ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZNT2_HUMAN (Q9BRI3) Zinc transporter 2 (ZnT-2) (Solute carrier f... 30 3.7
2VP40_HCMVA (P16753) Capsid protein P40 [Contains: Assemblin (Pro... 29 4.8
3GPDA_BARQU (Q6G0U8) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 29 6.3
4YMF11_MARPO (P38456) Hypothetical 83.1 kDa protein in COB-ATPA i... 29 6.3
5GPDA_BARHE (Q6G518) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 28 8.2

>ZNT2_HUMAN (Q9BRI3) Zinc transporter 2 (ZnT-2) (Solute carrier family 30|
           member 2)
          Length = 323

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 74  IQNLNLALQTNHICRYTSGPDNH 142
           +Q + LA Q+NH C    GPD+H
Sbjct: 40  LQAIELAAQSNHHCHAQKGPDSH 62



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>VP40_HCMVA (P16753) Capsid protein P40 [Contains: Assemblin (Protease) (EC|
           3.4.21.97); Capsid assembly protein; Gene UL80 protein;
           Gene UL80.5 protein; C-terminal peptide]
          Length = 708

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = +1

Query: 172 LSAPNSIRSK*TRRNCYHFTSSDNGSGGRTNDVKSAKETFEVRLLQEVASAISKDFLT-- 345
           LS P        R+      +SD GSGG     +  ++ ++   L++    + +D     
Sbjct: 527 LSFPGEAEHGRARKRLKSHVNSDGGSGGHAGSNQQQQQRYDE--LRDAIHELKRDLFAAR 584

Query: 346 -FFTDIALSLPSSSTLAMTSSVIRWTTGKVFHSG 444
              T ++ +LPS+++ + T++ +   TG++   G
Sbjct: 585 QSSTLLSAALPSAASSSPTTTTVCTPTGELTSGG 618



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>GPDA_BARQU (Q6G0U8) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +1

Query: 298 RLLQEVASAISKDFL--------TFFTDIALSLPSSSTLAMTSSVIRWTTGKVFHSGTS 450
           RLLQEVA  I  D +        TF  ++A+ LP++ T+A +++       ++FH   S
Sbjct: 116 RLLQEVAREILGDKIPLAIFSGPTFAKELAIGLPTAITVAASNAEFSEELQQLFHCDKS 174



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>YMF11_MARPO (P38456) Hypothetical 83.1 kDa protein in COB-ATPA intergenic|
           region (ORF 732)
          Length = 732

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 60  LSQEQYKTSTLRYRQTTFAGTLLAQTIIHEIDVYV 164
           L Q++ KTS     + T  G LL   ++HE+D++V
Sbjct: 326 LVQKEIKTSLRAGAEGTGVGPLLCNIVLHELDLFV 360



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>GPDA_BARHE (Q6G518) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = +1

Query: 298 RLLQEVASAISKDFL--------TFFTDIALSLPSSSTLAMTSSVIRWTTGKVFH 438
           RLLQEVA  I  D +        TF  ++A+ LP++ T+A + +       ++FH
Sbjct: 116 RLLQEVAREILGDKIPLAVFSGPTFAKELAIGLPTAITIAASDTEFSEELQQLFH 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,906,252
Number of Sequences: 219361
Number of extensions: 1037846
Number of successful extensions: 2836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2830
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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