ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 392 e-106
2dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhi... 224 1e-55
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
4dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
5gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
7dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
8dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
10dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for ch... 56 8e-05
11dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homolo... 56 8e-05
12dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homolo... 56 8e-05
13dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homolo... 56 8e-05
14dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homolo... 56 8e-05
15dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homolo... 56 8e-05
16dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for ... 56 8e-05
17dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
18dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
19dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
20ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.019
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
22dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
23dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
24ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.29
25gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv.... 44 0.29
26gb|AY107125.1| Zea mays PCO125117 mRNA sequence 44 0.29
27dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
28emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 i... 40 4.5
29dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DN... 40 4.5
30dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.5 
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene)
          Length = 915

 Score =  392 bits (198), Expect = e-106
 Identities = 228/238 (95%)
 Strand = Plus / Minus

                                                                       
Query: 104 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 915 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtatcggtccca 856

                                                                       
Query: 164 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtaaac 223
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct: 855 gagcatgatgccgccgtagttgtccttcttctgcgccaccggcgcgacgccgtagtagac 796

                                                                       
Query: 224 gttcttggggtgtacccactggtaggacttgtcgtccgccgtgagcccgacgtataaccg 283
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 795 gttcttggggtgtacccactggtgggacttgtcgtccgccgtgagcccgacgtagaaccg 736

                                                                     
Query: 284 ggtggcagggtacgccgccgtccactcgttccacgagccctcccacccaaagttctgg 341
           |||||| ||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 735 ggtggccgggtacgccgccgtccacttgtcccacgagccctcccacccaaggttctgg 678
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>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III,
           complete cds
          Length = 934

 Score =  224 bits (113), Expect = 1e-55
 Identities = 182/205 (88%)
 Strand = Plus / Minus

                                                                       
Query: 104 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 163
           ||||||||||||||||||  |||| ||||||| | |||||||||||||||| ||||||||
Sbjct: 932 tcaggcgtagtacttgatgtagctactgtagtcgctctgcttgtcgaagtatcggtccca 873

                                                                       
Query: 164 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtaaac 223
           ||||||||  ||||||||||||||||||||||||  |||||||| || || |||||| ||
Sbjct: 872 gagcatgaccccgccgtagttgtccttcttctgcaccaccggcgtgatgccgtagtagac 813

                                                                       
Query: 224 gttcttggggtgtacccactggtaggacttgtcgtccgccgtgagcccgacgtataaccg 283
           |||||||||||||| ||||||||| ||||| ||||| || |||||||||| | | |||||
Sbjct: 812 gttcttggggtgtatccactggtacgacttctcgtcggcggtgagcccgatgaagaaccg 753

                                    
Query: 284 ggtggcagggtacgccgccgtccac 308
           |||||| ||||||||||||||||||
Sbjct: 752 ggtggccgggtacgccgccgtccac 728
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                            
Query: 116      cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 175
                ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 14484656 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 14484715

                                                                            
Query: 176      gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtaaacgttcttggggtg 235
                |||||||||||||  ||||||||    ||| ||||||  |||||| ||||||||||||||
Sbjct: 14484716 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 14484775

                       
Query: 236      tacccac 242
                 ||||||
Sbjct: 14484776 cacccac 14484782
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>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021M10
          Length = 163416

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                         
Query: 116   cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 175
             ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 77830 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 77889

                                                                         
Query: 176   gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtaaacgttcttggggtg 235
             |||||||||||||  ||||||||    ||| ||||||  |||||| ||||||||||||||
Sbjct: 77890 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 77949

                    
Query: 236   tacccac 242
              ||||||
Sbjct: 77950 cacccac 77956
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>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0022E16 map C481S, complete sequence
          Length = 179668

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 137   ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
             ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 82293 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 82246



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 143   cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
             ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 88121 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 88163



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 145   tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
             |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 83663 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 83703
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 137      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28123738 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28123691



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 143      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28129566 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28129608



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 145      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28125108 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28125148
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>dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J19, full
           insert sequence
          Length = 1176

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 988 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 941
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>dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E01, full
           insert sequence
          Length = 1234

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 989 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 942
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 137      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28108616 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28108569



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 143      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28114444 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28114486



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 145      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28109986 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28110026
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>dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
           cds
          Length = 1220

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 963 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 916
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>dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C60571
          Length = 1220

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 975 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 928
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>dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C11701
          Length = 1171

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 933 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 886
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>dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C12269
          Length = 1214

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 973 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 926
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>dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C3540
          Length = 1229

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 972 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 925
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>dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds,clone:C10295
          Length = 1199

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 954 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 907
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>dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for class III chitinase
           homologue (OsChib3H-a)H-, complete cds, clone:C60129
          Length = 1187

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 137 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 184
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 957 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 910
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>dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101A20, full
           insert sequence
          Length = 1162

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 143 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 927 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 885
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>dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full
           insert sequence
          Length = 1193

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 143 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 931 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 889
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>dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M21, full
           insert sequence
          Length = 1153

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 143 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 918 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 876
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>ref|NM_193094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 139 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 198
           |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 916 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 857

                   
Query: 199 acaccggc 206
           || |||||
Sbjct: 856 actccggc 849
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 139      tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 198
                |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 26162477 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 26162418

                        
Query: 199      acaccggc 206
                || |||||
Sbjct: 26162417 actccggc 26162410
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>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full
           insert sequence
          Length = 1165

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 139 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 198
           |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 964 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 905

                   
Query: 199 acaccggc 206
           || |||||
Sbjct: 904 actccggc 897
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 139   tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 198
             |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 54335 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 54276

                     
Query: 199   acaccggc 206
             || |||||
Sbjct: 54275 actccggc 54268
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>ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus similar to putative
           endoplasmic reticulum protein, with at least 5
           transmembrane domains, of eukaryotic origin (56.3 kD)
           (4P439) (LOC592817), mRNA
          Length = 1917

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 126 ctgctgtagttggtctgcttgt 147
           ||||||||||||||||||||||
Sbjct: 86  ctgctgtagttggtctgcttgt 107
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>gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv. INRA 258,
           mercuric chloride-treated, leaves, mRNA Partial, 945 nt]
          Length = 945

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 156 cggtcccagagcatgatgccgccgtagttg 185
           |||||||| | |||||||||||||||||||
Sbjct: 870 cggtcccacaccatgatgccgccgtagttg 841
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>gb|AY107125.1| Zea mays PCO125117 mRNA sequence
          Length = 1252

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 156 cggtcccagagcatgatgccgccgtagttg 185
           |||||||| | |||||||||||||||||||
Sbjct: 928 cggtcccacaccatgatgccgccgtagttg 899
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>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full
           insert sequence
          Length = 1161

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 145 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 185
           |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 940 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 900
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>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7
             Contains three CpG islands, complete sequence
          Length = 110786

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    caatacatcagaatcaaatc 68
             ||||||||||||||||||||
Sbjct: 43424 caatacatcagaatcaaatc 43405
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>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence
          Length = 94287

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 164   gagcatgatgccgccgtagttgtccttc 191
             ||||||||||| |||| |||||||||||
Sbjct: 66383 gagcatgatgcggccggagttgtccttc 66356
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     ttctgcgacaccggcgcgac 211
               ||||||||||||||||||||
Sbjct: 5735197 ttctgcgacaccggcgcgac 5735178


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,747,637
Number of Sequences: 3902068
Number of extensions: 1747637
Number of successful extensions: 29264
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29128
Number of HSP's gapped (non-prelim): 134
length of query: 341
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 319
effective length of database: 17,147,199,772
effective search space: 5469956727268
effective search space used: 5469956727268
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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