ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY112315.1| Zea mays CL1308_2 mRNA sequence 159 1e-35
2emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5 151 3e-33
3emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2 151 3e-33
4gb|AY104474.1| Zea mays PCO112790 mRNA sequence 151 3e-33
5gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence 143 6e-31
6dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7ref|XM_450544.1| Oryza sativa (japonica cultivar-group), mRNA 94 5e-16
8ref|XM_506649.1| PREDICTED Oryza sativa (japonica cultivar-group... 94 5e-16
9ref|XM_450545.1| Oryza sativa (japonica cultivar-group), mRNA 94 5e-16
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
11dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
12dbj|AB117994.1| Oryza sativa (japonica cultivar-group) bip107 mR... 94 5e-16
13dbj|AK098857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
14dbj|AK067685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
15dbj|AK058307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
16gb|AY747501.1| Arachis hypogaea isolate PRGAFG08 resistance prot... 48 0.028
17ref|NM_106433.3| Arabidopsis thaliana translation initiation fac... 42 1.7
18ref|XM_517102.1| PREDICTED: Pan troglodytes similar to actin bin... 42 1.7
19gb|AC104856.19| Mus musculus chromosome 5, clone RP23-53G23, com... 42 1.7
20gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome... 42 1.7
21gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, compl... 42 1.7
22gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 42 1.7
23gb|AY114664.1| Arabidopsis thaliana putative eukaryotic translat... 42 1.7
24gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, com... 42 1.7
25gb|AY065097.1| Arabidopsis thaliana putative eukaryotic translat... 42 1.7
26gb|AY062694.1| Arabidopsis thaliana putative eukaryotic translat... 42 1.7
27gb|AC012193.6|AC012193 Arabidopsis thaliana chromosome 1 BAC T32... 42 1.7
28gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana... 42 1.7
29gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome... 42 1.7
30gb|BT002163.1| Arabidopsis thaliana putative eukaryotic translat... 42 1.7
31emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on ch... 42 1.7
32gb|AY785504.1| Arabidopsis thaliana At1g77850 gene, promoter region 42 1.7
33ref|XM_529781.1| PREDICTED: Pan troglodytes LOC454103 (LOC454103... 40 6.9
34gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.9
35gb|AE006305.1| Lactococcus lactis subsp. lactis IL1403 section 6... 40 6.9
36gb|BC091058.1| Xenopus tropicalis hypothetical protein LOC594878... 40 6.9
37emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chro... 40 6.9
38gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 6.9
39emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 o... 40 6.9
40dbj|AB226103.1| Aspergillus oryzae cDNA, contig sequence: AoEST2960 40 6.9
41gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, comp... 40 6.9
42dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 6.9
43dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 40 6.9
44dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.9
45dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.9
46gb|AY103775.1| Zea mays PCO076979 mRNA sequence 40 6.9
47emb|AL772199.11| Mouse DNA sequence from clone RP23-86J22 on chr... 40 6.9
48dbj|AP005265.2| Homo sapiens genomic DNA, chromosome 18, clone:R... 40 6.9 
>gb|AY112315.1| Zea mays CL1308_2 mRNA sequence
          Length = 840

 Score =  159 bits (80), Expect = 1e-35
 Identities = 242/296 (81%)
 Strand = Plus / Minus

                                                                       
Query: 207 tcgtcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgg 266
           ||||||||||||||||||||||||||||| || |  |||||||| ||||| || ||||||
Sbjct: 488 tcgtcagactcggcgctctggagccactcgacaaacggcttggcattcttgacgacctgg 429

                                                                       
Query: 267 gagtccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaagg 326
           |||||||| || || || |||||  |  ||||||| | |||||  ||||| ||||| |||
Sbjct: 428 gagtcctttccagctgcgacagcagcgttgtaccagtccacaacggtttcctcctccagg 369

                                                                       
Query: 327 acatctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctg 386
           | ||||||||| || ||||| |||||||| || || |  |||||||| ||||||| | ||
Sbjct: 368 atatctccgtcgtacagggctttcaggacaactgggacctccttcagcgcctcggggttg 309

                                                                       
Query: 387 cacttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggc 446
           ||||||| ||  || ||||| ||||  || | ||| ||  |||||||| | ||||| |||
Sbjct: 308 cacttgctgccaaaagcctcgatggcttgaatcagcagggtctgggcaccctcatctggc 249

                                                                   
Query: 447 acagcagcagcaaggtacttcttgttcttcatcacatcctttgcaaaccccttgcc 502
           |||||| | ||||||||||||||||||||||  || ||||||||||| ||||||||
Sbjct: 248 acagcaactgcaaggtacttcttgttcttcacgacctcctttgcaaatcccttgcc 193
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>emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5
          Length = 1975

 Score =  151 bits (76), Expect = 3e-33
 Identities = 220/268 (82%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||||||||| |||||||||||||| ||||  |||||||| ||||| ||||||||||||
Sbjct: 1679 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 1620

                                                                        
Query: 270  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 329
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1619 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1560

                                                                        
Query: 330  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 389
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1559 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1500

                                                                        
Query: 390  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 449
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1499 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1440

                                        
Query: 450  gcagcagcaaggtacttcttgttcttca 477
            ||| | ||||||||||||||||||||||
Sbjct: 1439 gcaactgcaaggtacttcttgttcttca 1412
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>emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2
          Length = 6831

 Score =  151 bits (76), Expect = 3e-33
 Identities = 220/268 (82%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||||||||| |||||||||||||| ||||  |||||||| ||||| ||||||||||||
Sbjct: 4878 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 4819

                                                                        
Query: 270  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 329
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 4818 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 4759

                                                                        
Query: 330  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 389
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 4758 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 4699

                                                                        
Query: 390  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 449
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 4698 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 4639

                                        
Query: 450  gcagcagcaaggtacttcttgttcttca 477
            ||| | ||||||||||||||||||||||
Sbjct: 4638 gcaactgcaaggtacttcttgttcttca 4611
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>gb|AY104474.1| Zea mays PCO112790 mRNA sequence
          Length = 2008

 Score =  151 bits (76), Expect = 3e-33
 Identities = 220/268 (82%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||||||||| |||||||||||||| ||||  |||||||| ||||| ||||||||||||
Sbjct: 1740 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 1681

                                                                        
Query: 270  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 329
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1680 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1621

                                                                        
Query: 330  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 389
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1620 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1561

                                                                        
Query: 390  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 449
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1560 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1501

                                        
Query: 450  gcagcagcaaggtacttcttgttcttca 477
            ||| | ||||||||||||||||||||||
Sbjct: 1500 gcaactgcaaggtacttcttgttcttca 1473
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>gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence
          Length = 1992

 Score =  143 bits (72), Expect = 6e-31
 Identities = 219/268 (81%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||||||||| |||||||||||||| ||||  || ||||| ||||| ||||||||||||
Sbjct: 1725 tcagactcggcactctggagccactcgacgaacgggttggcattcttgacaacctgggag 1666

                                                                        
Query: 270  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 329
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1665 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1606

                                                                        
Query: 330  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 389
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1605 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1546

                                                                        
Query: 390  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 449
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1545 ttaccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1486

                                        
Query: 450  gcagcagcaaggtacttcttgttcttca 477
            ||| | ||||||||||||||||||||||
Sbjct: 1485 gcaactgcaaggtacttcttgttcttca 1458
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>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0545E05
          Length = 163229

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                         
Query: 210   tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
             ||||| || ||||||||||||||||||||||  || ||||| |||||||| |||||||| 
Sbjct: 26661 tcagaatccgcgctctggagccactccacgaatggtttggcattcttcaccacctgggac 26720

                                                
Query: 270   tccttgccggcagcaacagcttcactgtaccactg 304
             |||||||| |||||||||| |||| ||||||||||
Sbjct: 26721 tccttgccagcagcaacagattcattgtaccactg 26755



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 417   agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
             ||||||| ||||||||  ||||||||||| |||||||| || ||| | ||||| ||||||
Sbjct: 26868 agcaggaccatctgggaggcttcatcaggtacagcagccgcgaggaatttcttcttcttc 26927

                                       
Query: 477   atcacatcctttgcaaaccccttgcc 502
             |  || ||||| ||||| || |||||
Sbjct: 26928 acaacctccttggcaaatcctttgcc 26953
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>ref|XM_450544.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2008

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689

                                               
Query: 270  tccttgccggcagcaacagcttcactgtaccactg 304
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1688 tccttgccaccagcaacagattcattataccactg 1654



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 417  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482

             
Query: 477  a 477
            |
Sbjct: 1481 a 1481
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>ref|XM_506649.1| PREDICTED Oryza sativa (japonica cultivar-group), P0706E03.4-1 mRNA
          Length = 2011

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1751 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1692

                                               
Query: 270  tccttgccggcagcaacagcttcactgtaccactg 304
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1691 tccttgccaccagcaacagattcattataccactg 1657



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 417  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1544 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1485

             
Query: 477  a 477
            |
Sbjct: 1484 a 1484
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>ref|XM_450545.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1407

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095

                                               
Query: 270  tccttgccggcagcaacagcttcactgtaccactg 304
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1094 tccttgccaccagcaacagattcattataccactg 1060



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 417 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888

            
Query: 477 a 477
           |
Sbjct: 887 a 887
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                           
Query: 210     tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
               ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 9584894 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 9584835

                                                  
Query: 270     tccttgccggcagcaacagcttcactgtaccactg 304
               ||||||||  ||||||||| |||| | ||||||||
Sbjct: 9584834 tccttgccaccagcaacagattcattataccactg 9584800



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                           
Query: 417     agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
               ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 9584687 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 9584628

                
Query: 477     a 477
               |
Sbjct: 9584627 a 9584627
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>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                         
Query: 210   tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
             ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 24991 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 24932

                                                
Query: 270   tccttgccggcagcaacagcttcactgtaccactg 304
             ||||||||  ||||||||| |||| | ||||||||
Sbjct: 24931 tccttgccaccagcaacagattcattataccactg 24897



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 417   agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
             ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 24784 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 24725

              
Query: 477   a 477
             |
Sbjct: 24724 a 24724
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>dbj|AB117994.1| Oryza sativa (japonica cultivar-group) bip107 mRNA for BRI1-KD
            interacting protein 107, partial cds
          Length = 1430

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1152 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1093

                                               
Query: 270  tccttgccggcagcaacagcttcactgtaccactg 304
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1092 tccttgccaccagcaacagattcattataccactg 1058



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 417 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 945 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 886

            
Query: 477 a 477
           |
Sbjct: 885 a 885
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>dbj|AK098857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L01, full
            insert sequence
          Length = 2008

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689

                                               
Query: 270  tccttgccggcagcaacagcttcactgtaccactg 304
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1688 tccttgccaccagcaacagattcattataccactg 1654



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 417  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482

             
Query: 477  a 477
            |
Sbjct: 1481 a 1481
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>dbj|AK067685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G06, full
            insert sequence
          Length = 2010

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1750 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1691

                                               
Query: 270  tccttgccggcagcaacagcttcactgtaccactg 304
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1690 tccttgccaccagcaacagattcattataccactg 1656



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 417  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1543 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1484

             
Query: 477  a 477
            |
Sbjct: 1483 a 1483
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>dbj|AK058307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H04, full
            insert sequence
          Length = 1407

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 269
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095

                                               
Query: 270  tccttgccggcagcaacagcttcactgtaccactg 304
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1094 tccttgccaccagcaacagattcattataccactg 1060



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 417 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 476
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888

            
Query: 477 a 477
           |
Sbjct: 887 a 887
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>gb|AY747501.1| Arachis hypogaea isolate PRGAFG08 resistance protein PRG gene,
           partial cds
          Length = 366

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 458 aaggtacttcttgttcttcatcac 481
           ||||||||||||||||||||||||
Sbjct: 289 aaggtacttcttgttcttcatcac 266
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>ref|NM_106433.3| Arabidopsis thaliana translation initiation factor AT1G77840 mRNA,
            complete cds
          Length = 1788

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 210  tcagactcggcgctctggagccactccac 238
            |||||||| |||||||| |||||||||||
Sbjct: 1583 tcagactcagcgctctgaagccactccac 1555
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>ref|XM_517102.1| PREDICTED: Pan troglodytes similar to actin binding LIM protein
            family, member 2; actin binding LIM protein 2
            (LOC461112), mRNA
          Length = 5823

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 277  cggcagcaacagcttcactgt 297
            |||||||||||||||||||||
Sbjct: 3494 cggcagcaacagcttcactgt 3514
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>gb|AC104856.19| Mus musculus chromosome 5, clone RP23-53G23, complete sequence
          Length = 169800

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 97    gacaacgagggacacttcaaacaca 121
             ||||| |||||||||||||||||||
Sbjct: 87499 gacaaggagggacacttcaaacaca 87523
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>gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome 15, complete
            sequence
          Length = 212090

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   gacaacgagggacacttcaaacaca 121
            ||||| |||||||||||||||||||
Sbjct: 8200 gacaaggagggacacttcaaacaca 8176
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>gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, complete sequence
          Length = 196923

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 97     gacaacgagggacacttcaaacaca 121
              ||||| |||||||||||||||||||
Sbjct: 125270 gacaaggagggacacttcaaacaca 125246
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>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 277    cggcagcaacagcttcactgt 297
              |||||||||||||||||||||
Sbjct: 166280 cggcagcaacagcttcactgt 166260
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>gb|AY114664.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840) mRNA, complete cds
          Length = 1348

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 210  tcagactcggcgctctggagccactccac 238
            |||||||| |||||||| |||||||||||
Sbjct: 1295 tcagactcagcgctctgaagccactccac 1267
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>gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, complete sequence
          Length = 200105

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 66    caactgactcaaactccaaat 86
             |||||||||||||||||||||
Sbjct: 26049 caactgactcaaactccaaat 26029
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>gb|AY065097.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840; T32E8.15) mRNA, complete cds
          Length = 1770

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 210  tcagactcggcgctctggagccactccac 238
            |||||||| |||||||| |||||||||||
Sbjct: 1583 tcagactcagcgctctgaagccactccac 1555
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>gb|AY062694.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840; T32E8.15) mRNA, complete cds
          Length = 1784

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 210  tcagactcggcgctctggagccactccac 238
            |||||||| |||||||| |||||||||||
Sbjct: 1580 tcagactcagcgctctgaagccactccac 1552
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>gb|AC012193.6|AC012193 Arabidopsis thaliana chromosome 1 BAC T32E8 genomic sequence, complete
             sequence
          Length = 82454

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 210   tcagactcggcgctctggagccactccac 238
             |||||||| |||||||| |||||||||||
Sbjct: 77738 tcagactcagcgctctgaagccactccac 77710
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>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I,
             complete sequence
          Length = 110565

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 210   tcagactcggcgctctggagccactccac 238
             |||||||| |||||||| |||||||||||
Sbjct: 13646 tcagactcagcgctctgaagccactccac 13618
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>gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome 15, complete sequence
          Length = 145059

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 97    gacaacgagggacacttcaaacaca 121
             ||||| |||||||||||||||||||
Sbjct: 92702 gacaaggagggacacttcaaacaca 92726
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>gb|BT002163.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840) mRNA, complete cds
          Length = 1348

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 210  tcagactcggcgctctggagccactccac 238
            |||||||| |||||||| |||||||||||
Sbjct: 1295 tcagactcagcgctctgaagccactccac 1267
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>emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on chromosome 4, complete
             sequence
          Length = 157168

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 438   tcatcaggcacagcagcagca 458
             |||||||||||||||||||||
Sbjct: 30014 tcatcaggcacagcagcagca 29994
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>gb|AY785504.1| Arabidopsis thaliana At1g77850 gene, promoter region
          Length = 2500

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 210 tcagactcggcgctctggagccactccac 238
           |||||||| |||||||| |||||||||||
Sbjct: 477 tcagactcagcgctctgaagccactccac 449
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>ref|XM_529781.1| PREDICTED: Pan troglodytes LOC454103 (LOC454103), mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 catcaggcacagcagcagca 458
           ||||||||||||||||||||
Sbjct: 436 catcaggcacagcagcagca 417
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    tccgtcatagagggccttca 351
              ||||||||||||||||||||
Sbjct: 138053 tccgtcatagagggccttca 138072
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>gb|AE006305.1| Lactococcus lactis subsp. lactis IL1403 section 67 of 218 of the
            complete genome
          Length = 11435

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  gtacttcttgttcttcatca 480
            ||||||||||||||||||||
Sbjct: 1069 gtacttcttgttcttcatca 1050
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>gb|BC091058.1| Xenopus tropicalis hypothetical protein LOC594878, mRNA (cDNA clone
           IMAGE:7022094), partial cds
          Length = 1691

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 gcacagcagcagcaaggtac 464
           ||||||||||||||||||||
Sbjct: 127 gcacagcagcagcaaggtac 108
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>emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 150424

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   cagcaaggtacttcttgttc 473
             ||||||||||||||||||||
Sbjct: 62297 cagcaaggtacttcttgttc 62278
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    agcaggagcatctgggcagc 436
              ||||||||||||||||||||
Sbjct: 772056 agcaggagcatctgggcagc 772037
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>emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 on chromosome 20q12 Contains a
              novel gene, complete sequence
          Length = 125517

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 284    aacagcttcactgtaccactgcac 307
              |||||| |||||||||||||||||
Sbjct: 124452 aacagcatcactgtaccactgcac 124429
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>dbj|AB226103.1| Aspergillus oryzae cDNA, contig sequence: AoEST2960
          Length = 720

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 acaacctgggagtccttgcc 277
           ||||||||||||||||||||
Sbjct: 346 acaacctgggagtccttgcc 327
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>gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, complete sequence
          Length = 199594

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  cagcaaggtacttcttgttc 473
            ||||||||||||||||||||
Sbjct: 2920 cagcaaggtacttcttgttc 2901
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ccttcaggacgacaggcaat 365
              ||||||||||||||||||||
Sbjct: 208928 ccttcaggacgacaggcaat 208909
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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    acaacctgggagtccttgcc 277
              ||||||||||||||||||||
Sbjct: 854208 acaacctgggagtccttgcc 854189
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 368     cttcagggcctcggcgctgc 387
               ||||||||||||||||||||
Sbjct: 1571400 cttcagggcctcggcgctgc 1571419
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     gcctcggcgctgcacttgcc 394
               ||||||||||||||||||||
Sbjct: 8835634 gcctcggcgctgcacttgcc 8835653
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>gb|AY103775.1| Zea mays PCO076979 mRNA sequence
          Length = 1495

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 caggcacagcagcagcaagg 461
           ||||||||||||||||||||
Sbjct: 182 caggcacagcagcagcaagg 163
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>emb|AL772199.11| Mouse DNA sequence from clone RP23-86J22 on chromosome 4, complete
              sequence
          Length = 228292

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      agtcttcaaaccaaacttgg 24
              ||||||||||||||||||||
Sbjct: 219035 agtcttcaaaccaaacttgg 219016
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>dbj|AP005265.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-78F17, complete
             sequence
          Length = 51000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    aactcaactgactcaaactccaaa 85
             ||||||| ||||||||||||||||
Sbjct: 20234 aactcaaatgactcaaactccaaa 20211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,808,875
Number of Sequences: 3902068
Number of extensions: 4808875
Number of successful extensions: 110684
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110449
Number of HSP's gapped (non-prelim): 234
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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