ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DDHD1_MOUSE (Q80YA3) Probable phospholipase DDHD1 (EC 3.1.1.-) (... 30 3.5
2PURA_STRAW (Q82ER6) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 29 4.5
3VATA_PYRAB (Q9UXU7) V-type ATP synthase alpha chain (EC 3.6.3.14... 29 5.9
4VATA_PYRHO (O57728) V-type ATP synthase alpha chain (EC 3.6.3.14... 29 5.9
5VPRT_SRV2 (P51518) Protease (EC 3.4.23.-) 29 5.9
6VATA_PYRFU (Q8U4A6) V-type ATP synthase alpha chain (EC 3.6.3.14... 28 7.7

>DDHD1_MOUSE (Q80YA3) Probable phospholipase DDHD1 (EC 3.1.1.-) (DDHD domain|
           protein 1) (Phosphatidic acid-preferring phospholipase
           A1 homolog) (PA-PLA1)
          Length = 547

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 313 TKFYRSDALQPAVPAEDPVEDRRQPHA 393
           ++F RS A QP+ P++D +ED ++P A
Sbjct: 410 SRFGRSSASQPSEPSKDSLEDDKKPSA 436



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>PURA_STRAW (Q82ER6) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 427

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 174 FYLHVLPQQIIVPICTYA*GDVLLIDTIVSFS 79
           + LH+LP  I+ P CT   G+ +++D  V FS
Sbjct: 50  YALHLLPSGILTPECTPVIGNGVVVDPSVLFS 81



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>VATA_PYRAB (Q9UXU7) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type|
           ATPase subunit A) [Contains: Pab atpA intein (Pab VMA
           intein)]
          Length = 1017

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 209 GGWITNLISN*VILAKLQRWSDRMILLYIG 298
           GG +  L+ N V   +L +WSD  +++YIG
Sbjct: 660 GGNMPTLLHNTVTQHQLAKWSDAQVVIYIG 689



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>VATA_PYRHO (O57728) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type|
           ATPase subunit A) [Contains: Endonuclease PI-Pho2 (EC
           3.1.-.-) (Pho atpA intein) (Pho VMA intein)]
          Length = 964

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 209 GGWITNLISN*VILAKLQRWSDRMILLYIG 298
           GG +  L+ N V   +L +WSD  +++YIG
Sbjct: 607 GGNMPTLLHNTVTQHQLAKWSDAQVVIYIG 636



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>VPRT_SRV2 (P51518) Protease (EC 3.4.23.-)|
          Length = 314

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 211 WMDNKSNLELGDFGEATTLVRQDDLIIHW 297
           W+D K+   L D G   T+++Q+D   HW
Sbjct: 177 WLDGKAFTGLIDTGADVTIIKQEDWPSHW 205



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>VATA_PYRFU (Q8U4A6) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type|
           ATPase subunit A) [Contains: Endonuclease PI-Pfu2 (EC
           3.1.-.-) (Pfu atpA intein) (Pfu VMA intein)]
          Length = 1013

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 209 GGWITNLISN*VILAKLQRWSDRMILLYIG 298
           GG +  L+ N V   +L +WSD  +++YIG
Sbjct: 656 GGNMPTLLHNTVTQHQLAKWSDAQVVVYIG 685


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,681,605
Number of Sequences: 219361
Number of extensions: 934397
Number of successful extensions: 2498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2498
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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