ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY789531.1| Oryza sativa (indica cultivar-group) prenylated R... 117 3e-23
2gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
4dbj|AK106175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5dbj|AK104118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
6dbj|AK060006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
8dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
9dbj|AK108526.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
10gb|AY110204.1| Zea mays CL16631_1 mRNA sequence 60 6e-06
11emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 48 0.023
12gb|DP000017.1| Sus scrofa target 1 genomic scaffold 42 1.4
13gb|AC146932.3| Sus scrofa clone RP44-244C10, complete sequence 42 1.4
14emb|CR974572.21| Pig DNA sequence from clone CH242-200F24 on chr... 42 1.4
15emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 ... 42 1.4
16emb|CR956415.12| Pig DNA sequence from clone PigE-223M7 on chrom... 42 1.4
17emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in ... 42 1.4
18emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chro... 42 1.4
19emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chr... 42 1.4
20emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chrom... 42 1.4
21emb|AL731563.9| Human DNA sequence from clone RP11-344N10 on chr... 42 1.4
22emb|AL591420.5| Zebrafish DNA sequence from clone BUSM1-221H6 in... 42 1.4
23gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence 42 1.4
24gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, comp... 42 1.4
25gb|AC158442.3| Sus scrofa clone RP44-406A19, complete sequence 42 1.4
26emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complet... 42 1.4
27gb|AC097586.3| Sus scrofa clone RP44-394E19, complete sequence 42 1.4
28gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence 42 1.4
29emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in ... 42 1.4
30emb|CR956385.13| Pig DNA sequence from clone CH242-177A17 on chr... 42 1.4
31emb|CT009664.17| Pig DNA sequence from clone CH242-113D8 on chro... 42 1.4
32emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chrom... 42 1.4
33gb|AY663543.1| Sus scrofa albumin gene, complete cds 40 5.5
34ref|XM_421595.1| PREDICTED: Gallus gallus similar to cadherin-re... 40 5.5
35gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein ... 40 5.5
36emb|CR956431.10| Pig DNA sequence from clone PigE-60M9 on chromo... 40 5.5
37emb|CR956640.5| Pig DNA sequence from clone CH242-155M9 on chrom... 40 5.5
38emb|CR974432.6| Pig DNA sequence from clone PigE-204L22 on chrom... 40 5.5
39emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chro... 40 5.5
40emb|CR956369.6| Pig DNA sequence from clone PigI-416G4 on chromo... 40 5.5
41emb|CR974434.12| Pig DNA sequence from clone CH242-241E19 on chr... 40 5.5
42emb|CR974452.4| Pig DNA sequence from clone PigE-201A17 on chrom... 40 5.5
43emb|CR956391.5| Pig DNA sequence from clone PigE-133M12 on chrom... 40 5.5
44emb|CR956422.6| Pig DNA sequence from clone PigE-93N11 on chromo... 40 5.5
45emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chrom... 40 5.5
46gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence 40 5.5
47gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, com... 40 5.5
48gb|AC091403.3| Sus scrofa clone RP44-431F19, complete sequence 40 5.5
49gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence 40 5.5
50emb|AL034408.2|HS710L4 Human DNA sequence from clone RP4-710L4 o... 40 5.5
51emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic regi... 40 5.5
52emb|AL773562.15| Pig DNA sequence from clone XX-649D6, complete ... 40 5.5
53gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.5
54dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ... 40 5.5
55dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31... 40 5.5
56gb|DQ072198.1| Uncultured bacterium clone M60-134 putative dissi... 40 5.5
57gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.5
58gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Canc... 40 5.5
59dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
60emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, comple... 40 5.5
61dbj|AB106555.1| Sus scrofa IL-16 gene for interleukin 16, comple... 40 5.5
62emb|CT009503.7| Pig DNA sequence from clone CH242-137E23 on chro... 40 5.5
63emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chro... 40 5.5
64emb|AJ009912.1|SSC9912 Sus scrofa plp gene 40 5.5 
>gb|AY789531.1| Oryza sativa (indica cultivar-group) prenylated Rab acceptor
           protein 1 (Pra1) mRNA, complete cds
          Length = 960

 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/105 (89%), Gaps = 3/105 (2%)
 Strand = Plus / Minus

                                                                       
Query: 306 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 362
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 765 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 706

                                                        
Query: 363 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtc 407
           |||||| || || ||||| |||||||||||||| ||||| |||||
Sbjct: 705 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtc 661
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>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01,
             complete sequence
          Length = 146432

 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/105 (89%), Gaps = 3/105 (2%)
 Strand = Plus / Minus

                                                                         
Query: 306   gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 362
             ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 72057 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 71998

                                                          
Query: 363   gaaggagagcagcccctgagccgcgctgttgccactggctgcgtc 407
             |||||| || || ||||| |||||||||||||| ||||| |||||
Sbjct: 71997 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtc 71953
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/105 (89%), Gaps = 3/105 (2%)
 Strand = Plus / Minus

                                                                            
Query: 306      gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 362
                ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 23140282 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 23140223

                                                             
Query: 363      gaaggagagcagcccctgagccgcgctgttgccactggctgcgtc 407
                |||||| || || ||||| |||||||||||||| ||||| |||||
Sbjct: 23140222 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtc 23140178
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>dbj|AK106175.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C07, full
           insert sequence
          Length = 985

 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/105 (89%), Gaps = 3/105 (2%)
 Strand = Plus / Minus

                                                                       
Query: 306 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 362
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 787 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 728

                                                        
Query: 363 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtc 407
           |||||| || || ||||| |||||||||||||| ||||| |||||
Sbjct: 727 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtc 683
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>dbj|AK104118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A05, full
           insert sequence
          Length = 986

 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/105 (89%), Gaps = 3/105 (2%)
 Strand = Plus / Minus

                                                                       
Query: 306 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 362
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 788 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 729

                                                        
Query: 363 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtc 407
           |||||| || || ||||| |||||||||||||| ||||| |||||
Sbjct: 728 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtc 684
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>dbj|AK060006.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B06, full
           insert sequence
          Length = 1097

 Score =  117 bits (59), Expect = 3e-23
 Identities = 94/105 (89%), Gaps = 3/105 (2%)
 Strand = Plus / Minus

                                                                       
Query: 306 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 362
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 796 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 737

                                                        
Query: 363 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtc 407
           |||||| || || ||||| |||||||||||||| ||||| |||||
Sbjct: 736 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtc 692
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                               
Query: 330      gccgcctcaaaccctagatccgggtgccccgaggaaggagagcagcc 376
                ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 35401183 gccgcatcaaaccccagatccgggcgccccgaggaaggagagcagcc 35401229



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 331      ccgcctcaaaccctagatcc 350
                ||||||||||||||||||||
Sbjct: 17421487 ccgcctcaaaccctagatcc 17421506
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>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1088C09
          Length = 154084

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                            
Query: 330   gccgcctcaaaccctagatccgggtgccccgaggaaggagagcagcc 376
             ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 25132 gccgcatcaaaccccagatccgggcgccccgaggaaggagagcagcc 25178
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>dbj|AK108526.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B09, full
           insert sequence
          Length = 792

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 330 gccgcctcaaaccctagatccgggtgccccgaggaaggagagcagcc 376
           ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 473 gccgcatcaaaccccagatccgggcgccccgaggaaggagagcagcc 427
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>gb|AY110204.1| Zea mays CL16631_1 mRNA sequence
          Length = 878

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                       
Query: 276 tccagtttaagacgaacttctcgcgcccaggaagcctaccagatctcgtcgcctgccgcc 335
           ||||| |||| |||||| | ||| ||||| | | |||||||||||| | |  | ||||||
Sbjct: 247 tccagcttaatacgaacctgtcgagcccaaggaccctaccagatcttgccctccgccgcc 306

                                                     
Query: 336 tcaaaccctagatccgggtgccccgaggaaggagagcagccc 377
           |||||||| |||||||||||| || ||||| || ||||||||
Sbjct: 307 tcaaaccccagatccgggtgcgccaaggaatgaaagcagccc 348
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>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 244    cacagctacagcaacatcagatcc 267
              ||||||||||||||||||||||||
Sbjct: 122471 cacagctacagcaacatcagatcc 122448
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>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 169516 cacagccacagcaacatcagatcca 169540
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>gb|AC146932.3| Sus scrofa clone RP44-244C10, complete sequence
          Length = 130764

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 244   cacagctacagcaacatcagatcca 268
             |||||| ||||||||||||||||||
Sbjct: 58183 cacagccacagcaacatcagatcca 58207
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>emb|CR974572.21| Pig DNA sequence from clone CH242-200F24 on chromosome 17, complete
             sequence
          Length = 137431

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 244   cacagctacagcaacatcagatcca 268
             |||||| ||||||||||||||||||
Sbjct: 30136 cacagccacagcaacatcagatcca 30160
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>emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 in linkage group 7,
              complete sequence
          Length = 208436

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    tggaactcatgagagaaaatt 148
              |||||||||||||||||||||
Sbjct: 117227 tggaactcatgagagaaaatt 117207
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>emb|CR956415.12| Pig DNA sequence from clone PigE-223M7 on chromosome 6, complete sequence
          Length = 209049

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 126777 cacagccacagcaacatcagatcca 126753
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>emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in linkage group 7, complete
              sequence
          Length = 196531

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    tggaactcatgagagaaaatt 148
              |||||||||||||||||||||
Sbjct: 137355 tggaactcatgagagaaaatt 137335
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>emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chromosome 7, complete
              sequence
          Length = 178646

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 103902 cacagcaacagcaacatcagatcca 103926
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>emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chromosome 17, complete
             sequence
          Length = 207434

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 244   cacagctacagcaacatcagatcca 268
             |||||||||||||||| ||||||||
Sbjct: 91940 cacagctacagcaacagcagatcca 91964
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>emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chromosome 7, complete
             sequence
          Length = 186089

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 243   gcacagctacagcaacatcagatcc 267
             ||||||||||||||||| |||||||
Sbjct: 80479 gcacagctacagcaacaccagatcc 80455
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>emb|AL731563.9| Human DNA sequence from clone RP11-344N10 on chromosome 10 Contains
            the P4HA1 gene for procollagen-proline, 2-oxoglutarate
            4-dioxygenase (proline 4-hydroxylase) alpha polypeptide
            I, a novel gene, a novel pseudogene, a ribosomal protein
            L17 (RPL17) pseudogene and a CpG island, complete
            sequence
          Length = 129559

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 60   taaacatcatacatcatgcat 80
            |||||||||||||||||||||
Sbjct: 1772 taaacatcatacatcatgcat 1752
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>emb|AL591420.5| Zebrafish DNA sequence from clone BUSM1-221H6 in linkage group 7
             Contains three genes for novel immune-type receptors
             (nitr), complete sequence
          Length = 51019

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   tggaactcatgagagaaaatt 148
             |||||||||||||||||||||
Sbjct: 34056 tggaactcatgagagaaaatt 34076
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>gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence
          Length = 154348

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 146834 cacagccacagcaacatcagatcca 146810
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>gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, complete sequence
          Length = 131909

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  taaacatcatacatcatgcat 80
           |||||||||||||||||||||
Sbjct: 229 taaacatcatacatcatgcat 249
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>gb|AC158442.3| Sus scrofa clone RP44-406A19, complete sequence
          Length = 173956

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 169779 cacagccacagcaacatcagatcca 169803
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>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 149774 cacagccacagcaacatcagatcca 149750



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 22649 cacagccacagcaacatcagatcc 22626
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>gb|AC097586.3| Sus scrofa clone RP44-394E19, complete sequence
          Length = 174554

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 170577 cacagccacagcaacatcagatcca 170601
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>gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence
          Length = 170283

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 102396 cacagccacagcaacatcagatcca 102372
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>emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in linkage group 7,
             complete sequence
          Length = 162939

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   tggaactcatgagagaaaatt 148
             |||||||||||||||||||||
Sbjct: 34177 tggaactcatgagagaaaatt 34197
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>emb|CR956385.13| Pig DNA sequence from clone CH242-177A17 on chromosome 6, complete
              sequence
          Length = 182211

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 126007 cacagccacagcaacatcagatcca 126031



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 244   cacagctacagcaacatcagatcca 268
             |||||| ||||||||||||||||||
Sbjct: 12545 cacagccacagcaacatcagatcca 12521
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>emb|CT009664.17| Pig DNA sequence from clone CH242-113D8 on chromosome 7, complete
              sequence
          Length = 182046

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 139317 cacagccacagcaacatcagatcca 139341



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 72240 cacagccacagcaacatcagatcc 72217
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>emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chromosome 6, complete sequence
          Length = 174170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    cacagctacagcaacatcagatcca 268
              |||||| ||||||||||||||||||
Sbjct: 124499 cacagccacagcaacatcagatcca 124475
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>gb|AY663543.1| Sus scrofa albumin gene, complete cds
          Length = 35317

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||||||||||||| |||||||
Sbjct: 16394 cacagctacagcaacaccagatcc 16417
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>ref|XM_421595.1| PREDICTED: Gallus gallus similar to cadherin-related 23 protein
             (LOC423718), mRNA
          Length = 16824

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   cgaggaaggagagcagcccc 378
             ||||||||||||||||||||
Sbjct: 10976 cgaggaaggagagcagcccc 10995
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>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through
             64 and complete cds
          Length = 153745

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   acagctacagcaacatcagatcca 268
             |||||||||||||| |||||||||
Sbjct: 42256 acagctacagcaacgtcagatcca 42279
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>emb|CR956431.10| Pig DNA sequence from clone PigE-60M9 on chromosome 7, complete sequence
          Length = 206517

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 244    cacagctacagcaacatcagatcc 267
              |||||||||||||||| |||||||
Sbjct: 116642 cacagctacagcaacaccagatcc 116619
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>emb|CR956640.5| Pig DNA sequence from clone CH242-155M9 on chromosome 17, complete
             sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 13420 cacagccacagcaacatcagatcc 13443
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>emb|CR974432.6| Pig DNA sequence from clone PigE-204L22 on chromosome 6, complete
              sequence
          Length = 159182

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 244    cacagctacagcaacatcagatcc 267
              |||||| |||||||||||||||||
Sbjct: 158529 cacagccacagcaacatcagatcc 158552
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>emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chromosome 6, complete
             sequence
          Length = 118731

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 84296 cacagccacagcaacatcagatcc 84273
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>emb|CR956369.6| Pig DNA sequence from clone PigI-416G4 on chromosome 7, complete
            sequence
          Length = 140162

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 244  cacagctacagcaacatcagatcc 267
            |||||||||||||||| |||||||
Sbjct: 5075 cacagctacagcaacaccagatcc 5052
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>emb|CR974434.12| Pig DNA sequence from clone CH242-241E19 on chromosome 7, complete
            sequence
          Length = 186072

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  cacagctacagcaacatcagatcc 267
            |||||| |||||||||||||||||
Sbjct: 3748 cacagccacagcaacatcagatcc 3771
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>emb|CR974452.4| Pig DNA sequence from clone PigE-201A17 on chromosome 6, complete
             sequence
          Length = 84444

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 83098 cacagccacagcaacatcagatcc 83075
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>emb|CR956391.5| Pig DNA sequence from clone PigE-133M12 on chromosome 7, complete
             sequence
          Length = 168012

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             ||||||| ||||||||||||||||
Sbjct: 94616 cacagctgcagcaacatcagatcc 94593
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>emb|CR956422.6| Pig DNA sequence from clone PigE-93N11 on chromosome 6, complete
             sequence
          Length = 184430

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 46385 cacagccacagcaacatcagatcc 46408
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>emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chromosome 17, complete
              sequence
          Length = 197576

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 244    cacagctacagcaacatcagatcc 267
              |||||| |||||||||||||||||
Sbjct: 146476 cacagccacagcaacatcagatcc 146453
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>gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence
          Length = 200062

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||||||||||||| |||||||
Sbjct: 12966 cacagctacagcaacaccagatcc 12943
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>gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, complete sequence
          Length = 275731

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 245   acagctacagcaacatcagatcca 268
             ||||||||||||| ||||||||||
Sbjct: 72190 acagctacagcaaaatcagatcca 72167
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>gb|AC091403.3| Sus scrofa clone RP44-431F19, complete sequence
          Length = 80906

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 76464 cacagccacagcaacatcagatcc 76487
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>gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence
          Length = 164663

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  cacagctacagcaacatcagatcc 267
            |||||| |||||||||||||||||
Sbjct: 4106 cacagccacagcaacatcagatcc 4129
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>emb|AL034408.2|HS710L4 Human DNA sequence from clone RP4-710L4 on chromosome Xq11.2-12
             Contains the 5' end of the MTMR8 gene for myotubularin
             related protein 8, a SHC (Src homology 2 domain
             containing) transforming protein 1 (SHC1) pseudogene and a
             CpG island, complete sequence
          Length = 129849

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   aagcctaccagatctcgtcgcctg 330
             |||||||||||||||| |||||||
Sbjct: 24964 aagcctaccagatctcctcgcctg 24987
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>emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic region, haplotype H01, clone BAC
            207G8
          Length = 152211

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  cacagctacagcaacatcagatcc 267
            |||||| |||||||||||||||||
Sbjct: 4115 cacagccacagcaacatcagatcc 4138
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>emb|AL773562.15| Pig DNA sequence from clone XX-649D6, complete sequence
          Length = 127265

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 244    cacagctacagcaacatcagatcc 267
              |||||| |||||||||||||||||
Sbjct: 103746 cacagccacagcaacatcagatcc 103769
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>gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 184
            of 460 of the complete genome
          Length = 11910

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  tgttgccactggctgcgtcg 408
            ||||||||||||||||||||
Sbjct: 8281 tgttgccactggctgcgtcg 8262
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>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             ||||||| ||||||||||||||||
Sbjct: 93665 cacagctgcagcaacatcagatcc 93688
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>dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31, MOG, TRIM15, KRAB,
             TRIM40 genes, complete cds
          Length = 143480

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 92467 cacagccacagcaacatcagatcc 92490
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>gb|DQ072198.1| Uncultured bacterium clone M60-134 putative dissimilatory nitrite
           reductase (nirS) gene, partial cds
          Length = 851

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 accagatctcgtcgcctgcc 332
           ||||||||||||||||||||
Sbjct: 747 accagatctcgtcgcctgcc 728
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 389     tgttgccactggctgcgtcg 408
               ||||||||||||||||||||
Sbjct: 3008863 tgttgccactggctgcgtcg 3008882
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>gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166071

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 265   tccagggcaactccagtttaagac 288
             ||||||||||||||||||| ||||
Sbjct: 84923 tccagggcaactccagttttagac 84946
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>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0507H06
          Length = 136351

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   ccgcctcaaaccctagatcc 350
             ||||||||||||||||||||
Sbjct: 74879 ccgcctcaaaccctagatcc 74898
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>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence
          Length = 179691

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||| |||||||||||||||||
Sbjct: 66625 cacagccacagcaacatcagatcc 66602
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>dbj|AB106555.1| Sus scrofa IL-16 gene for interleukin 16, complete cds
          Length = 20252

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||||||||||||| |||||||
Sbjct: 13478 cacagctacagcaacaccagatcc 13501
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>emb|CT009503.7| Pig DNA sequence from clone CH242-137E23 on chromosome 7, complete
              sequence
          Length = 222099

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 244    cacagctacagcaacatcagatcc 267
              |||||| |||||||||||||||||
Sbjct: 172466 cacagccacagcaacatcagatcc 172443
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>emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chromosome 4, complete
              sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 244    cacagctacagcaacatcagatcc 267
              |||||||||||||||| |||||||
Sbjct: 162939 cacagctacagcaacaccagatcc 162962
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>emb|AJ009912.1|SSC9912 Sus scrofa plp gene
          Length = 20957

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 244   cacagctacagcaacatcagatcc 267
             |||||||||||||||| |||||||
Sbjct: 10742 cacagctacagcaacaccagatcc 10719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,310,410
Number of Sequences: 3902068
Number of extensions: 3310410
Number of successful extensions: 62208
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61938
Number of HSP's gapped (non-prelim): 263
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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