ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42d08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479156.1| Oryza sativa (japonica cultivar-group), mRNA Length = 735 Score = 135 bits (68), Expect = 1e-28 Identities = 125/144 (86%) Strand = Plus / Minus Query: 185 cggcggctaaaaggagcggagccagtccgagtccggcaggttgagcggcggcagcgagtg 244 |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 714 cggcggctggaaggagcggagccagtcggagtccggcagggtgagcggcggcagcgagtg 655 Query: 245 gcggccgcgcgtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggt 304 ||| ||| | |||||||||| || |||||||||| ||||| || ||||||| |||||| Sbjct: 654 gcgcccgtgggtggagctgccgcgccgcacgtcctccatggtgagcagcgccgccacggt 595 Query: 305 gttgcggaagatcctctgctccgc 328 ||| ||||| |||| |||||||| Sbjct: 594 gttccggaatatcccgtgctccgc 571 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 400 ccatcatggcctcgcactccctcaccatc 428 ||||||| ||||||||||||| ||||||| Sbjct: 517 ccatcatcgcctcgcactcccgcaccatc 489
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 135 bits (68), Expect = 1e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 185 cggcggctaaaaggagcggagccagtccgagtccggcaggttgagcggcggcagcgagtg 244 |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 25273442 cggcggctggaaggagcggagccagtcggagtccggcagggtgagcggcggcagcgagtg 25273501 Query: 245 gcggccgcgcgtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggt 304 ||| ||| | |||||||||| || |||||||||| ||||| || ||||||| |||||| Sbjct: 25273502 gcgcccgtgggtggagctgccgcgccgcacgtcctccatggtgagcagcgccgccacggt 25273561 Query: 305 gttgcggaagatcctctgctccgc 328 ||| ||||| |||| |||||||| Sbjct: 25273562 gttccggaatatcccgtgctccgc 25273585 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 400 ccatcatggcctcgcactccctcaccatc 428 ||||||| ||||||||||||| ||||||| Sbjct: 25273639 ccatcatcgcctcgcactcccgcaccatc 25273667
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 135 bits (68), Expect = 1e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 185 cggcggctaaaaggagcggagccagtccgagtccggcaggttgagcggcggcagcgagtg 244 |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 90113 cggcggctggaaggagcggagccagtcggagtccggcagggtgagcggcggcagcgagtg 90172 Query: 245 gcggccgcgcgtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggt 304 ||| ||| | |||||||||| || |||||||||| ||||| || ||||||| |||||| Sbjct: 90173 gcgcccgtgggtggagctgccgcgccgcacgtcctccatggtgagcagcgccgccacggt 90232 Query: 305 gttgcggaagatcctctgctccgc 328 ||| ||||| |||| |||||||| Sbjct: 90233 gttccggaatatcccgtgctccgc 90256 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 400 ccatcatggcctcgcactccctcaccatc 428 ||||||| ||||||||||||| ||||||| Sbjct: 90310 ccatcatcgcctcgcactcccgcaccatc 90338
>gb|BT017616.1| Zea mays clone EL01N0434B02.c mRNA sequence Length = 996 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 255 gtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggtgttgcggaag 314 |||||||| | ||||||||| |||||||||| || ||||| | ||||||||||||||| Sbjct: 646 gtggagctcccgctgcgcacctcctgcatggtgagcagcgcggcgacggtgttgcggaag 587 Query: 315 at 316 || Sbjct: 586 at 585
>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12, complete sequence Length = 135323 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 348 tcccgccgcgccgccgcctgccc 370 ||||||||||||||||||||||| Sbjct: 2741 tcccgccgcgccgccgcctgccc 2763
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Minus Query: 349 cccgccgcgccgccgcctgcccc 371 ||||||||||||||||||||||| Sbjct: 952836 cccgccgcgccgccgcctgcccc 952814
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 348 tcccgccgcgccgccgcctgccc 370 ||||||||||||||||||||||| Sbjct: 11433247 tcccgccgcgccgccgcctgccc 11433269 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcggcggcagcgagtggcggc 249 ||||||||||||||||||||| Sbjct: 24164911 gcggcggcagcgagtggcggc 24164931
>ref|NM_209589.1| Eremothecium gossypii ADR140Cp (ADR140C), mRNA Length = 2130 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 349 cccgccgcgccgccgcctgcccc 371 ||||||||||||||||||||||| Sbjct: 1586 cccgccgcgccgccgcctgcccc 1608
>ref|XM_470931.1| Oryza sativa (japonica cultivar-group), mRNA Length = 744 Score = 44.1 bits (22), Expect = 0.37 Identities = 52/62 (83%) Strand = Plus / Minus Query: 255 gtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggtgttgcggaag 314 |||||||||| |||||| || |||||||||| || || || | ||||||||||||||| Sbjct: 626 gtggagctgccgctgcggacctcctgcatggtgagcagggcggcgacggtgttgcggaag 567 Query: 315 at 316 || Sbjct: 566 at 565
>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete sequence Length = 145714 Score = 44.1 bits (22), Expect = 0.37 Identities = 52/62 (83%) Strand = Plus / Plus Query: 255 gtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggtgttgcggaag 314 |||||||||| |||||| || |||||||||| || || || | ||||||||||||||| Sbjct: 124114 gtggagctgccgctgcggacctcctgcatggtgagcagggcggcgacggtgttgcggaag 124173 Query: 315 at 316 || Sbjct: 124174 at 124175
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.37 Identities = 52/62 (83%) Strand = Plus / Minus Query: 255 gtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggtgttgcggaag 314 |||||||||| |||||| || |||||||||| || || || | ||||||||||||||| Sbjct: 16460219 gtggagctgccgctgcggacctcctgcatggtgagcagggcggcgacggtgttgcggaag 16460160 Query: 315 at 316 || Sbjct: 16460159 at 16460158 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 gcctcgcggtcccgccgcgccgcc 362 ||||||| |||||||||||||||| Sbjct: 17918332 gcctcgccgtcccgccgcgccgcc 17918309 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcccctc 373 ||||||||||| |||||||||||| Sbjct: 2869424 ccgccgcgccgacgcctgcccctc 2869401
>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete sequence Length = 146775 Score = 44.1 bits (22), Expect = 0.37 Identities = 52/62 (83%) Strand = Plus / Plus Query: 255 gtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggtgttgcggaag 314 |||||||||| |||||| || |||||||||| || || || | ||||||||||||||| Sbjct: 6991 gtggagctgccgctgcggacctcctgcatggtgagcagggcggcgacggtgttgcggaag 7050 Query: 315 at 316 || Sbjct: 7051 at 7052
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.37 Identities = 52/62 (83%) Strand = Plus / Minus Query: 255 gtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggtgttgcggaag 314 |||||||||| |||||| || |||||||||| || || || | ||||||||||||||| Sbjct: 16453852 gtggagctgccgctgcggacctcctgcatggtgagcagggcggcgacggtgttgcggaag 16453793 Query: 315 at 316 || Sbjct: 16453792 at 16453791 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 gcctcgcggtcccgccgcgccgcc 362 ||||||| |||||||||||||||| Sbjct: 17911873 gcctcgccgtcccgccgcgccgcc 17911850 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcccctc 373 ||||||||||| |||||||||||| Sbjct: 2869535 ccgccgcgccgacgcctgcccctc 2869512
>dbj|AK063600.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B10, full insert sequence Length = 537 Score = 44.1 bits (22), Expect = 0.37 Identities = 52/62 (83%) Strand = Plus / Minus Query: 255 gtggagctgctgctgcgcacgtcctgcatggccaggagcgccgacacggtgttgcggaag 314 |||||||||| |||||| || |||||||||| || || || | ||||||||||||||| Sbjct: 132 gtggagctgccgctgcggacctcctgcatggtgagcagggcggcgacggtgttgcggaag 73 Query: 315 at 316 || Sbjct: 72 at 71
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcggcggcagcgagtggcggc 249 ||||||||||||||||||||| Sbjct: 51149 gcggcggcagcgagtggcggc 51169
>ref|XM_367497.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07408.4) partial mRNA Length = 6378 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 gcctccatcatggcctcgcactccc 420 ||||||||| ||||||||||||||| Sbjct: 4669 gcctccatcgtggcctcgcactccc 4693
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 cgccgcgccgccgcctgcccc 371 ||||||||||||||||||||| Sbjct: 2186566 cgccgcgccgccgcctgcccc 2186586
>gb|AC023855.15| Homo sapiens chromosome 17, clone RP11-546M21, complete sequence Length = 146219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 tgggggacgacggcggcggct 192 ||||||||||||||||||||| Sbjct: 69103 tgggggacgacggcggcggct 69123
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 350 ccgccgcgccgccgcctgcccctcg 374 ||||||||||||||||||| ||||| Sbjct: 3234835 ccgccgcgccgccgcctgcgcctcg 3234859
>gb|AC004150.8|AC004150 Homo sapiens chromosome 17, clone hRPC.971_F_3, complete sequence Length = 120766 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 tgggggacgacggcggcggct 192 ||||||||||||||||||||| Sbjct: 53883 tgggggacgacggcggcggct 53903
>ref|XM_521845.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 4632411J06 (LOC466446), mRNA Length = 1785 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gcgccgccgcctgcccctcgccgg 378 |||||||||||||| ||||||||| Sbjct: 1216 gcgccgccgcctgcgcctcgccgg 1193
>ref|XM_468364.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1708 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 149 ccgccgcgccgccgcctgcc 130
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 ccgccgcgccgccgcctgcccctc 373 ||||||||||||||||||| |||| Sbjct: 2955583 ccgccgcgccgccgcctgcgcctc 2955606
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggatgtggctggtgaggcca 130 |||||||||||||||||||| Sbjct: 1664025 ggatgtggctggtgaggcca 1664006
>gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032M21 map C83B, complete sequence Length = 48636 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cgcgccgccgcctgcccctcgccg 377 |||||||||||| ||||||||||| Sbjct: 24761 cgcgccgccgcccgcccctcgccg 24784
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cgcgccgccgcctgcccctcgccg 377 |||||||||||| ||||||||||| Sbjct: 142418 cgcgccgccgcccgcccctcgccg 142441
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gagccagtccgagtccggca 222 |||||||||||||||||||| Sbjct: 1039013 gagccagtccgagtccggca 1038994
>gb|AC117937.4| Canis familiaris clone RP81-182F3, complete sequence Length = 152861 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggatgtggctggtgaggcca 130 |||||||||||||||||||| Sbjct: 32337 ggatgtggctggtgaggcca 32318
>gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genomic sequence, complete sequence Length = 142896 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 gcctcgcggtcccgccgcgccgcc 362 ||||||| |||||||||||||||| Sbjct: 103960 gcctcgccgtcccgccgcgccgcc 103983
>ref|XM_540495.2| PREDICTED: Canis familiaris similar to Beta-1,3-N-acetylglucosaminyltransferase radical fringe (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) (LOC483376), mRNA Length = 1629 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 ggccgcgcgtggagctgctgctgcgcac 274 |||||||| ||| ||||||||||||||| Sbjct: 98 ggccgcgcctggggctgctgctgcgcac 125
>gb|AC084859.7| Homo sapiens chromosome 11, clone CTC-497E21, complete sequence Length = 172345 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gcgccgccgcctgcccctcgccgg 378 |||||||||||||| ||||||||| Sbjct: 90929 gcgccgccgcctgcgcctcgccgg 90906
>emb|X99618.2|MTSERTHPK Mycobacterium tuberculosis gene for serine/threonine protein kinase Length = 2118 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gagccagtccgagtccggca 222 |||||||||||||||||||| Sbjct: 937 gagccagtccgagtccggca 956
>gb|AE008862.1| Salmonella typhimurium LT2, section 166 of 220 of the complete genome Length = 22307 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 4313 ccgccgcgccgccgcctgcc 4332
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gagccagtccgagtccggca 222 |||||||||||||||||||| Sbjct: 5213 gagccagtccgagtccggca 5194
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gagccagtccgagtccggca 222 |||||||||||||||||||| Sbjct: 52465 gagccagtccgagtccggca 52446
>emb|AJ250200.1|MBO250200 Mycobacterium bovis BCG truncated Mbk gene for putative serine/threonine protein kinase Length = 2096 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gagccagtccgagtccggca 222 |||||||||||||||||||| Sbjct: 916 gagccagtccgagtccggca 935
>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164941 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atatctgtggatgtggctgg 122 |||||||||||||||||||| Sbjct: 96762 atatctgtggatgtggctgg 96781
>ref|XM_940771.1| PREDICTED: Homo sapiens similar to peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor (LOC651593), mRNA Length = 1668 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gcgccgccgcctgcccctcgccgg 378 |||||||||||||| ||||||||| Sbjct: 1099 gcgccgccgcctgcgcctcgccgg 1076
>ref|XM_928030.1| PREDICTED: Homo sapiens similar to peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor (LOC644943), mRNA Length = 1668 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gcgccgccgcctgcccctcgccgg 378 |||||||||||||| ||||||||| Sbjct: 1099 gcgccgccgcctgcgcctcgccgg 1076
>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170356 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atatctgtggatgtggctgg 122 |||||||||||||||||||| Sbjct: 22462 atatctgtggatgtggctgg 22481
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcccctc 373 ||||||||||| |||||||||||| Sbjct: 6911 ccgccgcgccgacgcctgcccctc 6888
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cgcgccgccgcctgcccctcgccg 377 |||||||||||| ||||||||||| Sbjct: 2490321 cgcgccgccgcccgcccctcgccg 2490344
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 5399211 ccgccgcgccgccgcctgcc 5399192
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 34872428 ccgccgcgccgccgcctgcc 34872409
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 cgcgccgccgcctgcccctc 373 |||||||||||||||||||| Sbjct: 31699306 cgcgccgccgcctgcccctc 31699325
>gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete sequence Length = 197659 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggatgtggctggtgaggcca 130 |||||||||||||||||||| Sbjct: 118594 ggatgtggctggtgaggcca 118575
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 cgcgccgccgcctgcccctc 373 |||||||||||||||||||| Sbjct: 113038 cgcgccgccgcctgcccctc 113057
>emb|BX932773.1| Gallus gallus finished cDNA, clone ChEST481h6 Length = 582 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cccgccgcgccgccgcctgc 368 |||||||||||||||||||| Sbjct: 38 cccgccgcgccgccgcctgc 19
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cggtcccgccgcgccgccgc 364 |||||||||||||||||||| Sbjct: 1018158 cggtcccgccgcgccgccgc 1018139
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcccctc 373 ||||||||||| |||||||||||| Sbjct: 141380 ccgccgcgccgacgcctgcccctc 141357
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 1951503 ccgccgcgccgccgcctgcc 1951522
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529B09 Length = 138188 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 30145 ccgccgcgccgccgcctgcc 30126
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 94023 ccgccgcgccgccgcctgcc 94004
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 31925 ccgccgcgccgccgcctgcc 31906
>dbj|AK108190.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C01, full insert sequence Length = 1212 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cgcgccgccgcctgcccctcgccg 377 |||||||||||| ||||||||||| Sbjct: 321 cgcgccgccgcccgcccctcgccg 344
>dbj|AK107210.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C01, full insert sequence Length = 1708 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 149 ccgccgcgccgccgcctgcc 130
>emb|AJ237587.1|LMA237587 Leishmania major cDNA16 gene family (haspa1, haspb, haspa2, sherp1 and sherp2 genes) Length = 13939 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 ggcagcgagtggcggccgcgcgtg 257 ||||||||| |||||||||||||| Sbjct: 2773 ggcagcgagcggcggccgcgcgtg 2796
>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete sequence Length = 244140 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atatctgtggatgtggctgg 122 |||||||||||||||||||| Sbjct: 33747 atatctgtggatgtggctgg 33766
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ccgccgcgccgccgcctgcc 369 |||||||||||||||||||| Sbjct: 3634359 ccgccgcgccgccgcctgcc 3634378
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cgcgccgccgcctgcccctcgccg 377 |||||||||||| ||||||||||| Sbjct: 2499395 cgcgccgccgcccgcccctcgccg 2499418
>dbj|AB070956.1| Streptomyces avermitilis peptide-7 biosynthetic gene cluster Length = 54101 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cggtcccgccgcgccgccgc 364 |||||||||||||||||||| Sbjct: 29990 cggtcccgccgcgccgccgc 29971 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,702,814 Number of Sequences: 3902068 Number of extensions: 3702814 Number of successful extensions: 100117 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 97985 Number of HSP's gapped (non-prelim): 2136 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
