>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds
          Length = 1180

 Score =  597 bits (301), Expect = e-167
 Identities = 355/373 (95%)
 Strand = Plus / Minus

                                                                        
Query: 69   ctagtggaaatgaaaatgacacaattgtgtcaatcaacaatacatcgccttacgcgtacg 128
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1180 ctagtggaaatgaaaatgacacaattgtgtcaatcaacaatacattgccttacacgtacg 1121

                                                                        
Query: 129  tacatataggtacaatgatttgctgcggcagtacgtgtagatagaaaggtttcctgcagc 188
            ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 1120 tacatataggtacaatgatttgctgcggcagtacgtgtagatacaaagatttcctgcagc 1061

                                                                        
Query: 189  agcgaatctaaagccgttttggtggatggataacaaatctaatctcgaattaggtgattt 248
            ||||||||||| |||| ||||||| |||||||| |||| |||||||||||||||||||||
Sbjct: 1060 agcgaatctaaggccgctttggtgaatggataagaaatttaatctcgaattaggtgattt 1001

                                                                        
Query: 249  tggcgaagctacaacgttggtcagacaggatgatcttattatacattggtctccctttat 308
            ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1000 tggcgaagctataacgttggtcagacaggatgatcttattatacattgttctccctttat 941

                                                                        
Query: 309  ttcgacgaaattctatcgatcagatgctctgcagcctgccgttcccgctgaagatcctgt 368
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 940  ttcgacgaaatagtatcgatcagatgctctgcagcctgccgttcccgctgaagatccggt 881

                                                                        
Query: 369  tgaggatcgccgccagcctcacgcccccctgagcgagcctcttctgaacgaccggcagcg 428
            ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 880  tgaggatggccgccagcctcaagcccccctgggcgagcctcttctgaacgaccggcagcg 821

                         
Query: 429  ccttgaagtagta 441
            | |||||||||||
Sbjct: 820  ctttgaagtagta 808

>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene)
          Length = 1139

 Score =  168 bits (85), Expect = 1e-38
 Identities = 130/143 (90%), Gaps = 4/143 (2%)
 Strand = Plus / Minus

                                                                       
Query: 302 cctttatttcgacgaaattctatcgatcagatgctctgcagcctgccgttc---ccgctg 358
           |||||||||||| ||||||  | ||||||||||||||||||| ||||||||   ||||||
Sbjct: 956 cctttatttcgatgaaattgca-cgatcagatgctctgcagcttgccgttcttcccgctg 898

                                                                       
Query: 359 aagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcctcttctgaacg 418
           ||||||| ||||||||||||||||||||| ||||| |||||||||| || ||||||||||
Sbjct: 897 aagatccggttgaggatcgccgccagcctgacgccgccctgagcgatccgcttctgaacg 838

                                  
Query: 419 accggcagcgccttgaagtagta 441
           |||||||||||||||||||||||
Sbjct: 837 accggcagcgccttgaagtagta 815

>gb|AY108503.1| Zea mays PCO102923 mRNA sequence
          Length = 476

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                       
Query: 362 atcctgttgaggatcgccgccagcctcacgcccccctgagcgagcctcttctgaacgacc 421
           ||||||||||||||||| |||||||| ||||| || || |||| |||||||||||| |||
Sbjct: 105 atcctgttgaggatcgcggccagcctgacgcctccttgcgcgatcctcttctgaaccacc 46

                   
Query: 422 ggcagcgc 429
           ||||||||
Sbjct: 45  ggcagcgc 38

>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds
          Length = 1283

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 90/107 (84%), Gaps = 3/107 (2%)
 Strand = Plus / Minus

                                                                       
Query: 327 atcagatgctctgcagcctgc---cgttcccgctgaagatcctgttgaggatcgccgcca 383
           |||||||||||||||||||||     ||||| |||||||||  ||| |||||| ||||||
Sbjct: 956 atcagatgctctgcagcctgctattcttcccactgaagatctggttaaggatcaccgcca 897

                                                          
Query: 384 gcctcacgcccccctgagcgagcctcttctgaacgaccggcagcgcc 430
           |||||||||| |||||||| | ||||||||  || ||||||| ||||
Sbjct: 896 gcctcacgcctccctgagctatcctcttctcgacaaccggcaacgcc 850

>ref|XM_474151.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 349 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 408
           ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 855 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 796

                             
Query: 409 cttctgaacgaccggcag 426
           ||||||||| || |||||
Sbjct: 795 cttctgaacaacaggcag 778

>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                         
Query: 349   gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 408
             ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 62466 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 62407

                               
Query: 409   cttctgaacgaccggcag 426
             ||||||||| || |||||
Sbjct: 62406 cttctgaacaacaggcag 62389

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                            
Query: 349      gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 408
                ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 33290205 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 33290146

                                  
Query: 409      cttctgaacgaccggcag 426
                ||||||||| || |||||
Sbjct: 33290145 cttctgaacaacaggcag 33290128

>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
           insert sequence
          Length = 1146

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 349 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 408
           ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 881 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 822

                             
Query: 409 cttctgaacgaccggcag 426
           ||||||||| || |||||
Sbjct: 821 cttctgaacaacaggcag 804

>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full
           insert sequence
          Length = 484

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 349 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 408
           ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 256 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 197

                             
Query: 409 cttctgaacgaccggcag 426
           ||||||||| || |||||
Sbjct: 196 cttctgaacaacaggcag 179

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 371     aggatcgccgccagcctcacgcccc 395
               ||||||||||||||| |||||||||
Sbjct: 3331322 aggatcgccgccagcgtcacgcccc 3331346

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 333     tgctctgcagcctgccgttcccgct 357
               |||||||||||||||||| ||||||
Sbjct: 2127589 tgctctgcagcctgccgtgcccgct 2127565

>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 304     tttatttcgacgaaattctat 324
               |||||||||||||||||||||
Sbjct: 1835409 tttatttcgacgaaattctat 1835429

>gb|AY501269.1| HIV-1 isolate LTNP3.2-13 from Spain envelope glycoprotein (env)
           gene, partial cds
          Length = 585

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  ggaaatgaaaatgacacaat 93
           ||||||||||||||||||||
Sbjct: 376 ggaaatgaaaatgacacaat 395

>gb|AY501216.1| HIV-1 isolate LTNP1.2-9 from Spain envelope glycoprotein (env)
           gene, partial cds
          Length = 570

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  ggaaatgaaaatgacacaat 93
           ||||||||||||||||||||
Sbjct: 364 ggaaatgaaaatgacacaat 383

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aaggtttcctgcagcagcga 193
               ||||||||||||||||||||
Sbjct: 2472927 aaggtttcctgcagcagcga 2472908

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     gtttcctgcagcagcgaatc 196
               ||||||||||||||||||||
Sbjct: 3422119 gtttcctgcagcagcgaatc 3422138

>ref|XM_721511.1| Plasmodium yoelii yoelii str. 17XNL CCAAT-box DNA binding protein
           subunit B (PY06024) partial mRNA
          Length = 3192

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  tggaaatgaaaatgacacaa 92
           ||||||||||||||||||||
Sbjct: 768 tggaaatgaaaatgacacaa 787

>ref|XM_536374.2| PREDICTED: Canis familiaris similar to CG14043-PA (LOC479232), mRNA
          Length = 2669

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 373 gatcgccgccagcctcacgcccccctgagcga 404
           |||| |||||||||||||| ||||||| ||||
Sbjct: 546 gatcaccgccagcctcacggccccctgggcga 515

>emb|BX296557.35| Zebrafish DNA sequence from clone CH211-284O1 in linkage group 7,
             complete sequence
          Length = 173360

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   gttcccgctgaagatcctgt 368
             ||||||||||||||||||||
Sbjct: 13671 gttcccgctgaagatcctgt 13652

>emb|Z70272.1|HSJ30E17 Human DNA sequence from clone RP1-30E17 on chromosome X Contains a
             ribosomal protein L7a (RPL7A) pseudogene and part of a
             novel gene, complete sequence
          Length = 81984

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    tagattattttagcagaaat 30
             ||||||||||||||||||||
Sbjct: 65947 tagattattttagcagaaat 65928

>emb|AL772384.9| Human DNA sequence from clone RP11-451O13 on chromosome 1 Contains the
             5' end of a variant of the CD5L gene for CD5 antigen-like
             (scavenger receptor cysteine rich family), a pseudogene
             similar to part of a immunoglobulin receptor-like protein
             and the 5' end of a novel gene, complete sequence
          Length = 68148

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    agaaatgagaaggtcacaatcaca 48
             ||||||||||||| ||||||||||
Sbjct: 60061 agaaatgagaaggacacaatcaca 60038

>emb|AJ006287.1|HIV6287 Human immnunodeficiency virus type 1 complete proviral genome,
            isolate 89ES061
          Length = 9214

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ggaaatgaaaatgacacaat 93
            ||||||||||||||||||||
Sbjct: 7018 ggaaatgaaaatgacacaat 7037

>dbj|AB176541.1| Doliolum nationalis mitochondrial DNA, complete genome
          Length = 16351

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     cagctcaagtagattatttt 21
             ||||||||||||||||||||
Sbjct: 15234 cagctcaagtagattatttt 15253

>emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 in linkage group 14,
              complete sequence
          Length = 198761

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    gttcccgctgaagatcctgt 368
              ||||||||||||||||||||
Sbjct: 126958 gttcccgctgaagatcctgt 126977

>ref|NM_074429.2| Caenorhabditis elegans Serpentine Receptor, class H family member
           (srh-258) (srh-258) mRNA, complete cds
          Length = 1005

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 75  gaaatgaaaatgacacaattgtgt 98
           ||||||||||||| ||||||||||
Sbjct: 829 gaaatgaaaatgagacaattgtgt 806

>emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 in linkage group 18,
              complete sequence
          Length = 243552

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    gttcccgctgaagatcctgt 368
              ||||||||||||||||||||
Sbjct: 137491 gttcccgctgaagatcctgt 137472

>gb|AF256210.1|AF256210 HIV-1 clone S61K15 from Spain, partial genome
          Length = 9039

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ggaaatgaaaatgacacaat 93
            ||||||||||||||||||||
Sbjct: 7468 ggaaatgaaaatgacacaat 7487

>gb|AF256209.1|AF256209 HIV-1 clone S61K1 from Spain, partial genome
          Length = 9039

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ggaaatgaaaatgacacaat 93
            ||||||||||||||||||||
Sbjct: 7468 ggaaatgaaaatgacacaat 7487

>gb|AF256207.1|AF256207 HIV-1 clone S61G7 from Spain, complete genome
          Length = 9670

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ggaaatgaaaatgacacaat 93
            ||||||||||||||||||||
Sbjct: 7469 ggaaatgaaaatgacacaat 7488

>gb|AF256206.1|AF256206 HIV-1 clone S61G1 from Spain, complete genome
          Length = 9670

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ggaaatgaaaatgacacaat 93
            ||||||||||||||||||||
Sbjct: 7469 ggaaatgaaaatgacacaat 7488

>emb|Z81117.1|CET06E6 Caenorhabditis elegans Cosmid T06E6, complete sequence
          Length = 33238

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    gaaatgaaaatgacacaattgtgt 98
             ||||||||||||| ||||||||||
Sbjct: 16487 gaaatgaaaatgagacaattgtgt 16464

>gb|U00089.2| Mycoplasma pneumoniae M129, complete genome
          Length = 816394

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     gtgtcaatcaacaatacatc 114
              ||||||||||||||||||||
Sbjct: 423289 gtgtcaatcaacaatacatc 423308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,469,105
Number of Sequences: 3902068
Number of extensions: 3469105
Number of successful extensions: 62938
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62765
Number of HSP's gapped (non-prelim): 171
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)