>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence
          Length = 206482

 Score = 46.1 bits (23), Expect = 0.048
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 95     ttccaccaatgataaatatgaat 117
              |||||||||||||||||||||||
Sbjct: 108155 ttccaccaatgataaatatgaat 108177

>gb|AC102274.20| Mus musculus chromosome 3, clone RP24-286L19, complete sequence
          Length = 183113

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 101 caatgataaatatgaatcattt 122
           ||||||||||||||||||||||
Sbjct: 590 caatgataaatatgaatcattt 569

>gb|AC162300.3| Mus musculus chromosome 3, clone RP23-224F23, complete sequence
          Length = 162774

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    caatgataaatatgaatcattt 122
              ||||||||||||||||||||||
Sbjct: 102148 caatgataaatatgaatcattt 102169

>emb|AL672056.4| Mouse DNA sequence from clone RP23-467O2 on chromosome X, complete
              sequence
          Length = 150695

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 103    atgataaatatgaatcatttcc 124
              ||||||||||||||||||||||
Sbjct: 126180 atgataaatatgaatcatttcc 126201

>gb|AY504728.1| Barnadesia caryophylla NADH dehydrogenase (ndhF) gene, partial cds;
           chloroplast
          Length = 664

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   agaaaaatacaagaacatata 21
           |||||||||||||||||||||
Sbjct: 530 agaaaaatacaagaacatata 510

>gb|AY504727.1| Dasyphyllum reticulatum NADH dehydrogenase (ndhF) gene, partial
           cds; chloroplast
          Length = 641

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   agaaaaatacaagaacatata 21
           |||||||||||||||||||||
Sbjct: 536 agaaaaatacaagaacatata 516

>gb|AC165337.2| Mus musculus BAC clone RP24-356N8 from chromosome 12, complete sequence
          Length = 155881

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     aataatatgtgatttccccaa 71
              |||||||||||||||||||||
Sbjct: 150416 aataatatgtgatttccccaa 150436

>gb|AC131320.8| Mus musculus chromosome 12, clone RP23-398E18, complete sequence
          Length = 210230

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    aataatatgtgatttccccaa 71
             |||||||||||||||||||||
Sbjct: 29587 aataatatgtgatttccccaa 29607

>gb|L39392.1|DPUCPNDHF Dasyphyllum argenteum chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    agaaaaatacaagaacatata 21
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|L39396.1|DOICPNDHF Doniophyton anomalum chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    agaaaaatacaagaacatata 21
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|L39393.1|CQRCPNDHF Chuquiraga jussieui chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    agaaaaatacaagaacatata 21
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|L39394.1|BRICPNDHF Barnadesia caryophylla chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    agaaaaatacaagaacatata 21
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170

>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      ctcataataatatgtgattt 65
               ||||||||||||||||||||
Sbjct: 4565365 ctcataataatatgtgattt 4565384

>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      ctcataataatatgtgattt 65
               ||||||||||||||||||||
Sbjct: 4566458 ctcataataatatgtgattt 4566477

>ref|XM_654101.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1589.2), mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gggggagcaatacagatatc 46
            ||||||||||||||||||||
Sbjct: 1514 gggggagcaatacagatatc 1533

>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      ctcataataatatgtgattt 65
               ||||||||||||||||||||
Sbjct: 4626790 ctcataataatatgtgattt 4626809

>gb|AC100729.21| Mus musculus chromosome 19, clone RP24-286E16, complete sequence
          Length = 167242

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 62     atttccccaatgatacataagaat 85
              ||||||||||||||| ||||||||
Sbjct: 130177 atttccccaatgatagataagaat 130200

>gb|AC084291.27| Homo sapiens 12 BAC RP11-465L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125429

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   gttcatctatggcctaatga 157
             ||||||||||||||||||||
Sbjct: 63069 gttcatctatggcctaatga 63088

>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      ctcataataatatgtgattt 65
               ||||||||||||||||||||
Sbjct: 4565238 ctcataataatatgtgattt 4565257

>gb|AC122329.4| Mus musculus BAC clone RP23-341A12 from 19, complete sequence
          Length = 192481

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    atttccccaatgatacataagaat 85
             ||||||||||||||| ||||||||
Sbjct: 35971 atttccccaatgatagataagaat 35994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,714,320
Number of Sequences: 3902068
Number of extensions: 2714320
Number of successful extensions: 50455
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50323
Number of HSP's gapped (non-prelim): 132
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)