ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111251.1| Zea mays CL35669_1 mRNA sequence 58 3e-05
2gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 46 0.099
3ref|XM_469891.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.39
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.39
5gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 44 0.39
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
7dbj|AK062731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
8ref|XM_644801.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 1.5
9gb|AC110538.6| Mus musculus chromosome 5, clone RP23-71L23, comp... 40 6.1
10gb|AC158754.4| Mus musculus chromosome 5, clone RP24-167K16, com... 40 6.1
11ref|XM_777465.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.1
12emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
13emb|AL845281.5| Mouse DNA sequence from clone RP23-476B1 on chro... 40 6.1
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
15gb|AC073465.5| Homo sapiens BAC clone RP11-158L8 from 2, complet... 40 6.1 
>gb|AY111251.1| Zea mays CL35669_1 mRNA sequence
          Length = 636

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 141 atacacgaaattgatgtatatgtgcaatttcctatcagccc 181
           ||||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 81  atacatgaaatcgatgtatatgtgtaatttcctatcagccc 121



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 338 tcctcaccttcttcaccgatatagccttgagcct 371
           |||| |||||||||||||| |||||||| |||||
Sbjct: 269 tcctaaccttcttcaccgaaatagccttcagcct 302



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 gttttccactctggaacatc 449
           ||||||||||||||||||||
Sbjct: 361 gttttccactctggaacatc 380
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 375     ctcttcctcaaccctggcgatgacgtc 401
               ||||||||||||| |||||||||||||
Sbjct: 6956793 ctcttcctcaaccatggcgatgacgtc 6956819
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>ref|XM_469891.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1278

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 292  gaagtcaggctgctccaagaagtagcgtcc 321
            ||||||| |||||||||||||| |||||||
Sbjct: 1205 gaagtcaagctgctccaagaagaagcgtcc 1176



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 343  accttcttcaccgatatagccttgagccttccctcttcctcaacc 387
            ||||||||||| || |||||||| ||||| || ||||| ||||||
Sbjct: 1154 accttcttcactgacatagccttcagcctgccttcttcttcaacc 1110
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 292      gaagtcaggctgctccaagaagtagcgtcc 321
                ||||||| |||||||||||||| |||||||
Sbjct: 31377612 gaagtcaagctgctccaagaagaagcgtcc 31377583



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 343      accttcttcaccgatatagccttgagccttccctcttcctcaacc 387
                ||||||||||| || |||||||| ||||| || ||||| ||||||
Sbjct: 31377561 accttcttcactgacatagccttcagcctgccttcttcttcaacc 31377517



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 136      caatcatacacgaaattgatgtatatgtgcaatttcctat 175
                |||| ||||||| | |||||  ||||||||||||||||||
Sbjct: 31377757 caattatacacggatttgattaatatgtgcaatttcctat 31377718
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
              sequence
          Length = 159091

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 292    gaagtcaggctgctccaagaagtagcgtcc 321
              ||||||| |||||||||||||| |||||||
Sbjct: 118188 gaagtcaagctgctccaagaagaagcgtcc 118217



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 343    accttcttcaccgatatagccttgagccttccctcttcctcaacc 387
              ||||||||||| || |||||||| ||||| || ||||| ||||||
Sbjct: 118239 accttcttcactgacatagccttcagcctgccttcttcttcaacc 118283



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 136    caatcatacacgaaattgatgtatatgtgcaatttcctat 175
              |||| ||||||| | |||||  ||||||||||||||||||
Sbjct: 118043 caattatacacggatttgattaatatgtgcaatttcctat 118082
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 292      gaagtcaggctgctccaagaagtagcgtcc 321
                ||||||| |||||||||||||| |||||||
Sbjct: 31468128 gaagtcaagctgctccaagaagaagcgtcc 31468099



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 343      accttcttcaccgatatagccttgagccttccctcttcctcaacc 387
                ||||||||||| || |||||||| ||||| || ||||| ||||||
Sbjct: 31468077 accttcttcactgacatagccttcagcctgccttcttcttcaacc 31468033



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 136      caatcatacacgaaattgatgtatatgtgcaatttcctat 175
                |||| ||||||| | |||||  ||||||||||||||||||
Sbjct: 31468273 caattatacacggatttgattaatatgtgcaatttcctat 31468234
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>dbj|AK062731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E05, full
           insert sequence
          Length = 813

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 292 gaagtcaggctgctccaagaagtagcgtcc 321
           ||||||| |||||||||||||| |||||||
Sbjct: 594 gaagtcaagctgctccaagaagaagcgtcc 565



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 343 accttcttcaccgatatagccttgagccttccctcttcctcaacc 387
           ||||||||||| || |||||||| ||||| || ||||| ||||||
Sbjct: 543 accttcttcactgacatagccttcagcctgccttcttcttcaacc 499



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 136 caatcatacacgaaattgatgtatatgtgcaatttcctat 175
           |||| ||||||| | |||||  ||||||||||||||||||
Sbjct: 739 caattatacacggatttgattaatatgtgcaatttcctat 700
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>ref|XM_644801.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (262.t00003)
            partial mRNA
          Length = 1713

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    aatgctttgataatttgattt 28
            |||||||||||||||||||||
Sbjct: 1704 aatgctttgataatttgattt 1684
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>gb|AC110538.6| Mus musculus chromosome 5, clone RP23-71L23, complete sequence
          Length = 205923

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ctgttaccattttacatcca 235
              ||||||||||||||||||||
Sbjct: 190440 ctgttaccattttacatcca 190421
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>gb|AC158754.4| Mus musculus chromosome 5, clone RP24-167K16, complete sequence
          Length = 131339

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   ctgttaccattttacatcca 235
             ||||||||||||||||||||
Sbjct: 43849 ctgttaccattttacatcca 43868
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>ref|XM_777465.1| PREDICTED: Strongylocentrotus purpuratus similar to CREB binding
            protein (LOC577224), mRNA
          Length = 8058

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 360  agccttgagccttccctcttcctc 383
            ||||||||||||| ||||||||||
Sbjct: 6192 agccttgagcctttcctcttcctc 6169
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   agaagtaaatagacaaggagaaac 216
             |||||||| |||||||||||||||
Sbjct: 91934 agaagtaattagacaaggagaaac 91957
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>emb|AL845281.5| Mouse DNA sequence from clone RP23-476B1 on chromosome 2, complete
             sequence
          Length = 195228

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 199   aaatagacaaggagaaactgttaccatt 226
             ||||||| ||| ||||||||||||||||
Sbjct: 66289 aaatagagaagaagaaactgttaccatt 66262
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 193      agaagtaaatagacaaggagaaac 216
                |||||||| |||||||||||||||
Sbjct: 13978054 agaagtaattagacaaggagaaac 13978077
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>gb|AC073465.5| Homo sapiens BAC clone RP11-158L8 from 2, complete sequence
          Length = 135752

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 190   atcagaagtaaatagacaaggaga 213
             |||||||| |||||||||||||||
Sbjct: 47323 atcagaagaaaatagacaaggaga 47346


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,866,789
Number of Sequences: 3902068
Number of extensions: 3866789
Number of successful extensions: 70545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70455
Number of HSP's gapped (non-prelim): 90
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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