ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42d07 |
|---|---|
| Clone Library Name | barley_pub |
>TCMO_CICAR (O81928) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 90.5 bits (223), Expect = 2e-18 Identities = 43/50 (86%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GITLGRLVQNFELLPPPGQ KIDT EK GQFS ILKH+TIVCKP Sbjct: 452 ALPILGITLGRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVCKP 501
>TCMO_ZINEL (Q43240) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 90.1 bits (222), Expect = 3e-18 Identities = 42/50 (84%), Positives = 46/50 (92%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GIT+GRLVQNFELLPPPGQDK+DTTEK GQFS ILKH+TIV KP Sbjct: 453 ALPILGITIGRLVQNFELLPPPGQDKVDTTEKGGQFSLHILKHSTIVAKP 502
>TCMO_PETCR (Q43033) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 506 Score = 89.7 bits (221), Expect = 3e-18 Identities = 42/50 (84%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GI +GRLVQNFELLPPPGQ KIDT EK GQFS QILKH+TIVCKP Sbjct: 454 ALPILGIVIGRLVQNFELLPPPGQSKIDTAEKGGQFSLQILKHSTIVCKP 503
>TCMO_POPTM (O24312) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 87.4 bits (215), Expect = 2e-17 Identities = 42/50 (84%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GITLGRLVQNFELLPPPGQ KIDT+EK GQFS ILKH+TIV KP Sbjct: 453 ALPILGITLGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKP 502
>TCMO_POPKI (Q43054) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 87.4 bits (215), Expect = 2e-17 Identities = 42/50 (84%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GITLGRLVQNFELLPPPGQ KIDT+EK GQFS ILKH+TIV KP Sbjct: 453 ALPILGITLGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKP 502
>TCMO_PEA (Q43067) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 86.7 bits (213), Expect = 3e-17 Identities = 41/50 (82%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GIT+GRLVQNFELLPPPGQ KIDT+EK GQFS ILKH+TIV KP Sbjct: 453 ALPILGITIGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKP 502
>TCMO_GLYEC (Q96423) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 86.3 bits (212), Expect = 4e-17 Identities = 41/50 (82%), Positives = 44/50 (88%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GITLGRLVQNFELLPPPGQ K+DT EK GQFS ILKH+TIV KP Sbjct: 453 ALPILGITLGRLVQNFELLPPPGQSKLDTAEKGGQFSLHILKHSTIVAKP 502
>TCMO_HELTU (Q04468) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 85.9 bits (211), Expect = 5e-17 Identities = 41/50 (82%), Positives = 44/50 (88%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GIT+GRLVQNFELLPPPGQ KIDT EK GQFS ILKH+TIV KP Sbjct: 453 ALPILGITIGRLVQNFELLPPPGQSKIDTDEKGGQFSLHILKHSTIVAKP 502
>TCMO_SOYBN (Q42797) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 506 Score = 85.9 bits (211), Expect = 5e-17 Identities = 41/50 (82%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GITLGRLVQNFELLPPPGQ +IDT+EK GQFS ILKH+TIV KP Sbjct: 454 ALPILGITLGRLVQNFELLPPPGQSQIDTSEKGGQFSLHILKHSTIVAKP 503
>TCMO_PHAAU (P37115) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 85.5 bits (210), Expect = 6e-17 Identities = 40/50 (80%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GITLGRLVQNFELLPPPGQ +IDT+EK GQFS ILKH+T+V KP Sbjct: 453 ALPILGITLGRLVQNFELLPPPGQSQIDTSEKGGQFSLHILKHSTVVAKP 502
>TCMO_CATRO (P48522) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 84.7 bits (208), Expect = 1e-16 Identities = 40/50 (80%), Positives = 45/50 (90%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GIT+GRLVQNFELLPPPG+ KIDT+EK GQFS ILKH+TIV KP Sbjct: 453 ALPILGITIGRLVQNFELLPPPGKSKIDTSEKGGQFSLHILKHSTIVLKP 502
>TCMO_MEDSA (P37114) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 506 Score = 84.0 bits (206), Expect = 2e-16 Identities = 40/50 (80%), Positives = 44/50 (88%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GIT+GRLVQN ELLPPPGQ KIDT+EK GQFS ILKH+TIV KP Sbjct: 454 ALPILGITIGRLVQNVELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKP 503
>TCMO_RUTGR (Q9AR74) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 506 Score = 82.4 bits (202), Expect = 5e-16 Identities = 39/50 (78%), Positives = 44/50 (88%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GIT+GR+VQNFELLPPPGQ KIDT+EK GQFS IL H+TIV KP Sbjct: 453 ALPILGITIGRMVQNFELLPPPGQSKIDTSEKGGQFSLFILNHSTIVLKP 502
>TCMO_ARATH (P92994) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic| acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) Length = 505 Score = 80.9 bits (198), Expect = 2e-15 Identities = 37/50 (74%), Positives = 43/50 (86%) Frame = -3 Query: 471 ALPIIGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKP 322 ALPI+GIT+GR+VQNFELLPPPGQ K+DT+EK GQFS IL H+ IV KP Sbjct: 453 ALPILGITIGRMVQNFELLPPPGQSKVDTSEKGGQFSLHILNHSIIVMKP 502
>C79A2_ARATH (Q9FLC8) Cytochrome P450 79A2 (EC 1.-.-.-)| Length = 529 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = -3 Query: 447 LGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKPLEA 313 L RL+Q F LP PG++KID +E K+ + KPL A Sbjct: 481 LARLIQGFTWLPVPGKNKIDISES---------KNDLFMAKPLYA 516
>SMCL_ARATH (Q8VY05) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily C member (AtSwi3C) Length = 985 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = -2 Query: 358 PDPQARHHRLQATRGLIEFRSRSCAYADAGRSIYAC----DSVFCILVFHSSKFN 206 PDP A L+ +E+ SC+ AD R Y C D C F+S KF+ Sbjct: 290 PDPMAADELLKQEGPAVEYHCNSCS-ADCSRKRYHCPKQADFDLCTECFNSGKFS 343
>C77A1_SOLME (P37123) Cytochrome P450 77A1 (EC 1.14.-.-) (CYPLXXVIIA1)| (P-450EG6) (Fragment) Length = 499 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -3 Query: 459 IGITLGRLVQNFELLPPPGQDKIDTTEKPGQFSNQILKHATIVCKPLEA 313 + + L R+VQ FE PG +K+D +EK L+ ++ PL A Sbjct: 453 VNLMLARMVQEFEWFAYPGNNKVDFSEK--------LEFTVVMKNPLRA 493
>POLG_DEN2U (P18356) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1)] (Fragment) Length = 679 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = +2 Query: 215 TTVKHQNAKYRVTCIDRSPRISVRA*PRSELNQASSGLQTMVACLRIWLLNCPGFSVVSI 394 TT +H+ K V + P + + R+E +S G + IW+L PGF++++ Sbjct: 96 TTGEHRREKRSVALV---PHVGMGLETRTETWMSSEGAWKHAQRIEIWILRHPGFTIMAA 152 Query: 395 L 397 + Sbjct: 153 I 153
>POLG_DEN2J (P07564) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3391 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = +2 Query: 215 TTVKHQNAKYRVTCIDRSPRISVRA*PRSELNQASSGLQTMVACLRIWLLNCPGFSVVSI 394 TT +H+ K V + P + + R+E +S G V + W+L PGF++++ Sbjct: 196 TTGEHRREKRSVALV---PHVGMGLETRTETWMSSEGAWKHVQRIETWILRHPGFTIMAA 252 Query: 395 L 397 + Sbjct: 253 I 253
>Y3882_STRCO (O54625) UPF0161 protein SCO3882| Length = 124 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 370 PWLLGGVDLVLPRRRQQLEVLHQASERDADDG 465 PW LGGVD V PR+R + + +A+ R G Sbjct: 59 PWSLGGVDHVPPRKRPRWHEMLRAAWRARKGG 90
>RUVX_CAMJR (Q5HVD6) Putative Holliday junction resolvase (EC 3.1.-.-)| Length = 127 Score = 28.9 bits (63), Expect = 7.1 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = +2 Query: 254 CIDRSPRISVRA*PRSELNQASSGLQTMVACLRIWLLNCPGFSVVSILSCPGGGSSSKFC 433 CID+ + + A R NQA++ ++ ++ I LL I+ P GGSS + Sbjct: 18 CIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLL---------IVGIPKGGSSEEEM 68 Query: 434 TRR 442 TRR Sbjct: 69 TRR 71
>RUVX_CAMJE (Q9PHN2) Putative Holliday junction resolvase (EC 3.1.-.-)| Length = 127 Score = 28.9 bits (63), Expect = 7.1 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = +2 Query: 254 CIDRSPRISVRA*PRSELNQASSGLQTMVACLRIWLLNCPGFSVVSILSCPGGGSSSKFC 433 CID+ + + A R NQA++ ++ ++ I LL I+ P GGSS + Sbjct: 18 CIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLL---------IVGIPKGGSSEEEM 68 Query: 434 TRR 442 TRR Sbjct: 69 TRR 71
>PHK_SYNP6 (Q5N0G7) Probable phosphoketolase (EC 4.1.2.-)| Length = 796 Score = 28.5 bits (62), Expect = 9.2 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = -3 Query: 417 LPPPGQDKIDTTEKPGQFSNQILKH 343 +P PG+ + D+T GQF ++++H Sbjct: 391 VPAPGKSRADSTRPLGQFLREVIRH 415
>PHYB_ORYSA (P25764) Phytochrome B| Length = 1171 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 9/57 (15%) Frame = -3 Query: 222 TVVSLIFLWCWAICLHLRRRCCKFPNSWQCD--VKLLGSKDDM-------ITQKHIL 79 ++ S + LW +C H RC FP + C+ ++ G + +M +++KHIL Sbjct: 398 SIPSAMKLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHIL 454
>CEP72_HUMAN (Q9P209) Centrosomal protein of 72 kDa (Cep72 protein)| Length = 647 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +1 Query: 274 HQRTRMTEI*TQSSLEWLADDGGVLEDLVAELPWLLG 384 H R + TE + SL ADD VL +L+AE W LG Sbjct: 174 HPRAKCTEALAKQSLVMDADDEAVL-NLIAECEWDLG 209
>APEB_BORBU (O51572) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 423 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/42 (26%), Positives = 26/42 (61%) Frame = -3 Query: 126 KLLGSKDDMITQKHILLKSSFELVMNSKITKNENRLRILLFF 1 K++G++ + + K++ KS +MNS + + ++ +I +FF Sbjct: 213 KIIGTEGEFLASKNLDNKSGCHAIMNSYVHTSNDKNKIAVFF 254
>AEGA_ECOLI (P37127) Protein aegA| Length = 659 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Frame = +2 Query: 185 IAQHQRKIKLTTVKHQNAKYRVTCIDRSPRISVRA*PRSELNQASSGLQT----MVACLR 352 ++QH ++T +KHQ + VTC R+ P ++ +Q + C + Sbjct: 33 LSQHHFHPRITVIKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGC-K 91 Query: 353 IWLLNCPGFSVVSILSCP 406 ++ CP F + I+ P Sbjct: 92 SCVVACP-FGTMQIVLTP 108
>FTSK_TREPA (O83964) DNA translocase ftsK| Length = 799 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = -3 Query: 462 IIGITLGRLVQNFELLPPPG 403 I GI G +V FELLPPPG Sbjct: 377 ITGIKKGPVVTMFELLPPPG 396 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,286,258 Number of Sequences: 219361 Number of extensions: 1177174 Number of successful extensions: 3474 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3472 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
