ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42d12 |
|---|---|
| Clone Library Name | barley_pub |
>WNT11_MOUSE (P48615) Protein Wnt-11 precursor| Length = 354 Score = 31.2 bits (69), Expect = 1.1 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -1 Query: 213 PREIKRVESPVFRVLLLHHCSQSERSLSSALETS*KLSSTCDLYCLSACCLVGRCW 46 P ++K+ S +++ LH+ ++L ++LET C + +S C + CW Sbjct: 175 PMKVKKTGSQANKLMRLHNSEVGRQALRASLETK------CKCHGVSGSCSIRTCW 224
>FANCG_MOUSE (Q9EQR6) Fanconi anemia group G protein homolog (Protein FACG)| Length = 623 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 26 IDSRPWTQHLPTKQQALKQYKSQVELSFQLVSKADDKDLSDCEQ*CNSN-TLNTGDSTRF 202 + + W+Q L +++AL ++ +EL F+ + + D + SDCEQ C S+ L Sbjct: 463 LQGQAWSQ-LKAQKEALSEFSQCLELLFRTLPE-DKEQGSDCEQKCRSDVALKQLRVAAL 520 Query: 203 ISRG 214 ISRG Sbjct: 521 ISRG 524
>ATPE_SHEON (Q8E8C1) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1| sector epsilon subunit) Length = 142 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%) Frame = -2 Query: 395 EVFYDPGELL----------AGLIKGPKEGDEEAALPGKLREAATVSASGAD 270 EVFY G LL A ++ K+ DE+AAL K R A ++ +GAD Sbjct: 62 EVFYLSGGLLEVQPSSVSVLADVVMRAKDIDEQAALEAKRRAEAHMATAGAD 113
>CK016_MOUSE (Q9JJR6) Protein C11orf16 homolog| Length = 402 Score = 29.3 bits (64), Expect = 4.3 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 15/72 (20%) Frame = -1 Query: 216 WPREIKRVESPVFR-----VLLLHHCSQ---------SERSLSSALETS*KLS-STCDLY 82 W + ++R+++P R L + HCSQ L S+ LS + C L Sbjct: 218 WKKAVERLQAPHTRDCHSSCLWVPHCSQLGPRAGCTTHRHPLDSSFLCPPCLSCACCQLQ 277 Query: 81 CLSACCLVGRCW 46 C S+C LVG W Sbjct: 278 CQSSCPLVGPSW 289
>PRPX_HORVU (P16273) Pathogen-related protein| Length = 235 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/40 (32%), Positives = 17/40 (42%) Frame = -2 Query: 434 VLKVDEQLRAEDVEVFYDPGELLAGLIKGPKEGDEEAALP 315 V VDE + E E FY+ G LA + P + P Sbjct: 190 VFHVDEDTKVEKAEFFYERGNFLASFLTAPAASASASGCP 229
>PROX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 736 Score = 29.3 bits (64), Expect = 4.3 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 36 DPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 140 D GPN+F P KHL T +LN A S +K+ Sbjct: 334 DQGPNSFHPEGKHLAETLKQELNTAMSQVVDTVVKV 369
>SYM_STRCO (Q9F2I9) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 538 Score = 28.9 bits (63), Expect = 5.7 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -2 Query: 404 EDVEVFYDPGELLAGLIKGPK-EGDEEAALPGKLREAATVSASGADAQPQACP 249 E V+ YD GE+ G +GP G EE LPG+L + G A + CP Sbjct: 116 EFVQDLYDKGEIYKGGYEGPYCVGCEEYKLPGEL-----LDGEGEYAGQKLCP 163
>PROX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 737 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +3 Query: 21 SRSTPDPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 140 S D GPN+ QP KHL T +LN A S +K+ Sbjct: 330 SNKERDHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKV 370
>HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal epoxide| hydrolase) (Epoxide hydratase) Length = 455 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 148 LRTVMQQQHPEHWRLDTFYFTRPLDHPCF 234 + T ++ H H R+D F FT PL+ CF Sbjct: 53 VETSDEEIHDLHQRIDKFRFTPPLEDSCF 81
>PROX1_HUMAN (Q92786) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 737 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 36 DPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 140 D GPN+ QP KHL T +LN A S +K+ Sbjct: 335 DHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKV 370
>JAG1_HUMAN (P78504) Jagged-1 precursor (Jagged1) (hJ1) (CD339 antigen)| Length = 1218 Score = 28.5 bits (62), Expect = 7.4 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Frame = +3 Query: 9 CSH*SRSTPDPGPNTFQPNNKHLNSTNH-KLN*AFSWSPKLTIKISLIANSDATATP*TL 185 CS S STP G NTF N N L +F+W T+ + +S+ T P Sbjct: 92 CSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWDSSNDTVQP--- 148 Query: 186 ETRHVLFHEATRSPLLSRTKEGAGLRLRVG 275 + +A+ S +++ +++ L+ G Sbjct: 149 ---DSIIEKASHSGMINPSRQWQTLKQNTG 175
>JAG1_MOUSE (Q9QXX0) Jagged-1 precursor (Jagged1) (CD339 antigen)| Length = 1218 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Frame = +3 Query: 9 CSH*SRSTPDPGPNTFQPNNKHLNSTNH-KLN*AFSWSPKLTIKISLIANSDATATP*TL 185 CS S STP G NTF N N L +F+W T+ + +S+ T P Sbjct: 92 CSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWDSSNDTIQP--- 148 Query: 186 ETRHVLFHEATRSPLLSRTKEGAGLRLRVG 275 + +A+ S +++ +++ L+ G Sbjct: 149 ---DSIIEKASHSGMINPSRQWQTLKQNTG 175
>JAG1_RAT (Q63722) Jagged-1 precursor (Jagged1) (CD339 antigen)| Length = 1219 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Frame = +3 Query: 9 CSH*SRSTPDPGPNTFQPNNKHLNSTNH-KLN*AFSWSPKLTIKISLIANSDATATP*TL 185 CS S STP G NTF N N L +F+W T+ + +S+ T P Sbjct: 92 CSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWDSSNDTIQP--- 148 Query: 186 ETRHVLFHEATRSPLLSRTKEGAGLRLRVG 275 + +A+ S +++ +++ L+ G Sbjct: 149 ---DSIIEKASHSGMINPSRQWQTLKQNTG 175
>CP4S3_DROME (Q9VXY0) Probable cytochrome P450 4s3 (EC 1.14.-.-) (CYPIVS3)| Length = 495 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%) Frame = -1 Query: 282 IRCRRAAAGLPLPWFG-------KAGVIEWPREIKRVESPVFRV 172 +R +R A LP P G K ++ W +E++ PVFR+ Sbjct: 26 LRLQRFAKTLPGPTIGELIANVKKGEILNWLKELREKHGPVFRI 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,919,036 Number of Sequences: 219361 Number of extensions: 990240 Number of successful extensions: 3683 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3589 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3674 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
