ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191889.1| Oryza sativa (japonica cultivar-group), predic... 101 2e-18
2dbj|AK109409.2| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
3dbj|AK106037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
4dbj|AK061471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
5ref|NM_191890.1| Oryza sativa (japonica cultivar-group), predic... 100 7e-18
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
7dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
9dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
10dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
11gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, co... 42 1.5
12ref|NM_192431.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
13ref|NM_193453.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
14gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.5
15gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.5
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
17ref|XM_976988.1| PREDICTED: Mus musculus hypothetical LOC631657 ... 42 1.5
18ref|XM_919420.2| PREDICTED: Mus musculus hypothetical LOC631657 ... 42 1.5
19gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome... 42 1.5
20gb|AC107707.10| Mus musculus chromosome 1, clone RP24-268C13, co... 42 1.5
21emb|X70708.1|TTLYSS T.thermophilus gene for lysyl-tRNA synthetase 42 1.5
22emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
28dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
29gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.5
30dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.5
31dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
32dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
33dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
34dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
35dbj|AP005765.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
36dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
37gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, co... 42 1.5
38gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
39emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722... 42 1.5
40gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.5
41gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 5.8
42ref|XM_361692.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.8
43ref|NM_024709.2| Homo sapiens chromosome 1 open reading frame 11... 40 5.8
44ref|XM_838093.1| Leishmania major strain Friedlin rRNA dimethylt... 40 5.8
45ref|XM_802327.1| Trypanosoma cruzi strain CL Brener potassium vo... 40 5.8
46ref|XM_810399.1| Trypanosoma cruzi strain CL Brener potassium vo... 40 5.8
47emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chr... 40 5.8
48gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.8
49emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA 40 5.8
50emb|CR858045.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2215 (from cl... 40 5.8
51gb|BC036067.1| Homo sapiens chromosome 1 open reading frame 115,... 40 5.8
52emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on ch... 40 5.8
53dbj|AK125403.1| Homo sapiens cDNA FLJ43414 fis, clone OCBBF2024781 40 5.8
54dbj|AK091937.1| Homo sapiens cDNA FLJ34618 fis, clone KIDNE2014415 40 5.8
55dbj|AK056749.1| Homo sapiens cDNA FLJ32187 fis, clone PLACE6002016 40 5.8
56dbj|AK024208.1| Homo sapiens cDNA FLJ14146 fis, clone MAMMA1002947 40 5.8
57dbj|AB169850.1| Macaca fascicularis brain cDNA, clone: QtrA-1319... 40 5.8
58tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 5.8
59dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
60ref|XM_311349.2| Anopheles gambiae str. PEST ENSANGP00000001678 ... 40 5.8
61emb|AJ336503.1|HSA336503 Homo sapiens genomic sequence surroundi... 40 5.8
62emb|AJ336100.1|HSA336100 Homo sapiens genomic sequence surroundi... 40 5.8
63emb|AJ329421.1|HSA329421 Homo sapiens genomic sequence surroundi... 40 5.8
64emb|AJ331233.1|HSA331233 Homo sapiens genomic sequence surroundi... 40 5.8
65gb|AY108934.1| Zea mays PCO145446 mRNA sequence 40 5.8
66emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26... 40 5.8
67gb|DQ267826.1| Nocardia sp. C-14-1 catechol, 2-dioxygenase and p... 40 5.8
68emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on ch... 40 5.8
69emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones... 40 5.8 
>ref|NM_191889.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 801

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                       
Query: 349 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 408
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 656 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 597

                                  
Query: 409 cgcagctgctcgtccaccttgag 431
           ||||||||||| |||||||||||
Sbjct: 596 cgcagctgctcatccaccttgag 574



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 247 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 306
           |||||||||||||||| ||||| | | || ||||| ||||||||  |||||||||||| |
Sbjct: 773 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 714

              
Query: 307 agc 309
           |||
Sbjct: 713 agc 711
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>dbj|AK109409.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D12, full
           insert sequence
          Length = 1128

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                       
Query: 349 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 408
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 722 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 663

                                  
Query: 409 cgcagctgctcgtccaccttgag 431
           ||||||||||| |||||||||||
Sbjct: 662 cgcagctgctcatccaccttgag 640



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 247 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 306
           |||||||||||||||| ||||| | | || ||||| ||||||||  |||||||||||| |
Sbjct: 839 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 780

              
Query: 307 agc 309
           |||
Sbjct: 779 agc 777
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>dbj|AK106037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D09, full
           insert sequence
          Length = 1086

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                       
Query: 349 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 408
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 717 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 658

                                  
Query: 409 cgcagctgctcgtccaccttgag 431
           ||||||||||| |||||||||||
Sbjct: 657 cgcagctgctcatccaccttgag 635



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 247 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 306
           |||||||||||||||| ||||| | | || ||||| ||||||||  |||||||||||| |
Sbjct: 834 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 775

              
Query: 307 agc 309
           |||
Sbjct: 774 agc 772
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>dbj|AK061471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E01, full
           insert sequence
          Length = 1086

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                       
Query: 349 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 408
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 717 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 658

                                  
Query: 409 cgcagctgctcgtccaccttgag 431
           ||||||||||| |||||||||||
Sbjct: 657 cgcagctgctcatccaccttgag 635



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 247 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 306
           |||||||||||||||| ||||| | | || ||||| ||||||||  |||||||||||| |
Sbjct: 834 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 775

              
Query: 307 agc 309
           |||
Sbjct: 774 agc 772
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>ref|NM_191890.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 59/62 (95%)
 Strand = Plus / Minus

                                                                       
Query: 370 agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccaccttg 429
           ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 629 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccaccttg 570

             
Query: 430 ag 431
           ||
Sbjct: 569 ag 568
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                            
Query: 349      cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 408
                ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 30505945 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 30506004

                                   
Query: 409      cgcagctgctcgtccacct 427
                ||||||||||| |||||||
Sbjct: 30506005 cgcagctgctcatccacct 30506023



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                          
Query: 370      agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccacct 427
                ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 30514024 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccacct 30514081



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                            
Query: 247      aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 306
                |||||||||||||||| ||||| | | || ||||| ||||||||  |||||||||||| |
Sbjct: 30505828 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 30505887

                   
Query: 307      agc 309
                |||
Sbjct: 30505888 agc 30505890



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 315      ggggagcgccgcctcctcgtc 335
                |||||||||||||||||||||
Sbjct: 26660505 ggggagcgccgcctcctcgtc 26660525



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 315      ggggagcgccgcctcctcgtc 335
                |||||||||||||||||||||
Sbjct: 20960902 ggggagcgccgcctcctcgtc 20960922



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 315     ggggagcgccgcctcctcgt 334
               ||||||||||||||||||||
Sbjct: 4856279 ggggagcgccgcctcctcgt 4856298
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>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435H01
          Length = 160141

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                          
Query: 349    cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 408
              ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 134208 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 134267

                                 
Query: 409    cgcagctgctcgtccacct 427
              ||||||||||| |||||||
Sbjct: 134268 cgcagctgctcatccacct 134286



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                        
Query: 370    agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccacct 427
              ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 142287 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccacct 142344



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                          
Query: 247    aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 306
              |||||||||||||||| ||||| | | || ||||| ||||||||  |||||||||||| |
Sbjct: 134091 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 134150

                 
Query: 307    agc 309
              |||
Sbjct: 134151 agc 134153
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 321      cgccgcctcctcgtccccctcct 343
                |||||||||||||||||||||||
Sbjct: 18372886 cgccgcctcctcgtccccctcct 18372864



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 315     ggggagcgccgcctcctcgtc 335
               |||||||||||||||||||||
Sbjct: 8758489 ggggagcgccgcctcctcgtc 8758509
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 321   cgccgcctcctcgtccccctcct 343
             |||||||||||||||||||||||
Sbjct: 87622 cgccgcctcctcgtccccctcct 87600
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 321   cgccgcctcctcgtccccctcct 343
             |||||||||||||||||||||||
Sbjct: 34760 cgccgcctcctcgtccccctcct 34738
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>gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, complete sequence
          Length = 181572

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 399   gtcctccgcccgcagctgctc 419
             |||||||||||||||||||||
Sbjct: 18113 gtcctccgcccgcagctgctc 18133
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>ref|NM_192431.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 315 ggggagcgccgcctcctcgtc 335
           |||||||||||||||||||||
Sbjct: 193 ggggagcgccgcctcctcgtc 213
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>ref|NM_193453.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 315 ggggagcgccgcctcctcgtc 335
           |||||||||||||||||||||
Sbjct: 193 ggggagcgccgcctcctcgtc 213
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 255     ggcctgcggctgcgcgtcggc 275
               |||||||||||||||||||||
Sbjct: 2919771 ggcctgcggctgcgcgtcggc 2919791
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 255     ggcctgcggctgcgcgtcggc 275
               |||||||||||||||||||||
Sbjct: 3961642 ggcctgcggctgcgcgtcggc 3961662
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 315      ggggagcgccgcctcctcgtc 335
                |||||||||||||||||||||
Sbjct: 13704270 ggggagcgccgcctcctcgtc 13704290
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>ref|XM_976988.1| PREDICTED: Mus musculus hypothetical LOC631657 (LOC631657), mRNA
          Length = 1068

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 399 gtcctccgcccgcagctgctc 419
           |||||||||||||||||||||
Sbjct: 685 gtcctccgcccgcagctgctc 665
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>ref|XM_919420.2| PREDICTED: Mus musculus hypothetical LOC631657 (LOC631657), mRNA
          Length = 1068

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 399 gtcctccgcccgcagctgctc 419
           |||||||||||||||||||||
Sbjct: 685 gtcctccgcccgcagctgctc 665
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>gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome 7, complete sequence
          Length = 211478

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    agctttcagctggtctccaaa 124
              |||||||||||||||||||||
Sbjct: 144356 agctttcagctggtctccaaa 144336
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>gb|AC107707.10| Mus musculus chromosome 1, clone RP24-268C13, complete sequence
          Length = 178000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 399    gtcctccgcccgcagctgctc 419
              |||||||||||||||||||||
Sbjct: 148558 gtcctccgcccgcagctgctc 148578
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>emb|X70708.1|TTLYSS T.thermophilus gene for lysyl-tRNA synthetase
          Length = 1738

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 325  gcctcctcgtccccctccttg 345
            |||||||||||||||||||||
Sbjct: 1424 gcctcctcgtccccctccttg 1404
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 255     ggcctgcggctgcgcgtcggc 275
               |||||||||||||||||||||
Sbjct: 3703544 ggcctgcggctgcgcgtcggc 3703564
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 315     ggggagcgccgcctcctcgtc 335
               |||||||||||||||||||||
Sbjct: 2774519 ggggagcgccgcctcctcgtc 2774539
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 315     ggggagcgccgcctcctcgtc 335
               |||||||||||||||||||||
Sbjct: 6670151 ggggagcgccgcctcctcgtc 6670131
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 315     ggggagcgccgcctcctcgtc 335
               |||||||||||||||||||||
Sbjct: 8683500 ggggagcgccgcctcctcgtc 8683520
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 315      ggggagcgccgcctcctcgtc 335
                |||||||||||||||||||||
Sbjct: 21515364 ggggagcgccgcctcctcgtc 21515384
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 315      ggggagcgccgcctcctcgtc 335
                |||||||||||||||||||||
Sbjct: 13699245 ggggagcgccgcctcctcgtc 13699265
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>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1014_G12
          Length = 158830

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   ggggagcgccgcctcctcgtc 335
             |||||||||||||||||||||
Sbjct: 24104 ggggagcgccgcctcctcgtc 24124
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>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   ggggagcgccgcctcctcgtc 335
             |||||||||||||||||||||
Sbjct: 94942 ggggagcgccgcctcctcgtc 94962
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 325    gcctcctcgtccccctccttg 345
              |||||||||||||||||||||
Sbjct: 988093 gcctcctcgtccccctccttg 988113



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    ccgcctcctcgtccccctcct 343
              |||||||||||||||||||||
Sbjct: 630372 ccgcctcctcgtccccctcct 630352
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>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0049H05
          Length = 161934

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 315    ggggagcgccgcctcctcgtc 335
              |||||||||||||||||||||
Sbjct: 134219 ggggagcgccgcctcctcgtc 134239
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>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0694A04
          Length = 141476

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 315  ggggagcgccgcctcctcgtc 335
            |||||||||||||||||||||
Sbjct: 7597 ggggagcgccgcctcctcgtc 7617
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>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0567G03
          Length = 196834

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   ggggagcgccgcctcctcgtc 335
             |||||||||||||||||||||
Sbjct: 72548 ggggagcgccgcctcctcgtc 72568
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>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0057D11
          Length = 190790

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 315    ggggagcgccgcctcctcgtc 335
              |||||||||||||||||||||
Sbjct: 188285 ggggagcgccgcctcctcgtc 188305
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>dbj|AP005765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0023G13
          Length = 144694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   ggggagcgccgcctcctcgtc 335
             |||||||||||||||||||||
Sbjct: 26860 ggggagcgccgcctcctcgtc 26880
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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0070J06
          Length = 142303

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   ggggagcgccgcctcctcgtc 335
             |||||||||||||||||||||
Sbjct: 26479 ggggagcgccgcctcctcgtc 26499
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>gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, complete sequence
          Length = 209834

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 399   gtcctccgcccgcagctgctc 419
             |||||||||||||||||||||
Sbjct: 57923 gtcctccgcccgcagctgctc 57943
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 315     ggggagcgccgcctcctcgtc 335
               |||||||||||||||||||||
Sbjct: 6670026 ggggagcgccgcctcctcgtc 6670006
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>emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722_D03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 315   ggggagcgccgcctcctcgtc 335
             |||||||||||||||||||||
Sbjct: 88156 ggggagcgccgcctcctcgtc 88136
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 325    gcctcctcgtccccctccttg 345
              |||||||||||||||||||||
Sbjct: 663093 gcctcctcgtccccctccttg 663113



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    ccgcctcctcgtccccctcct 343
              |||||||||||||||||||||
Sbjct: 292533 ccgcctcctcgtccccctcct 292513
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    gctcgtccaccttgagcacg 435
              ||||||||||||||||||||
Sbjct: 358013 gctcgtccaccttgagcacg 357994
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>ref|XM_361692.1| Magnaporthe grisea 70-15 hypothetical protein (MG04166.4) partial
            mRNA
          Length = 1341

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 408  ccgcagctgctcgtccaccttgag 431
            |||||||||||||| |||||||||
Sbjct: 1104 ccgcagctgctcgtacaccttgag 1081
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>ref|NM_024709.2| Homo sapiens chromosome 1 open reading frame 115 (C1orf115), mRNA
          Length = 3007

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 181 gccgcctcctcgtccccctc 162
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>ref|XM_838093.1| Leishmania major strain Friedlin rRNA dimethyltransferase
           (LMJ_1009) partial mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 416 gctcgtccaccttgagcacg 435
           ||||||||||||||||||||
Sbjct: 415 gctcgtccaccttgagcacg 396
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>ref|XM_802327.1| Trypanosoma cruzi strain CL Brener potassium voltage-gated channel
           (Tc00.1047053507213.30) partial mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 ctccgcccgcagctgctcgt 421
           ||||||||||||||||||||
Sbjct: 234 ctccgcccgcagctgctcgt 215
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>ref|XM_810399.1| Trypanosoma cruzi strain CL Brener potassium voltage-gated channel
           (Tc00.1047053511301.140) partial mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 ctccgcccgcagctgctcgt 421
           ||||||||||||||||||||
Sbjct: 234 ctccgcccgcagctgctcgt 215
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>emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chromosome 1 Contains the
             3' end of a histone deacetylase 1 (HDAC1) pseudogene, the
             3' end of the MARK1 gene for MAP/microtubule
             affinity-regulating kinase, a novel gene, a novel gene
             (FLJ14146) and a CpG island, complete sequence
          Length = 121601

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   gccgcctcctcgtccccctc 341
             ||||||||||||||||||||
Sbjct: 66445 gccgcctcctcgtccccctc 66426
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      agttgaactgagctttcagc 113
               ||||||||||||||||||||
Sbjct: 1652648 agttgaactgagctttcagc 1652629
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>emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA
          Length = 4093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 408 ccgcagctgctcgtccacct 427
           ||||||||||||||||||||
Sbjct: 811 ccgcagctgctcgtccacct 792
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>emb|CR858045.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2215 (from clone
          DKFZp469E2215)
          Length = 4716

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 28 cgactcccgaccctggaccc 47
          ||||||||||||||||||||
Sbjct: 30 cgactcccgaccctggaccc 11
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>gb|BC036067.1| Homo sapiens chromosome 1 open reading frame 115, mRNA (cDNA clone
           MGC:33695 IMAGE:5274863), complete cds
          Length = 3007

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 181 gccgcctcctcgtccccctc 162
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>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the
              3' end of a variant of the gene for a novel protein similar
              to human sperm antigen HCMOGT-1 (B230396K10Rik), the
              Adora2b gene for adenosine A2b receptor, the gene for a
              novel protein (2410012H22Rik), a somatic cytochrome c
              (Cycs) pseudogene, a novel gene, a novel pseudogene, the
              gene for a novel protein (2810460C24Rik), the 3' end of the
              Ncor1 gene for nuclear receptor co-repressor 1 and two CpG
              islands, complete sequence
          Length = 214834

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    aacactggagactcgacacg 198
              ||||||||||||||||||||
Sbjct: 123557 aacactggagactcgacacg 123576
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>dbj|AK125403.1| Homo sapiens cDNA FLJ43414 fis, clone OCBBF2024781
          Length = 3410

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 656 gccgcctcctcgtccccctc 637
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>dbj|AK091937.1| Homo sapiens cDNA FLJ34618 fis, clone KIDNE2014415
          Length = 2900

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 149 gccgcctcctcgtccccctc 130
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>dbj|AK056749.1| Homo sapiens cDNA FLJ32187 fis, clone PLACE6002016
          Length = 2832

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 135 gccgcctcctcgtccccctc 116
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>dbj|AK024208.1| Homo sapiens cDNA FLJ14146 fis, clone MAMMA1002947
          Length = 2887

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 136 gccgcctcctcgtccccctc 117
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>dbj|AB169850.1| Macaca fascicularis brain cDNA, clone: QtrA-13193, similar to human
            fatty acid 2-hydroxylase (FA2H), mRNA, RefSeq:
            NM_024306.2
          Length = 2453

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   taaacagtacaaatcacaag 95
            ||||||||||||||||||||
Sbjct: 2329 taaacagtacaaatcacaag 2310
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   ccgcagctgctcgtccacct 427
             ||||||||||||||||||||
Sbjct: 58678 ccgcagctgctcgtccacct 58697
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    ggggagcgccgcctcctcgt 334
              ||||||||||||||||||||
Sbjct: 100928 ggggagcgccgcctcctcgt 100947
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>ref|XM_311349.2| Anopheles gambiae str. PEST ENSANGP00000001678 (ENSANGG00000001397),
            partial mRNA
          Length = 7146

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  cctccgcccgcagctgctcg 420
            ||||||||||||||||||||
Sbjct: 2899 cctccgcccgcagctgctcg 2880
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>emb|AJ336503.1|HSA336503 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-MA13R
          Length = 934

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>emb|AJ336100.1|HSA336100 Homo sapiens genomic sequence surrounding NotI site, clone
           NR3-BD17RS
          Length = 679

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>emb|AJ329421.1|HSA329421 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-DJ18R
          Length = 703

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>emb|AJ331233.1|HSA331233 Homo sapiens genomic sequence surrounding NotI site, clone
           NL3-CK20R
          Length = 776

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgcctcctcgtccccctc 341
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>gb|AY108934.1| Zea mays PCO145446 mRNA sequence
          Length = 867

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 320 gcgccgcctcctcgtccccctcct 343
           |||||||||||||||| |||||||
Sbjct: 106 gcgccgcctcctcgtcgccctcct 129
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>emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26, UL26.5, and UL44-gC genes
          Length = 4523

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 408  ccgcagctgctcgtccacct 427
            ||||||||||||||||||||
Sbjct: 3275 ccgcagctgctcgtccacct 3294
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>gb|DQ267826.1| Nocardia sp. C-14-1 catechol, 2-dioxygenase and phenol hydroxylase
            gene clusters, partial sequence
          Length = 5299

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 403  tccgcccgcagctgctcgtccacc 426
            |||||||||||||||||| |||||
Sbjct: 3694 tccgcccgcagctgctcgaccacc 3717
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>emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on chromosome 15, complete
              sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     aaccaaacaacaagcactta 77
              ||||||||||||||||||||
Sbjct: 161085 aaccaaacaacaagcactta 161104
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>emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones L9127,L3286,L3175,L8286,L7480,
             incomplete shotgun, assembled reads, with VERY preliminary
             annotation, complete sequence
          Length = 139597

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   gctcgtccaccttgagcacg 435
             ||||||||||||||||||||
Sbjct: 35803 gctcgtccaccttgagcacg 35822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,046,284
Number of Sequences: 3902068
Number of extensions: 3046284
Number of successful extensions: 65604
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64637
Number of HSP's gapped (non-prelim): 967
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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