K ++K RK VDR+ASK RK+R+ V  K+ +F              ++LF +LFG  N
Sbjct: 459 AIQKLRSKIRKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTAMSDDARTELFRSLFGQLN 518

>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)|
          Length = 523

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = -2

Query: 464 ALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANFXX--XXXXXXXXXASKLFENLFGMGN 291
           A++K ++K RK VDR+ASK RK+R+ V  K+ +F              ++L+ +LFG  N
Sbjct: 456 AIQKLRSKIRKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTAMNDEARTELYRSLFGQLN 515

>BFR2_CRYNE (Q5KBS9) Protein BFR2|
          Length = 463

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 488 GASESAFYALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANFXX---XXXXXXXXXASKL 318
           G+  +A     +++ KK++  +R  SK RK+RY+VHEK  NF                +L
Sbjct: 365 GSGPAADLTHLRREKKKKREAERGGSKGRKLRYTVHEKAQNFVVPIPLSHGWHEEQVDEL 424

Query: 317 FENLFG 300
           F +LFG
Sbjct: 425 FSSLFG 430

>BFR2_ASHGO (Q75EZ2) Protein BFR2|
          Length = 528

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -2

Query: 455 KKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           + QNK +K VD +ASK RK+ YSV E IAN+
Sbjct: 444 RSQNKLKKNVDTKASKGRKLNYSVQEPIANY 474

>BFR2_CANAL (Q5ACL9) Protein BFR2|
          Length = 512

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = -2

Query: 455 KKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           +K NK +  VD +ASK RK+RY V E IANF
Sbjct: 425 QKSNKLKNNVDTKASKGRKLRYHVQEPIANF 455

>BFR2_EMENI (Q5AW04) Protein bfr2|
          Length = 576

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = -2

Query: 452 KQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           +++K ++ VD RASK RK+R+ VHEK+ NF
Sbjct: 489 RKDKVKREVDTRASKGRKMRFDVHEKLQNF 518

>BFR2_ASPFU (Q4WMI1) Protein bfr2|
          Length = 565

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = -2

Query: 452 KQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           +++K ++ VD RASK RK+R+ VHEK+ NF
Sbjct: 478 RKDKVKRDVDTRASKGRKMRFDVHEKLQNF 507

>BFR2_KLULA (Q6CTS8) Protein BFR2|
          Length = 526

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = -2

Query: 455 KKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           + +NK +K +D +ASK RK+ YS+ E IAN+
Sbjct: 439 RSENKLKKNIDTKASKGRKLNYSIQEPIANY 469

>BFR2_USTMA (Q4P5V5) Protein BFR2|
          Length = 581

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 491 GGASESAFYALRKKQN---KKRKLVDRRASKSRKIRYSVHEKIANF 363
           GG + S    L   Q    KK+  VD +ASK RK+RY V++K+ NF
Sbjct: 474 GGGTTSTAVLLSSLQGGGKKKKHNVDTKASKGRKLRYEVNDKLVNF 519

>BFR2_CANGA (Q6FSD4) Protein BFR2|
          Length = 522

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = -2

Query: 494 TGGASESAFYALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           T  A+ SA   + K   K +K VD +ASK RK+ YS+ E IAN+
Sbjct: 423 TSSATNSAII-VSKSNYKLKKNVDTKASKGRKLNYSIQEPIANY 465

>BFR2_YARLI (Q6C9G2) Protein BFR2|
          Length = 495

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -2

Query: 488 GASESAFYALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           G+  S        + K +K VD RASK RK+RY V +K+ NF
Sbjct: 393 GSQSSGVKTWTATKAKTKKNVDTRASKGRKLRYHVQDKVQNF 434

>AATF_HUMAN (Q9NY61) Protein AATF (Apoptosis-antagonizing transcription factor)|
           (Rb-binding protein Che-1)
          Length = 560

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = -2

Query: 464 ALRKKQNKKRKLVDRRASKSRKIRYSVHEKIANFXX--XXXXXXXXXASKLFENLFG 300
           A++K ++K  K VDR+ASK RK+R+ V  K+ +F              ++L+ +LFG
Sbjct: 493 AIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDARTELYRSLFG 549

>BFR2_YEAST (Q06631) Protein BFR2 (Brefeldin A resistance protein 2)|
          Length = 534

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -2

Query: 455 KKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           +  NK +K +D +ASK RK+ YSV + IAN+
Sbjct: 445 RSNNKLKKNIDTKASKGRKLNYSVQDPIANY 475

>BFR2_DEBHA (Q6BXX1) Protein BFR2|
          Length = 514

 Score = 36.2 bits (82), Expect = 0.051
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = -2

Query: 455 KKQNKKRKLVDRRASKSRKIRYSVHEKIANF 363
           ++  K +K +D +ASK RK+RY + E+IANF
Sbjct: 427 QQAQKFKKNIDTKASKGRKLRYHIQEQIANF 457

>AT222_ASPFU (Q4WZY1) Autophagy-related protein 22-2|
          Length = 613

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 41  FKNTSITLLLILFYV*QMKNPKASY*SDQQLIFITLIFYIGHACVGTSFVVLLQF 205
           ++N   TLLL   ++  M +    + +    I  +L+  +G  C+G+SFVVL  F
Sbjct: 146 YENNRKTLLLAFGFIGSMTSMLFIFIAPPVYILASLLVVVGVTCLGSSFVVLNSF 200

>CHEA_BORBU (Q44737) Chemotaxis protein cheA (EC 2.7.13.3)|
          Length = 864

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 280 DFCRLPIPNKFSNNFEAIGGTVIGTGAMKLAIFS*TLYLIFLLFEARRST 429
           DF   PI +KFS++   +G T +G G + L I       +F LF+ ++ T
Sbjct: 819 DFVVKPIKDKFSSSAGIVGATTLGNGKVVLIID------VFKLFDLQKDT 862

>TEV2_BPT4 (P07072) Intron-associated endonuclease 2 (EC 3.1.-.-) (I-TevII)|
          Length = 258

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 240 EQHFGHLLKSDRG*LLQVAHSKQILEQFRSHWRNRHRHRGHEISNL 377
           E+H   L  + +G +L + H  +I E+   H++N  R   H  +N+
Sbjct: 112 EEHKQKLSNAHKGKILSLKHKDKIREKLIEHYKNNSRSEAHVKNNI 157

>OSTA_ERWCT (Q6D0E3) Organic solvent tolerance protein precursor|
          Length = 787

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 357 PGAYDGSSNGFEIVREFVWNGQP 289
           P A  GSSNGFE++  + WN  P
Sbjct: 231 PNAKYGSSNGFELLTPYYWNIAP 253

>DECA_DROSI (P91706) Protein decapentaplegic precursor (Protein DPP-C)|
          Length = 593

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 297 HSKQILEQFRSHWRNRHRHRGHEISNLLVNTVPYLSAF*SAAINEFSFLIL 449
           H+K  +++ RSH +  H HR H+      +T  + S+   +   E   L+L
Sbjct: 136 HNKMAVKEQRSHHKKSHHHRSHQPKQASASTESHQSSSIESIFVEEPTLVL 186

>DECA_DROME (P07713) Protein decapentaplegic precursor (Protein DPP-C)|
          Length = 588

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 297 HSKQILEQFRSHWRNRHRHRGHEISNLLVNTVPYLSAF*SAAINEFSFLIL 449
           H+K  +++ RSH +  H HR H+      +T  + S+   +   E   L+L
Sbjct: 131 HNKMAVKEQRSHHKKSHHHRSHQPKQASASTESHQSSSIESIFVEEPTLVL 181

>VGLM_SHV21 (Q01017) Glycoprotein M|
          Length = 366

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 146 LIFYIGHA-CVGTSFVVLLQFHILASITRKIA*TTFW 253
           L+F +G    +G SF +L+   +LASI      TTFW
Sbjct: 220 LVFSLGFMMAIGNSFYILVSDTVLASINLYFVLTTFW 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,068,877
Number of Sequences: 219361
Number of extensions: 1272802
Number of successful extensions: 3270
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3270
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)