ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 51 1e-06
2KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 51 1e-06
3KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 44 2e-04
4KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme ... 40 0.003
5SYN1_RAT (P09951) Synapsin-1 (Synapsin I) 30 3.5
6SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I) 29 4.5
7TFEB_HUMAN (P19484) Transcription factor EB 29 5.9
8CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (C... 29 5.9
9TIG_WOLPM (Q73I58) Trigger factor (TF) 29 5.9
10TFEB_MOUSE (Q9R210) Transcription factor EB 28 7.7
11YMH1_CAEEL (P34468) Hypothetical protein F58A4.1 28 7.7
12KPBB_HUMAN (Q93100) Phosphorylase b kinase beta regulatory chain... 28 7.7

>KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 511

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = -3

Query: 443 KSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 345
           KSA ++ LCK GDAVV LHRIG ASVIKIC V+
Sbjct: 479 KSATERALCKPGDAVVALHRIGAASVIKICIVK 511



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>KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 510

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = -3

Query: 443 KSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 345
           KSAV + LCK GDAVV LHRIG ASVIKIC V+
Sbjct: 478 KSAVTRGLCKPGDAVVALHRIGSASVIKICVVK 510



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>KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 508

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = -3

Query: 437 AVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 345
           A  K LCK GD+VV LHR+G ASVIKI TV+
Sbjct: 478 AKTKGLCKQGDSVVALHRVGTASVIKIVTVK 508



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>KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)|
           (PK)
          Length = 497

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = -3

Query: 431 KKQLCKAGDAVVVLHRIGVASVIKICTVQ 345
           KKQLCK GD+VV L R G A VIKI TV+
Sbjct: 469 KKQLCKTGDSVVALFRTGNAIVIKILTVK 497



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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 195 SPLPPNLPAQIGSMQQTATDGTISTCFHKTQVSPRQQGPG 314
           SPLP  LP+   + QQ+A+  T  T     Q  P   GPG
Sbjct: 500 SPLPQRLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPG 539



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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 195 SPLPPNLPAQIGSMQQTATDGTISTCFHKTQVSPRQQGPG 314
           SPLP  LP+   + QQ+A+  T  T     Q  P   GPG
Sbjct: 502 SPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPG 541



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>TFEB_HUMAN (P19484) Transcription factor EB|
          Length = 476

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 263 INLFPQDPGFATAARTGVLGSPCPADIT 346
           +N++  DP   TA+  GV  S CPAD+T
Sbjct: 191 LNVYSSDPQ-VTASLVGVTSSSCPADLT 217



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>CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5)|
           (CCR-5) (CCR5) (CD195 antigen)
          Length = 352

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 241 CCIDPI*AGKLGGRGLRYIELFYYRWYAPCSMVCGRCHACTIF 113
           CC++PI    +G +   Y+ +F+ +  A C      C  C+IF
Sbjct: 290 CCVNPIIYAFVGEKFRNYLLVFFQKHIAKCF-----CECCSIF 327



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>TIG_WOLPM (Q73I58) Trigger factor (TF)|
          Length = 444

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 18  ILLLPHVSTDITTKRVLQSSEYNKQQQQLIREKIVQ 125
           +++  +VS D+   RVL+  E NKQ Q+L+R + ++
Sbjct: 379 VIVNQYVSKDVQFDRVLKHFESNKQFQELVRGQALE 414



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>TFEB_MOUSE (Q9R210) Transcription factor EB|
          Length = 475

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 263 INLFPQDPGFATAARTGVLGSPCPADIT 346
           +N++  DP   TA+  GV  S CPAD+T
Sbjct: 190 LNVYSGDPQ-VTASMVGVTSSSCPADLT 216



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>YMH1_CAEEL (P34468) Hypothetical protein F58A4.1|
          Length = 254

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 192 RSPLPPNLPAQIGSMQQTATDGTISTCFHKTQVSPRQQGPG 314
           RSP PPN+P  +G   + AT    S       ++P   G G
Sbjct: 191 RSPTPPNIPLLVGGQSRLATVRPDSPYASDAALNPLNGGAG 231



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>KPBB_HUMAN (Q93100) Phosphorylase b kinase beta regulatory chain|
           (Phosphorylase kinase beta subunit)
          Length = 1092

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 128 MTPATHHTTGGIPTVIKELYI 190
           +TP  HHTT G P V K  Y+
Sbjct: 391 LTPVLHHTTEGYPVVPKYYYV 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,605,476
Number of Sequences: 219361
Number of extensions: 1209449
Number of successful extensions: 3228
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3228
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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