ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42d04 |
|---|---|
| Clone Library Name | barley_pub |
>XIP1_WHEAT (Q8L5C6) Xylanase inhibitor protein 1 precursor (Class III| chitinase homolog) (XIP-I protein) Length = 304 Score = 163 bits (412), Expect = 1e-40 Identities = 71/78 (91%), Positives = 75/78 (96%) Frame = -2 Query: 340 QNFGWEGSWNEWTAAYPATRLYVGLTADDKSYQWVHPKNVYYSVAPVSQKKDNYGGIMLW 161 QN GWEGSW++WTAAYPATR YVGLTADDKS+QWVHPKNVYY VAPV+QKKDNYGGIMLW Sbjct: 227 QNLGWEGSWDKWTAAYPATRFYVGLTADDKSHQWVHPKNVYYGVAPVAQKKDNYGGIMLW 286 Query: 160 DRYFDKQTNYSSLIKYYA 107 DRYFDKQTNYSSLIKYYA Sbjct: 287 DRYFDKQTNYSSLIKYYA 304
>XIP1_ORYSA (Q7GCM7) Xylanase inhibitor protein 1 precursor (Class III| chitinase homolog a) (RIXI protein) Length = 304 Score = 80.9 bits (198), Expect = 7e-16 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Frame = -2 Query: 331 GWEGSWNEWTAAYPATRLYVGLTADDK--SYQWVHPKNVYYSVAPVSQKKDNYGGIMLWD 158 G WN+WTA YP + +Y+GL A + V K +YY + P QK NYGGIMLWD Sbjct: 228 GVMAQWNKWTARYPGSHVYLGLAAANVPGKNDNVFIKQLYYDLLPNVQKAKNYGGIMLWD 287 Query: 157 RYFDKQTNYSSLIKYYA 107 R++DKQT Y +KY+A Sbjct: 288 RFYDKQTGYGKTVKYWA 304
>XIP2_ORYSA (Q53NL5) Xylanase inhibitor protein 2 precursor (Class III| chitinase homolog h) Length = 290 Score = 68.6 bits (166), Expect = 4e-12 Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTAD-DKSYQWVHPKNVYYSVAPVSQKKDNYGGIMLWDRYFDK 143 SW +W AA+P +++Y+GL A ++ W+ K++YY + + NYGG+ ++DRYFDK Sbjct: 223 SWEKWAAAFPGSKVYIGLVASPEQDSAWMFQKDLYYEMLQFVRSLPNYGGLAIYDRYFDK 282 Query: 142 QTNYS 128 + NY+ Sbjct: 283 KANYT 287
>CHIT3_VITVI (P51614) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 301 Score = 58.9 bits (141), Expect = 3e-09 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTADDKSY-QWVHPKNVYYS-VAPVSQKKDNYGGIMLWDRYFD 146 SWN WT++ +T ++GL A + + P NV S + PV ++ YGG+MLW +Y+D Sbjct: 229 SWNRWTSSINSTGSFMGLPASSAAAGRGFIPANVLTSQILPVIKRSPKYGGVMLWSKYYD 288 Query: 145 KQTNYSSLIK 116 Q+ YSS IK Sbjct: 289 DQSGYSSSIK 298
>CHIB_TOBAC (P29061) Basic endochitinase precursor (EC 3.2.1.14)| Length = 294 Score = 55.5 bits (132), Expect = 3e-08 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Frame = -2 Query: 316 WNEWTAAYPATRLYVGL----TADDKSYQWVHPKNVYYS-VAPVSQKKDNYGGIMLWDRY 152 WN+WT+ PA +LY+GL TA Y PK V S V P + YGG+MLW+R Sbjct: 224 WNQWTSI-PAKKLYIGLPAAKTAAGNGYI---PKQVLMSQVLPFLKGSSKYGGVMLWNRK 279 Query: 151 FDKQTNYSSLIK 116 FD Q YSS I+ Sbjct: 280 FDVQCGYSSAIR 291
>CHLY_HEVBR (P23472) Hevamine-A precursor [Includes: Chitinase (EC 3.2.1.14);| Lysozyme (EC 3.2.1.17)] Length = 311 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTADDKSYQ--WVHPKNVYYSVAPVSQKKDNYGGIMLWDRYFD 146 SWN WT + A ++++GL A ++ +V P + + P +K YGG+MLW +++D Sbjct: 227 SWNRWTTSINAGKIFLGLPAAPEAAGSGYVPPDVLISRILPEIKKSPKYGGVMLWSKFYD 286 Query: 145 KQTNYSSLI 119 + YSS I Sbjct: 287 DKNGYSSSI 295
>CHIA_ARATH (P19172) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 302 Score = 53.1 bits (126), Expect = 2e-07 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTADDKSYQ--WVHPKNVYYSVAPVSQKKDNYGGIMLWDRYFD 146 SWN+WT + A + ++GL A ++ ++ P + + P +K YGG+MLW +++D Sbjct: 230 SWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVLTSQILPTLKKSRKYGGVMLWSKFWD 289 Query: 145 KQTNYSSLI 119 + YSS I Sbjct: 290 DKNGYSSSI 298
>CHIA_CICAR (P36908) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 293 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTADDKSYQ--WVHPKNVYYS-VAPVSQKKDNYGGIMLWDRYF 149 +WN+WT++ A ++++G+ A D + + P +V S V P + YGG+M+WDR+ Sbjct: 221 AWNQWTSSQ-AKQVFLGVPASDAAAPSGGLIPADVLTSQVLPAIKTSPKYGGVMIWDRFN 279 Query: 148 DKQTNYSSLIK 116 D Q+ YS+ IK Sbjct: 280 DAQSGYSNAIK 290
>CHIA_CUCSA (P17541) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 292 Score = 50.4 bits (119), Expect = 1e-06 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTADDKSYQ--WVHPKNVYYS-VAPVSQKKDNYGGIMLWDRYF 149 SWN+WTA +P ++LY+GL A ++ P +V S V P + NYGG+MLW + F Sbjct: 221 SWNQWTA-FPTSKLYMGLPAAREAAPSGGFIPADVLISQVLPTIKASSNYGGVMLWSKAF 279 Query: 148 DKQTNYSSLIK 116 D YS IK Sbjct: 280 D--NGYSDSIK 288
>CHIA_PHAAN (P29024) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 298 Score = 48.1 bits (113), Expect = 5e-06 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTADDKSY-QWVHPKNVYYS-VAPVSQKKDNYGGIMLWDRYFD 146 SWN+WT++ A +L++G+ A + P +V S V P + YGG+MLWDR+ D Sbjct: 227 SWNQWTSSQ-AKQLFLGVPASTAAAGSGFIPADVLTSQVLPTIKGSSKYGGVMLWDRFND 285 Query: 145 KQTNYSSLI 119 Q+ YS I Sbjct: 286 GQSGYSGAI 294
>CHIE_BETVU (P36910) Acidic endochitinase SE2 precursor (EC 3.2.1.14)| Length = 293 Score = 42.4 bits (98), Expect = 3e-04 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = -2 Query: 319 SWNEWTAAYPATRLYVGLTAD-DKSYQWVHPKNVYYS-VAPVSQKKDNYGGIMLWDRYFD 146 SWN+WT A ++++GL A D + P + S V P + YGG+MLW + +D Sbjct: 224 SWNQWTTVQ-ANQIFLGLPASTDAAGSGFIPADALTSQVLPTIKGSAKYGGVMLWSKAYD 282 Query: 145 KQTNYSSLIK 116 + YSS IK Sbjct: 283 --SGYSSAIK 290
>CHIA_TOBAC (P29060) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 291 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = -2 Query: 316 WNEWTAAYPATRLYVGL-TADDKSYQWVHPKNVYYS-VAPVSQKKDNYGGIMLWDRYFDK 143 WN+W A A ++++GL A + P +V S V P+ YGG+MLW +++D Sbjct: 223 WNQWNAIQ-AGKIFLGLPAAQGAAGSGFIPSDVLVSQVLPLINGSPKYGGVMLWSKFYD- 280 Query: 142 QTNYSSLIK 116 YSS IK Sbjct: 281 -NGYSSAIK 288
>CONB_CANEN (P49347) Concanavalin B precursor (Con B)| Length = 324 Score = 35.4 bits (80), Expect = 0.035 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 7/76 (9%) Frame = -2 Query: 319 SWNEWT-AAYPATR-LYVGLTADDKSYQ---WVHPKNVYYSVAP-VSQKKDNYGGIMLWD 158 +W WT + YP + L++ L A + ++ P + V P + + Y GI LW+ Sbjct: 232 AWLSWTKSVYPRDKNLFLELPASQATAPGGGYIPPSALIGQVLPYLPDLQTRYAGIALWN 291 Query: 157 RYFDKQTNYS-SLIKY 113 R DK+T YS ++I+Y Sbjct: 292 RQADKETGYSTNIIRY 307
>NIRB_KLEOX (Q06458) Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)| Length = 957 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -2 Query: 271 GLTADDKSYQWVH-PKNVYYSVAPVSQKKDNYGGIMLWD 158 G T +SYQW H P+ VY + + K+ GG+++ D Sbjct: 336 GRTPGCQSYQWTHGPQQVYKKIVVSADGKNLLGGVLVGD 374
>G6PI_NEUCR (Q7S986) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 561 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Frame = -2 Query: 334 FGWE----GSWNEWTAAYPATRLYVGLTADDKSYQWVHPKNVYYSVAPVSQKKDNYGGIM 167 FG+E G ++ W+A + LYVG K H + ++ AP+ + GGI+ Sbjct: 276 FGFESWVGGRYSVWSAIGLSVALYVGYENFHKFLAGAHAMDNHFRTAPLKENIPVLGGIL 335 Query: 166 -LW-DRYFDKQTN 134 +W +++ QT+ Sbjct: 336 SVWYSNFYNAQTH 348
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/33 (51%), Positives = 17/33 (51%) Frame = +1 Query: 154 TGPRA*CRRSCPSSATPARRCSKRSWGVPTGRT 252 TGPRA C R SS PARR R PT T Sbjct: 968 TGPRA-CPREAESSEEPARRHRARHKAPPTQET 999
>G6PI_ASHGO (Q758L0) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 555 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Frame = -2 Query: 334 FGWE----GSWNEWTAAYPATRLYVGLTADDKSYQWVHPKNVYYSVAPVSQKKDNYGGIM 167 FG+E G ++ W+A + LY+G + + + +++ P+ GG++ Sbjct: 274 FGFESWVGGRYSVWSAIGLSVALYIGFDQFEDFLKGAEAVDKHFTSTPIEDNIPLLGGLL 333 Query: 166 -LW-DRYFDKQTN 134 +W + +FD QT+ Sbjct: 334 SVWYNNFFDAQTH 346
>PIB2_YEAST (P53191) Protein PIB2| Length = 635 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%) Frame = -3 Query: 99 YLHKP-----RLHHRRFDSDVLLQARIKRGLYLDK*KN 1 Y HKP R HH R D+ Q ++ LYLD N Sbjct: 460 YCHKPFTLWERKHHCRHCGDIFCQDHLRHWLYLDSQAN 497
>PIMT_AERPE (Q9YDA1) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)| (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) Length = 256 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = -1 Query: 293 PCHPVIRR-AHGGRQVLPVGTPQERLL 216 P P++ + A GGR V+P+GTP ++L Sbjct: 187 PPKPLVEQLAPGGRMVIPIGTPDLQIL 213
>CHIA_RAT (Q6RY07) Acidic mammalian chitinase precursor (EC 3.2.1.14)| (AMCase) Length = 473 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = -2 Query: 322 GSWNEWTAAYPATRLYVGLTADDKSYQWVHPKNVY-YSVAPVSQKKDNYGGIMLW 161 G+ +W A Y K +WV N+ +SV K++N+GG M+W Sbjct: 313 GATQDWDAPQEVPYAY-------KGNEWVGYDNIKSFSVKAQWLKQNNFGGAMIW 360
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = -2 Query: 295 YPATRLYVGLTADDKSYQWVHPKNVYYSVAPVSQKKDNYGGIMLWDRYFDKQTNYSSLIK 116 YP ++ V + D+ + P+N ++ + +K+ GI +W D + + K Sbjct: 209 YPGGKVLVSFSTDNSG--GLKPRNGFFDACSILKKQGKLHGIFVWSA--DDSLMSNDVFK 264 Query: 115 YYA*AILAQATLAS 74 Y + AQ+ LAS Sbjct: 265 Y---EMQAQSLLAS 275
>ALG12_MOUSE (Q8VDB2) Dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,| 6-mannosyltransferase (EC 2.4.1.-) (Mannosyltransferase ALG12 homolog) Length = 483 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = -2 Query: 298 AYPATRLYVGLTADDKSYQW---VHPKNVYYSVAPVSQKKDNYG-GIMLWDRY 152 A PA L +GLT SY W V P+ V V K N+G +LW Y Sbjct: 214 AIPAGLLCLGLTVAVDSYFWRYLVWPEGVVLGYNTVLNKSSNWGTSPLLWYFY 266
>PIMT_GEOSL (Q74CZ5) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)| (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) Length = 207 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -1 Query: 263 GGRQVLPVGTPQERLLQRRAGVAEEGQLRRHHALG 159 GGR V+PVGT E++L R E+G + R + G Sbjct: 158 GGRLVIPVGTQFEQVLV-RVVKQEDGSVERENITG 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,549,845 Number of Sequences: 219361 Number of extensions: 680552 Number of successful extensions: 2097 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2045 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2087 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
