ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPR1_MOUSE (Q8BFQ3) Sphingosylphosphorylcholine receptor (G-prot... 30 2.9
2GFRA4_RAT (Q9EPI2) GDNF family receptor alpha-4 precursor (GFR-a... 29 3.7
3PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant p... 29 4.9
4PCGF6_HUMAN (Q9BYE7) Polycomb group RING finger protein 6 (RING ... 29 4.9
5TBCD2_HUMAN (Q9BYX2) TBC1 domain family member 2 (Prostate antig... 29 4.9
6GSHB_PROMP (Q7TUG9) Glutathione synthetase (EC 6.3.2.3) (Glutath... 28 6.4
7UBP37_HUMAN (Q86T82) Ubiquitin carboxyl-terminal hydrolase 37 (E... 28 6.4
8ERYA2_SACER (Q03132) Erythronolide synthase, modules 3 and 4 (EC... 28 8.3

>SPR1_MOUSE (Q8BFQ3) Sphingosylphosphorylcholine receptor (G-protein coupled|
           receptor 68)
          Length = 365

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +3

Query: 288 RTSRAQEAYQISSPAASNPRSGCPEEGEQP 377
           RTSRA+EAY + +P AS  +SG   +GE+P
Sbjct: 312 RTSRAREAYPLGAPEASG-KSGA--QGEEP 338



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>GFRA4_RAT (Q9EPI2) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
           (Persephin receptor)
          Length = 273

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +3

Query: 309 AYQISSPAASNPRSGCPEEGEQPLSRAVATGCVG 410
           A+Q S   A   R GCPEEG     RA A G VG
Sbjct: 150 AFQASCAPAPGSRDGCPEEGGPRCLRAYA-GLVG 182



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>PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant polycystic|
           kidney disease protein 1)
          Length = 4303

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -3

Query: 373 CSPSSGHPDLGFEAAGDEIW*ASWAREVRLKLELPWI*CCCSCALYLL 230
           CSP+ GHP  G +A       +SW   +  +LE  W   C +CAL LL
Sbjct: 729 CSPAPGHP--GPQAPYLSANASSWLPHLPAQLEGTW--ACPACALRLL 772



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>PCGF6_HUMAN (Q9BYE7) Polycomb group RING finger protein 6 (RING finger protein|
           134) (Mel18 and Bmi1-like RING finger)
          Length = 352

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 324 SPAASNPRSGCPEEGEQPLSRAVATGCVG 410
           SP A  P     EEG  PLS   A GC G
Sbjct: 32  SPPALTPAPAAGEEGPAPLSETGAPGCSG 60



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>TBCD2_HUMAN (Q9BYX2) TBC1 domain family member 2 (Prostate antigen recognized|
           and indentified by SEREX) (PARIS-1)
          Length = 917

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 246 QLQQHQIQGNSSLRRTSRAQEAYQISSPAASNPRSGCPEEGEQPLSRAVAT 398
           Q   H I+GN   + T           P   +P+SG P+  EQPL+   +T
Sbjct: 216 QNTMHNIRGNKQAQGTGH-------EPPGEDSPQSGEPQREEQPLASDAST 259



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>GSHB_PROMP (Q7TUG9) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase)|
           (GSH synthetase) (GSH-S) (GSHase)
          Length = 307

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 337 EAAGDEIW*ASWAREVRLKLELPWI 263
           EA GDE+W +SW  EV      PW+
Sbjct: 43  EARGDEVWASSWRAEV-----CPWV 62



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>UBP37_HUMAN (Q86T82) Ubiquitin carboxyl-terminal hydrolase 37 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 37)
           (Ubiquitin-specific-processing protease 37)
           (Deubiquitinating enzyme 37)
          Length = 979

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
 Frame = +3

Query: 78  HLYGSTQVFTTTLASQRGTHERKLRIYGQKSAHQPGSTINQ*ICNYRTMNWRRYRAQL-- 251
           H  G T +  T ++SQ  + +R L    Q        ++ +  CN     W + R  L  
Sbjct: 279 HSSGGTNLDRTNVSSQTPSAKRSLGFLPQPVP----LSVKKLRCNQDYTGWNKPRVPLSS 334

Query: 252 -QQHQIQGNSSLRRT----SRAQEAYQISSPAASNPRSGCP 359
            QQ Q+QG S+L  T    +  Q  + + S A    + G P
Sbjct: 335 HQQQQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLKQGIP 375



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>ERYA2_SACER (Q03132) Erythronolide synthase, modules 3 and 4 (EC 2.3.1.94) (ORF|
            2) (6-deoxyerythronolide B synthase II) (DEBS 2)
          Length = 3566

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = -1

Query: 303  GREKFVLNWSCPGSDVAVAVPXXXXXXXXXXXXXIGLLLILVDAPTFAHICAIFSHEFHA 124
            G E+ VL  +CPG D+  AV                L   L D P  A + A     F +
Sbjct: 1154 GAERLVLAGACPGDDLLAAVEEAGASAVVCAQDAAALREALGDEPVTALVHAGTLTNFGS 1213

Query: 123  VMQV 112
            + +V
Sbjct: 1214 ISEV 1217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,332,815
Number of Sequences: 219361
Number of extensions: 1157394
Number of successful extensions: 3225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3224
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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