>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 357 QPAGDARAATTSGAAPGLVSPARRREPQLV--QRHVIFSPTRTAYGTARLRLATGGR 193
           +PA  +  A+TS +AP   +PAR+  P     Q     +PT    G AR  + T GR
Sbjct: 66  RPAAPSAPASTSSSAPTPAAPARQASPASAHQQAPTPGAPTPRPQGGARPGMPTPGR 122

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +2

Query: 146  TTREVSIYYEAVFLATLPPVASRSRAVPYAVRVGEKIT*RCTSWGSRRRAGDTSPGAAPE 325
            TT+ V   Y    LA   PV   + AVP  +   E     C++  +   AG+T+   + +
Sbjct: 1163 TTKSVPTTYVTT-LAPSAPVTPATNAVPTTITTTE-----CSA--ATNAAGETTSVCSAK 1214

Query: 326  VVAARASPAGCSSPGSTTP 382
             + + AS    ++P +TTP
Sbjct: 1215 TIVSSASAGENTAPSATTP 1233

>BRO1_DEBHA (Q6BRL3) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 970

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 455 RHPPTAPQQQWSPSYLYMPYPHASPESYYQDY 360
           R PP  P ++  PSY   P PHA P++ Y  +
Sbjct: 891 RPPPALPPKR--PSYSAQPTPHAPPQAPYTQF 920

>ELF3_ARATH (O82804) EARLY FLOWERING 3 protein (Nematode-responsive protein)|
          Length = 695

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -3

Query: 458 PRHPPTAPQQQW-----SPS--YLYMPYPHASPESYYQDYY 357
           P+ PP+   QQW     SPS   +Y P+P  +   +Y  YY
Sbjct: 460 PQPPPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGHYGGYY 500

>EFP_NOCFA (Q5YTL1) Elongation factor P (EF-P)|
          Length = 187

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 333 ATTSGAAPGLVSPARRREPQLVQRHVIFSPTRTAYGTARLRLATGGRVAKKT--AS*YIE 160
           A TS    GLV     +  Q+V+   +      A+   +L+    G++  KT  A   +E
Sbjct: 2   ADTSDFKNGLVLKIDGQLQQIVEFQHVKPGKGPAFVRTKLKNVVSGKIVDKTFNAGVKVE 61

Query: 159 TSLVVARVACYLFHD 115
           T+ V  R   YL+HD
Sbjct: 62  TATVDRRDMTYLYHD 76

>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
           (ZAP113)
          Length = 1951

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -3

Query: 458 PRHPPTAPQQQWSPSYLYMPYPHASPESYY 369
           P  PP  P     PS  YMP P   P SYY
Sbjct: 147 PESPPVPPGSYMPPSQSYMP-PPQPPPSYY 175

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -3

Query: 458 PRHPPTAPQQQWSPSYLYMPYPHASPESYY 369
           P  PP  P     PS  YMP P   P SYY
Sbjct: 148 PESPPVPPGSYMPPSQSYMP-PPQPPPSYY 176

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 378  VVLPGLLQPAGDARAATTSGAAPGLVSPARRREPQLVQRHVIFSPTRT 235
            +V PG   P+  A++  T  A  G VSPA+     L  +H+  +P  T
Sbjct: 1790 LVAPGSDTPSSGAQSPLTPQAGNGNVSPAQTFHKDLFSKHLPGTPAST 1837

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 278 GSRRRAGDTSPGAAPEVVAARASPAGCSSPGST 376
           G+ + A D +  AAP+V AA  +PAG S   ST
Sbjct: 181 GALKGAVDAASDAAPDVAAASPAPAGISDQLST 213

>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II) (Box-dependent myc-interacting protein 1)
          Length = 593

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 299 DTSPGAAPEV-VAARASPAGCSSPGSTTP 382
           D SP A PE+ V     PAG ++PG+T P
Sbjct: 301 DGSPAATPEIRVNHEPEPAGGATPGATLP 329

>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)|
          Length = 1655

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 281 SRRRAGDTSPGAAPEVVAARASPAGCSSPGSTTP 382
           SR      SPG+ P+   + A P   + PGS  P
Sbjct: 371 SRIEENGPSPGSTPDAPGSAAPPGSAAPPGSAAP 404

>DPOL_ADE04 (P87503) DNA polymerase (EC 2.7.7.7)|
          Length = 1193

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 281 SRRRAGDTSPGAAPEVVAA--RASPAGCSSPGSTTP 382
           SRRR+  +SPGA PE   A  R +PA  +S     P
Sbjct: 24  SRRRSRQSSPGAVPEPARARRRRAPATTASGSRAAP 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,109,725
Number of Sequences: 219361
Number of extensions: 852434
Number of successful extensions: 3237
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3234
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)